Wall clock time and date at job start Sat Apr 11 2020 06:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47207 * 2 1 4 4 C 1.53001 * 109.46866 * 240.00047 * 2 1 3 5 5 O 1.45194 * 109.46786 * 120.00226 * 2 1 3 6 6 C 1.34638 * 117.00554 * 62.60621 * 5 2 1 7 7 O 1.21517 * 119.99440 * 354.89254 * 6 5 2 8 8 N 1.34775 * 120.00363 * 174.89229 * 6 5 2 9 9 C 1.46502 * 119.99750 * 185.01098 * 8 6 5 10 10 C 1.50705 * 112.84820 * 66.30474 * 9 8 6 11 11 O 1.21287 * 119.99629 * 205.46187 * 10 9 8 12 12 N 1.34770 * 119.99855 * 25.46850 * 10 9 8 13 13 C 1.46501 * 119.99925 * 185.01668 * 12 10 9 14 14 C 1.50699 * 109.47424 * 185.03727 * 13 12 10 15 15 O 1.21299 * 119.99971 * 5.13265 * 14 13 12 16 16 N 1.34775 * 120.00324 * 185.13846 * 14 13 12 17 17 C 1.37098 * 120.00151 * 179.97438 * 16 14 13 18 18 H 1.07996 * 120.00152 * 0.02562 * 17 16 14 19 19 C 1.38949 * 120.00041 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00288 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99840 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46738 * 90.00524 * 21 19 17 23 23 H 1.48500 * 109.46995 * 210.00096 * 21 19 17 24 24 H 1.48493 * 109.47330 * 330.00320 * 21 19 17 25 25 C 1.53783 * 113.61843 * 295.10708 * 9 8 6 26 26 C 1.53785 * 87.08118 * 220.01903 * 25 9 8 27 27 C 1.53780 * 87.17267 * 25.38945 * 26 25 9 28 28 H 1.08999 * 109.46833 * 304.56286 * 1 2 3 29 29 H 1.09000 * 109.46583 * 64.55824 * 1 2 3 30 30 H 1.09002 * 109.47263 * 184.55332 * 1 2 3 31 31 H 1.09003 * 109.46816 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47113 * 300.00041 * 3 2 1 33 33 H 1.09003 * 109.46793 * 60.00184 * 3 2 1 34 34 H 1.09007 * 109.47094 * 299.99910 * 4 2 1 35 35 H 1.08995 * 109.47259 * 60.00079 * 4 2 1 36 36 H 1.09003 * 109.46949 * 180.02562 * 4 2 1 37 37 H 0.96999 * 119.99995 * 5.02004 * 8 6 5 38 38 H 0.97002 * 120.00478 * 5.00440 * 12 10 9 39 39 H 1.09005 * 109.47047 * 305.03520 * 13 12 10 40 40 H 1.08999 * 109.47301 * 65.03492 * 13 12 10 41 41 H 0.96998 * 119.99617 * 359.97438 * 16 14 13 42 42 H 0.96997 * 120.00511 * 179.97438 * 20 19 17 43 43 H 1.09001 * 113.61270 * 105.47406 * 25 9 8 44 44 H 1.08997 * 113.61045 * 334.56464 * 25 9 8 45 45 H 1.09001 * 113.61397 * 139.97590 * 26 25 9 46 46 H 1.08998 * 113.61365 * 270.80176 * 26 25 9 47 47 H 1.09003 * 113.61511 * 89.15975 * 27 26 25 48 48 H 1.09005 * 113.61551 * 220.05598 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6973 -1.9871 1.3114 7 8 0.9583 -2.5135 0.5031 8 7 2.2000 -2.7070 2.3338 9 6 1.9453 -4.1477 2.4101 10 6 2.6018 -4.9179 1.2934 11 8 2.1429 -5.9836 0.9403 12 7 3.6989 -4.4226 0.6874 13 6 4.2727 -5.1152 -0.4691 14 6 5.5522 -4.4329 -0.8793 15 8 5.9951 -3.5224 -0.2115 16 7 6.2044 -4.8344 -1.9884 17 6 7.3682 -4.2133 -2.3619 18 1 7.7626 -3.4027 -1.7672 19 6 8.0403 -4.6268 -3.5055 20 7 9.1560 -4.0319 -3.8633 21 14 7.3584 -6.0295 -4.5337 22 1 6.4436 -5.4850 -5.5690 23 1 8.4776 -6.7503 -5.1919 24 1 6.6122 -6.9681 -3.6579 25 6 0.4626 -4.5013 2.6135 26 6 0.9381 -5.5982 3.5808 27 6 2.1993 -4.7473 3.8051 28 1 -0.3633 0.5830 0.8463 29 1 -0.3632 0.4415 -0.9280 30 1 -0.3634 -1.0244 0.0816 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9562 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6766 -1.7490 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7217 -1.2491 37 1 2.7303 -2.2713 3.0193 38 1 4.1086 -3.6073 1.0167 39 1 4.4823 -6.1517 -0.2046 40 1 3.5645 -5.0877 -1.2972 41 1 5.8504 -5.5627 -2.5222 42 1 9.6254 -4.3208 -4.6615 43 1 -0.0208 -4.8895 1.7170 44 1 -0.1121 -3.7117 3.0975 45 1 0.3145 -5.6972 4.4694 46 1 1.1367 -6.5532 3.0944 47 1 2.1002 -4.0250 4.6154 48 1 3.1159 -5.3336 3.8692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001556511742.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:50 Heat of formation + Delta-G solvation = -152.765870 kcal Electronic energy + Delta-G solvation = -31660.837611 eV Core-core repulsion = 27329.991921 eV Total energy + Delta-G solvation = -4330.845689 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.41401 -41.32318 -40.45900 -38.81338 -37.75802 -36.36413 -35.65863 -35.23791 -34.04963 -33.85946 -29.93154 -28.39977 -28.29859 -27.26525 -26.81540 -25.95054 -23.64058 -22.46194 -21.55512 -21.08447 -20.88150 -20.19262 -19.26351 -18.89112 -17.63103 -17.54022 -17.16927 -17.08558 -16.88097 -16.66238 -16.26890 -15.95468 -15.71435 -15.41827 -15.34076 -15.13566 -14.69134 -14.49885 -14.26157 -14.07427 -13.85142 -13.37311 -13.33743 -13.31550 -13.04920 -12.99289 -12.90691 -12.86754 -12.66953 -12.48836 -12.43654 -12.22456 -12.13763 -12.03754 -11.62987 -11.61020 -11.40116 -11.26142 -11.07545 -10.73277 -10.38392 -10.27359 -10.21662 -8.49134 -6.11185 0.98838 1.27176 1.30151 1.38636 1.40232 1.66614 1.72781 1.93524 2.16673 2.77373 3.04067 3.06624 3.32285 3.44983 3.51732 3.72711 3.78493 3.81846 3.93051 3.93305 4.23427 4.29311 4.31423 4.51594 4.60141 4.68193 4.71964 4.73650 4.74804 4.83141 4.86478 4.91092 4.97198 5.01312 5.07042 5.13908 5.16826 5.25549 5.33747 5.43745 5.44637 5.54454 5.83358 6.28485 6.36531 6.43820 6.73198 6.97589 7.23780 7.30283 7.71520 8.67135 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010067 B = 0.003697 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.578638 B = 7572.333952 C = 9449.793932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.129 3.871 3 C -0.137 4.137 4 C -0.182 4.182 5 O -0.367 6.367 6 C 0.646 3.354 7 O -0.578 6.578 8 N -0.690 5.690 9 C 0.136 3.864 10 C 0.529 3.471 11 O -0.559 6.559 12 N -0.705 5.705 13 C 0.116 3.884 14 C 0.444 3.556 15 O -0.611 6.611 16 N -0.576 5.576 17 C -0.332 4.332 18 H 0.064 0.936 19 C -0.004 4.004 20 N -0.922 5.922 21 Si 0.955 3.045 22 H -0.257 1.257 23 H -0.270 1.270 24 H -0.235 1.235 25 C -0.110 4.110 26 C -0.130 4.130 27 C -0.108 4.108 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.042 0.958 37 H 0.423 0.577 38 H 0.409 0.591 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.391 0.609 42 H 0.282 0.718 43 H 0.056 0.944 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.076 0.924 47 H 0.137 0.863 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.941 3.320 13.724 24.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.093 3.907 3 C -0.194 4.194 4 C -0.240 4.240 5 O -0.282 6.282 6 C 0.399 3.601 7 O -0.467 6.467 8 N -0.353 5.353 9 C 0.048 3.952 10 C 0.314 3.686 11 O -0.437 6.437 12 N -0.358 5.358 13 C -0.012 4.012 14 C 0.231 3.769 15 O -0.497 6.497 16 N -0.215 5.215 17 C -0.460 4.460 18 H 0.083 0.917 19 C -0.204 4.204 20 N -0.562 5.562 21 Si 0.775 3.225 22 H -0.182 1.182 23 H -0.195 1.195 24 H -0.159 1.159 25 C -0.149 4.149 26 C -0.167 4.167 27 C -0.146 4.146 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.061 0.939 37 H 0.262 0.738 38 H 0.246 0.754 39 H 0.126 0.874 40 H 0.112 0.888 41 H 0.226 0.774 42 H 0.092 0.908 43 H 0.074 0.926 44 H 0.126 0.874 45 H 0.126 0.874 46 H 0.095 0.905 47 H 0.155 0.845 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.135 3.024 13.274 24.305 hybrid contribution 0.896 -0.044 -0.976 1.326 sum -19.239 2.979 12.297 23.027 Atomic orbital electron populations 1.22430 0.92928 1.03849 1.03878 1.22346 0.95112 0.92386 0.80834 1.21892 1.01995 0.90848 1.04648 1.22485 1.00725 1.02370 0.98372 1.86304 1.73379 1.21809 1.46665 1.18352 0.79151 0.80896 0.81678 1.90926 1.39631 1.72026 1.44164 1.44657 1.57114 1.06816 1.26688 1.22147 0.99509 0.77396 0.96188 1.20621 0.79377 0.85557 0.82999 1.90667 1.64532 1.23200 1.65343 1.45645 1.29175 1.29665 1.31289 1.20908 0.92590 0.97404 0.90299 1.20389 0.87468 0.86326 0.82669 1.90526 1.70057 1.33749 1.55382 1.41924 1.22558 1.33173 1.23879 1.19022 1.00066 1.16951 1.10007 0.91745 1.26014 0.95628 1.00949 0.97835 1.69767 1.17287 1.42899 1.26241 0.85493 0.79313 0.78338 0.79307 1.18176 1.19476 1.15861 1.23102 0.91958 0.99539 1.00324 1.22777 0.96779 0.97060 1.00120 1.23340 1.00320 0.99499 0.91407 0.90900 0.89545 0.91699 0.92266 0.88096 0.90123 0.92095 0.89167 0.93863 0.73823 0.75392 0.87369 0.88794 0.77352 0.90822 0.92553 0.87397 0.87356 0.90508 0.84479 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.51 8.47 71.98 0.61 -2.90 16 2 C 0.13 3.02 1.13 -10.79 -0.01 3.00 16 3 C -0.14 -2.40 8.85 71.98 0.64 -1.76 16 4 C -0.18 -5.06 8.33 71.98 0.60 -4.46 16 5 O -0.37 -9.56 9.94 -55.47 -0.55 -10.11 16 6 C 0.65 17.70 7.62 129.79 0.99 18.69 16 7 O -0.58 -18.74 10.93 19.79 0.22 -18.53 16 8 N -0.69 -14.78 4.49 -551.04 -2.47 -17.26 16 9 C 0.14 3.07 1.10 3.45 0.00 3.08 16 10 C 0.53 16.50 6.40 87.66 0.56 17.06 16 11 O -0.56 -20.01 15.22 -3.05 -0.05 -20.05 16 12 N -0.70 -23.82 5.35 -466.78 -2.50 -26.32 16 13 C 0.12 4.14 6.18 85.63 0.53 4.67 16 14 C 0.44 20.18 7.85 87.66 0.69 20.87 16 15 O -0.61 -32.30 15.27 -3.09 -0.05 -32.34 16 16 N -0.58 -27.22 5.09 -306.98 -1.56 -28.78 16 17 C -0.33 -19.02 10.16 84.04 0.85 -18.16 16 18 H 0.06 4.35 7.39 -2.91 -0.02 4.33 16 19 C 0.00 -0.21 5.50 84.93 0.47 0.26 16 20 N -0.92 -54.20 13.96 21.66 0.30 -53.90 16 21 Si 0.96 38.60 27.74 68.60 1.90 40.51 16 22 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 23 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 24 H -0.24 -8.22 6.52 99.48 0.65 -7.57 16 25 C -0.11 -2.29 6.33 31.12 0.20 -2.09 16 26 C -0.13 -2.06 7.67 31.12 0.24 -1.82 16 27 C -0.11 -1.55 7.40 31.18 0.23 -1.32 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 1.65 5.81 -2.39 -0.01 1.64 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.06 2.02 5.87 -2.38 -0.01 2.00 16 35 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 37 H 0.42 6.58 8.81 -92.71 -0.82 5.76 16 38 H 0.41 14.25 6.83 -92.71 -0.63 13.62 16 39 H 0.11 3.51 8.10 -2.38 -0.02 3.49 16 40 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 41 H 0.39 15.71 5.76 -92.71 -0.53 15.17 16 42 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 43 H 0.06 1.52 7.84 -2.39 -0.02 1.50 16 44 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.11 1.08 8.14 -2.39 -0.02 1.07 16 46 H 0.08 1.58 7.33 -2.39 -0.02 1.56 16 47 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.08 1.27 8.10 -2.38 -0.02 1.25 16 Total: -1.00 -77.98 391.41 0.80 -77.17 By element: Atomic # 1 Polarization: 55.53 SS G_CDS: -1.03 Total: 54.50 kcal Atomic # 6 Polarization: 28.52 SS G_CDS: 6.59 Total: 35.11 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -6.23 Total: -126.26 kcal Atomic # 8 Polarization: -80.60 SS G_CDS: -0.43 Total: -81.03 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 1.90 Total: 40.51 kcal Total: -77.98 0.80 -77.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556511742.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.595 kcal (2) G-P(sol) polarization free energy of solvation -77.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds