Wall clock time and date at job start Sat Apr 11 2020 06:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30375 * 125.96977 * 2 1 4 4 N 1.39914 * 109.02406 * 180.28421 * 3 2 1 5 5 C 1.46500 * 125.74148 * 179.73632 * 4 3 2 6 6 C 1.34418 * 108.51404 * 359.71601 * 4 3 2 7 7 F 1.35100 * 126.34265 * 179.97438 * 6 4 3 8 8 C 1.38502 * 107.30955 * 359.97438 * 6 4 3 9 9 C 1.47169 * 126.45599 * 180.02562 * 8 6 4 10 10 O 1.21633 * 120.00053 * 90.02536 * 9 8 6 11 11 N 1.34777 * 119.99709 * 270.02220 * 9 8 6 12 12 C 1.46499 * 119.99665 * 179.72413 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 N 1.46898 * 109.46947 * 180.02562 * 13 12 11 15 15 C 1.46894 * 111.00387 * 66.04765 * 14 13 12 16 16 C 1.46906 * 110.99589 * 190.00154 * 14 13 12 17 17 C 1.50704 * 109.46950 * 170.00089 * 16 14 13 18 18 O 1.21292 * 120.00070 * 359.97438 * 17 16 14 19 19 N 1.34774 * 119.99609 * 179.97438 * 17 16 14 20 20 C 1.37101 * 119.99744 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00215 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99832 * 179.97438 * 20 19 17 23 23 N 1.31409 * 120.00005 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99640 * 180.02562 * 22 20 19 25 25 H 1.48511 * 109.47058 * 90.00564 * 24 22 20 26 26 H 1.48500 * 109.47028 * 210.00460 * 24 22 20 27 27 H 1.48494 * 109.47364 * 330.00781 * 24 22 20 28 28 H 1.09001 * 109.47317 * 270.18807 * 1 2 3 29 29 H 1.09003 * 109.47009 * 30.19142 * 1 2 3 30 30 H 1.09000 * 109.47410 * 150.18275 * 1 2 3 31 31 H 1.09000 * 109.46970 * 269.97398 * 5 4 3 32 32 H 1.08997 * 109.47391 * 29.97265 * 5 4 3 33 33 H 1.09001 * 109.47052 * 149.97932 * 5 4 3 34 34 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 35 35 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 36 36 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 37 37 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 38 38 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 39 39 H 1.09006 * 109.47151 * 59.99589 * 15 14 13 40 40 H 1.09000 * 109.47496 * 179.97438 * 15 14 13 41 41 H 1.08997 * 109.47031 * 299.99782 * 15 14 13 42 42 H 1.09007 * 109.46952 * 289.99615 * 16 14 13 43 43 H 1.08995 * 109.47632 * 49.99732 * 16 14 13 44 44 H 0.97000 * 120.00714 * 0.02562 * 19 17 16 45 45 H 0.97003 * 119.99431 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6474 -0.0066 5 6 4.7762 1.5354 -0.0141 6 6 3.6479 -0.6963 -0.0043 7 9 4.7576 -1.4668 -0.0094 8 6 2.3374 -1.1444 0.0043 9 6 1.8930 -2.5474 0.0100 10 8 1.7150 -3.1247 1.0657 11 7 1.6832 -3.1926 -1.1546 12 6 1.2466 -4.5910 -1.1489 13 6 1.0903 -5.0823 -2.5894 14 7 0.6519 -6.4844 -2.5837 15 6 -0.6997 -6.6111 -2.0226 16 6 0.7182 -7.0621 -3.9327 17 6 0.5014 -8.5513 -3.8526 18 8 0.3109 -9.0795 -2.7774 19 7 0.5192 -9.2963 -4.9756 20 6 0.3225 -10.6511 -4.9026 21 1 0.1529 -11.1214 -3.9453 22 6 0.3404 -11.4191 -6.0605 23 7 0.5463 -10.8468 -7.2254 24 14 0.0716 -13.2650 -5.9612 25 1 -1.3784 -13.5614 -6.0840 26 1 0.8085 -13.9325 -7.0641 27 1 0.5709 -13.7684 -4.6564 28 1 -0.3634 0.0034 1.0277 29 1 -0.3633 0.8883 -0.5168 30 1 -0.3634 -0.8916 -0.5110 31 1 5.0600 1.7537 -1.0437 32 1 4.5284 2.4644 0.4992 33 1 5.6073 1.0487 0.4963 34 1 1.8255 -2.7323 -1.9965 35 1 1.9895 -5.2015 -0.6354 36 1 0.2904 -4.6710 -0.6319 37 1 0.3475 -4.4718 -3.1028 38 1 2.0466 -5.0024 -3.1065 39 1 -1.3986 -6.0289 -2.6233 40 1 -0.9997 -7.6590 -2.0306 41 1 -0.7041 -6.2394 -0.9980 42 1 -0.0552 -6.6155 -4.5577 43 1 1.6975 -6.8604 -4.3667 44 1 0.6720 -8.8740 -5.8354 45 1 0.5591 -11.3830 -8.0337 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567316951.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:04 Heat of formation + Delta-G solvation = -22.344358 kcal Electronic energy + Delta-G solvation = -28651.077140 eV Core-core repulsion = 24234.719398 eV Total energy + Delta-G solvation = -4416.357742 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.165 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.75000 -41.83386 -39.53185 -38.60664 -36.76831 -34.69225 -34.59476 -33.79046 -31.25875 -31.08411 -30.15241 -29.20497 -27.69055 -26.60052 -25.28250 -24.00825 -22.67104 -21.23729 -21.20307 -20.42684 -19.15991 -18.39561 -17.84496 -17.39200 -17.14773 -16.53279 -16.34491 -15.96273 -15.66206 -15.17518 -15.04191 -14.75890 -14.56921 -14.37633 -14.06898 -14.00595 -13.83839 -13.71155 -13.45735 -13.29543 -13.16526 -12.91469 -12.84716 -12.59529 -12.12087 -11.85570 -11.51849 -11.42805 -11.33750 -11.26553 -11.03698 -10.93441 -10.38131 -10.26906 -10.20644 -9.83312 -9.47066 -9.21349 -9.20351 -8.46976 -7.98057 -7.87995 -6.41147 -3.81732 0.89178 1.42229 1.79429 2.29458 2.95828 3.18585 3.27353 3.33563 3.35489 3.84339 3.91057 4.07879 4.26716 4.30152 4.50173 4.59657 4.63078 4.76750 4.79443 4.88224 5.00990 5.13429 5.17762 5.25496 5.26659 5.38225 5.40847 5.64544 5.70060 5.83818 5.86811 5.90921 5.94343 6.02188 6.17881 6.22570 6.28645 6.57179 6.87922 7.19334 7.28101 7.34168 7.56178 8.00102 8.07236 8.62606 9.19075 9.55133 10.07068 10.76623 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025793 B = 0.001688 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.316369 B =16585.427564 C =16920.629485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.134 3.866 3 N -0.271 5.271 4 N -0.374 5.374 5 C 0.092 3.908 6 C 0.296 3.704 7 F -0.086 7.086 8 C -0.291 4.291 9 C 0.598 3.402 10 O -0.524 6.524 11 N -0.718 5.718 12 C 0.121 3.879 13 C 0.044 3.956 14 N -0.515 5.515 15 C 0.018 3.982 16 C 0.047 3.953 17 C 0.444 3.556 18 O -0.576 6.576 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.401 0.599 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.037 0.963 38 H 0.079 0.921 39 H 0.016 0.984 40 H 0.098 0.902 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.088 0.912 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.074 27.955 8.650 29.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.033 4.033 3 N -0.094 5.094 4 N -0.158 5.158 5 C -0.049 4.049 6 C 0.149 3.851 7 F -0.065 7.065 8 C -0.307 4.307 9 C 0.382 3.618 10 O -0.399 6.399 11 N -0.370 5.370 12 C -0.003 4.003 13 C -0.084 4.084 14 N -0.239 5.239 15 C -0.130 4.130 16 C -0.084 4.084 17 C 0.229 3.771 18 O -0.460 6.460 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.235 0.765 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.097 0.903 39 H 0.034 0.966 40 H 0.116 0.884 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.107 0.893 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.362 28.114 10.254 30.402 hybrid contribution 0.113 -0.886 -1.619 1.849 sum 5.475 27.228 8.635 29.084 Atomic orbital electron populations 1.20343 0.85024 1.04178 1.04237 1.22223 0.97255 0.87917 0.95902 1.77334 0.84119 1.21141 1.26770 1.48698 1.07364 1.02609 1.57171 1.22103 0.83572 0.94705 1.04495 1.17797 0.83373 0.81872 1.02104 1.91685 1.49624 1.71502 1.93717 1.19677 0.90370 0.95595 1.25044 1.16952 0.77156 0.83886 0.83850 1.90840 1.50511 1.67501 1.31026 1.45930 1.68981 1.13709 1.08340 1.21403 1.01380 0.80088 0.97414 1.22251 1.00912 0.89738 0.95544 1.61436 1.26681 1.14078 1.21725 1.22632 0.87164 1.04627 0.98568 1.21870 1.01880 0.95414 0.89256 1.19709 0.84604 0.87613 0.85166 1.90495 1.54178 1.73128 1.28173 1.41862 1.62861 1.07890 1.07523 1.19706 1.45669 0.82144 0.95247 0.87879 1.25258 0.97391 1.00657 0.94670 1.69613 1.49868 1.36835 0.98081 0.85857 0.78318 0.82083 0.78031 1.20446 1.20959 1.19397 0.89305 0.89768 0.89797 0.89624 0.88033 0.88902 0.76543 0.90036 0.90828 0.94462 0.90276 0.96599 0.88387 0.91777 0.93335 0.89330 0.77512 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.28 36.00 0.37 -0.14 16 2 C 0.13 1.24 7.26 -82.01 -0.60 0.64 16 3 N -0.27 -2.56 12.49 33.91 0.42 -2.13 16 4 N -0.37 -3.06 3.98 -67.94 -0.27 -3.33 16 5 C 0.09 0.34 11.43 59.85 0.68 1.02 16 6 C 0.30 2.89 8.70 -16.32 -0.14 2.74 16 7 F -0.09 -0.84 17.31 2.25 0.04 -0.80 16 8 C -0.29 -3.08 5.89 -104.97 -0.62 -3.69 16 9 C 0.60 7.36 7.35 -12.63 -0.09 7.27 16 10 O -0.52 -8.58 17.11 5.25 0.09 -8.49 16 11 N -0.72 -7.22 5.55 -61.46 -0.34 -7.56 16 12 C 0.12 1.43 5.60 -4.04 -0.02 1.41 16 13 C 0.04 0.52 5.07 -3.82 -0.02 0.50 16 14 N -0.51 -8.31 4.50 -244.36 -1.10 -9.41 16 15 C 0.02 0.28 8.96 60.06 0.54 0.82 16 16 C 0.05 0.82 5.45 -4.97 -0.03 0.79 16 17 C 0.44 10.33 7.47 -10.98 -0.08 10.25 16 18 O -0.58 -15.38 13.91 5.55 0.08 -15.31 16 19 N -0.56 -14.15 5.29 -10.96 -0.06 -14.21 16 20 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 24 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.51 8.01 -51.93 -0.42 0.09 16 31 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.40 2.97 8.46 -40.82 -0.35 2.62 16 35 H 0.08 1.14 8.14 -51.92 -0.42 0.71 16 36 H 0.07 0.92 6.55 -51.93 -0.34 0.58 16 37 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 38 H 0.08 0.84 7.93 -51.93 -0.41 0.43 16 39 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.10 1.92 5.82 -51.93 -0.30 1.61 16 41 H 0.06 0.92 6.47 -51.93 -0.34 0.58 16 42 H 0.05 0.76 8.12 -51.92 -0.42 0.34 16 43 H 0.09 1.37 7.93 -51.93 -0.41 0.96 16 44 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 45 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 390.48 15.07 5.88 5.88 Total: -1.00 -35.32 390.48 -6.00 -41.32 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -6.20 Total: 8.04 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: -0.25 Total: 13.68 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: -0.62 Total: -60.32 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: 0.17 Total: -23.80 kcal Atomic # 9 Polarization: -0.84 SS G_CDS: 0.04 Total: -0.80 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.32 -6.00 -41.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567316951.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.980 kcal (2) G-P(sol) polarization free energy of solvation -35.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds