Wall clock time and date at job start Sat Apr 11 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30375 * 125.96977 * 2 1 4 4 N 1.39914 * 109.02406 * 180.28421 * 3 2 1 5 5 C 1.46500 * 125.74148 * 179.73632 * 4 3 2 6 6 C 1.34418 * 108.51404 * 359.71601 * 4 3 2 7 7 F 1.35100 * 126.34265 * 179.97438 * 6 4 3 8 8 C 1.38502 * 107.30955 * 359.97438 * 6 4 3 9 9 C 1.47169 * 126.45599 * 180.02562 * 8 6 4 10 10 O 1.21633 * 120.00053 * 90.02536 * 9 8 6 11 11 N 1.34777 * 119.99709 * 270.02220 * 9 8 6 12 12 C 1.46499 * 119.99665 * 179.72413 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 N 1.46898 * 109.46947 * 180.02562 * 13 12 11 15 15 C 1.46894 * 111.00387 * 66.04765 * 14 13 12 16 16 C 1.46906 * 110.99589 * 190.00154 * 14 13 12 17 17 C 1.50704 * 109.46950 * 170.00089 * 16 14 13 18 18 O 1.21292 * 120.00070 * 359.97438 * 17 16 14 19 19 N 1.34774 * 119.99609 * 179.97438 * 17 16 14 20 20 C 1.37101 * 119.99744 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00215 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99832 * 179.97438 * 20 19 17 23 23 N 1.31409 * 120.00005 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99640 * 180.02562 * 22 20 19 25 25 H 1.48511 * 109.47058 * 90.00564 * 24 22 20 26 26 H 1.48500 * 109.47028 * 210.00460 * 24 22 20 27 27 H 1.48494 * 109.47364 * 330.00781 * 24 22 20 28 28 H 1.09001 * 109.47317 * 270.18807 * 1 2 3 29 29 H 1.09003 * 109.47009 * 30.19142 * 1 2 3 30 30 H 1.09000 * 109.47410 * 150.18275 * 1 2 3 31 31 H 1.09000 * 109.46970 * 269.97398 * 5 4 3 32 32 H 1.08997 * 109.47391 * 29.97265 * 5 4 3 33 33 H 1.09001 * 109.47052 * 149.97932 * 5 4 3 34 34 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 35 35 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 36 36 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 37 37 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 38 38 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 39 39 H 1.09006 * 109.47151 * 59.99589 * 15 14 13 40 40 H 1.09000 * 109.47496 * 179.97438 * 15 14 13 41 41 H 1.08997 * 109.47031 * 299.99782 * 15 14 13 42 42 H 1.09007 * 109.46952 * 289.99615 * 16 14 13 43 43 H 1.08995 * 109.47632 * 49.99732 * 16 14 13 44 44 H 0.97000 * 120.00714 * 0.02562 * 19 17 16 45 45 H 0.97003 * 119.99431 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6474 -0.0066 5 6 4.7762 1.5354 -0.0141 6 6 3.6479 -0.6963 -0.0043 7 9 4.7576 -1.4668 -0.0094 8 6 2.3374 -1.1444 0.0043 9 6 1.8930 -2.5474 0.0100 10 8 1.7150 -3.1247 1.0657 11 7 1.6832 -3.1926 -1.1546 12 6 1.2466 -4.5910 -1.1489 13 6 1.0903 -5.0823 -2.5894 14 7 0.6519 -6.4844 -2.5837 15 6 -0.6997 -6.6111 -2.0226 16 6 0.7182 -7.0621 -3.9327 17 6 0.5014 -8.5513 -3.8526 18 8 0.3109 -9.0795 -2.7774 19 7 0.5192 -9.2963 -4.9756 20 6 0.3225 -10.6511 -4.9026 21 1 0.1529 -11.1214 -3.9453 22 6 0.3404 -11.4191 -6.0605 23 7 0.5463 -10.8468 -7.2254 24 14 0.0716 -13.2650 -5.9612 25 1 -1.3784 -13.5614 -6.0840 26 1 0.8085 -13.9325 -7.0641 27 1 0.5709 -13.7684 -4.6564 28 1 -0.3634 0.0034 1.0277 29 1 -0.3633 0.8883 -0.5168 30 1 -0.3634 -0.8916 -0.5110 31 1 5.0600 1.7537 -1.0437 32 1 4.5284 2.4644 0.4992 33 1 5.6073 1.0487 0.4963 34 1 1.8255 -2.7323 -1.9965 35 1 1.9895 -5.2015 -0.6354 36 1 0.2904 -4.6710 -0.6319 37 1 0.3475 -4.4718 -3.1028 38 1 2.0466 -5.0024 -3.1065 39 1 -1.3986 -6.0289 -2.6233 40 1 -0.9997 -7.6590 -2.0306 41 1 -0.7041 -6.2394 -0.9980 42 1 -0.0552 -6.6155 -4.5577 43 1 1.6975 -6.8604 -4.3667 44 1 0.6720 -8.8740 -5.8354 45 1 0.5591 -11.3830 -8.0337 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567316951.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:03 Heat of formation + Delta-G solvation = -50.829945 kcal Electronic energy + Delta-G solvation = -28652.312368 eV Core-core repulsion = 24234.719398 eV Total energy + Delta-G solvation = -4417.592970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.165 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.48759 -42.51710 -40.58388 -40.22008 -38.14286 -36.00317 -35.50390 -35.21185 -33.25416 -31.88015 -30.76503 -30.18449 -29.03031 -27.30006 -26.82586 -25.35904 -23.53760 -22.31503 -21.94393 -21.26415 -20.92820 -19.83232 -19.14987 -18.14203 -17.92565 -17.65310 -17.30442 -17.25149 -16.73171 -16.54720 -16.24170 -15.95782 -15.76433 -15.52224 -15.38088 -15.01294 -14.85939 -14.50345 -14.43715 -14.42354 -14.07920 -13.75101 -13.70852 -13.43563 -13.28486 -13.04847 -13.01594 -12.90769 -12.55880 -12.52588 -12.38243 -12.15125 -12.09553 -12.04409 -11.43767 -11.26383 -10.44932 -10.26609 -10.17725 -9.97041 -9.92464 -9.20560 -8.44393 -5.92365 0.18931 0.84684 1.09574 1.35945 1.39168 1.42969 1.55437 2.02744 2.09261 2.32008 2.71067 2.92141 3.22877 3.27409 3.46180 3.71789 3.80095 3.95743 4.05636 4.13479 4.22694 4.28346 4.29935 4.39818 4.49997 4.55876 4.58686 4.66944 4.68482 4.71249 4.75615 4.86139 4.89855 4.97556 5.25266 5.29325 5.30498 5.43777 5.58702 5.87946 6.07608 6.19643 6.22245 6.43303 6.64142 7.10902 7.16349 7.60284 8.16803 8.72958 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025793 B = 0.001688 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.316369 B =16585.427564 C =16920.629485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.132 3.868 3 N -0.283 5.283 4 N -0.367 5.367 5 C 0.080 3.920 6 C 0.291 3.709 7 F -0.088 7.088 8 C -0.310 4.310 9 C 0.602 3.398 10 O -0.572 6.572 11 N -0.700 5.700 12 C 0.129 3.871 13 C 0.053 3.947 14 N -0.540 5.540 15 C 0.024 3.976 16 C 0.060 3.940 17 C 0.440 3.560 18 O -0.615 6.615 19 N -0.575 5.575 20 C -0.331 4.331 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.991 3.009 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.275 1.275 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.417 0.583 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.037 0.963 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.114 0.886 44 H 0.397 0.603 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.430 29.947 7.470 31.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.034 4.034 3 N -0.106 5.106 4 N -0.151 5.151 5 C -0.059 4.059 6 C 0.142 3.858 7 F -0.068 7.068 8 C -0.327 4.327 9 C 0.387 3.613 10 O -0.451 6.451 11 N -0.351 5.351 12 C 0.004 3.996 13 C -0.075 4.075 14 N -0.265 5.265 15 C -0.124 4.124 16 C -0.071 4.071 17 C 0.227 3.773 18 O -0.501 6.501 19 N -0.213 5.213 20 C -0.461 4.461 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.200 1.200 28 H 0.109 0.891 29 H 0.120 0.880 30 H 0.106 0.894 31 H 0.122 0.878 32 H 0.133 0.867 33 H 0.125 0.875 34 H 0.254 0.746 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.115 0.885 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.132 0.868 44 H 0.230 0.770 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.735 30.168 9.020 32.006 hybrid contribution 0.055 -1.411 -1.205 1.856 sum 5.790 28.757 7.815 30.358 Atomic orbital electron populations 1.20455 0.83428 1.05207 1.04711 1.22574 0.98308 0.87217 0.95299 1.77309 0.84731 1.21327 1.27196 1.49044 1.07960 1.02421 1.55696 1.22521 0.82533 0.94679 1.06159 1.17827 0.83088 0.82645 1.02205 1.91676 1.49639 1.71702 1.93749 1.19606 0.91216 0.94927 1.26937 1.17191 0.76228 0.84431 0.83482 1.90815 1.52788 1.68731 1.32760 1.45734 1.67817 1.12924 1.08670 1.21193 1.00285 0.80588 0.97491 1.22240 1.02411 0.87384 0.95474 1.61317 1.26873 1.17084 1.21182 1.22480 0.87812 1.02248 0.99875 1.21737 1.04030 0.90710 0.90581 1.20841 0.82326 0.90178 0.83922 1.90478 1.55280 1.74783 1.29601 1.41924 1.63676 1.07328 1.08331 1.19641 1.47849 0.83858 0.94745 0.90448 1.25994 0.96586 1.04585 0.94091 1.69667 1.49732 1.38275 0.98455 0.84956 0.78545 0.77083 0.77919 1.19664 1.19579 1.19983 0.89058 0.88031 0.89441 0.87789 0.86716 0.87511 0.74623 0.92463 0.91518 0.91714 0.88539 0.94461 0.92615 0.90652 0.90829 0.86828 0.76959 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.28 71.23 0.73 -0.17 16 2 C 0.13 2.28 7.26 43.55 0.32 2.59 16 3 N -0.28 -4.88 12.49 -46.64 -0.58 -5.47 16 4 N -0.37 -5.41 3.98 -368.86 -1.47 -6.87 16 5 C 0.08 0.41 11.43 127.77 1.46 1.87 16 6 C 0.29 5.37 8.70 84.36 0.73 6.11 16 7 F -0.09 -1.64 17.31 44.97 0.78 -0.86 16 8 C -0.31 -6.32 5.89 -20.09 -0.12 -6.43 16 9 C 0.60 14.55 7.35 86.59 0.64 15.19 16 10 O -0.57 -19.10 17.11 -4.14 -0.07 -19.18 16 11 N -0.70 -13.04 5.55 -466.61 -2.59 -15.63 16 12 C 0.13 2.90 5.60 86.38 0.48 3.38 16 13 C 0.05 1.08 5.07 86.30 0.44 1.52 16 14 N -0.54 -16.58 4.50 -927.03 -4.17 -20.75 16 15 C 0.02 0.74 8.96 127.69 1.14 1.88 16 16 C 0.06 1.97 5.45 85.56 0.47 2.44 16 17 C 0.44 20.64 7.47 87.66 0.66 21.29 16 18 O -0.62 -33.92 13.91 -3.07 -0.04 -33.96 16 19 N -0.57 -29.17 5.29 -306.98 -1.62 -30.79 16 20 C -0.33 -18.78 9.68 84.04 0.81 -17.97 16 21 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 22 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 23 N -0.92 -49.32 13.05 21.66 0.28 -49.04 16 24 Si 0.99 43.05 29.55 68.60 2.03 45.08 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 27 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 28 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 0.92 8.01 -2.39 -0.02 0.90 16 31 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.11 0.26 8.14 -2.39 -0.02 0.25 16 34 H 0.42 5.14 8.46 -92.71 -0.78 4.35 16 35 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.07 1.62 6.55 -2.39 -0.02 1.60 16 37 H 0.06 1.04 8.12 -2.39 -0.02 1.02 16 38 H 0.10 1.69 7.93 -2.38 -0.02 1.67 16 39 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.06 2.23 5.82 -2.39 -0.01 2.21 16 41 H 0.07 2.12 6.47 -2.39 -0.02 2.11 16 42 H 0.07 2.08 8.12 -2.38 -0.02 2.06 16 43 H 0.11 3.17 7.93 -2.39 -0.02 3.15 16 44 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16 45 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -78.73 390.48 0.30 -78.43 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: -0.46 Total: 27.57 kcal Atomic # 6 Polarization: 23.24 SS G_CDS: 8.23 Total: 31.47 kcal Atomic # 7 Polarization: -118.39 SS G_CDS: -10.15 Total: -128.55 kcal Atomic # 8 Polarization: -53.02 SS G_CDS: -0.11 Total: -53.14 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.78 Total: -0.86 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -78.73 0.30 -78.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567316951.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.599 kcal (2) G-P(sol) polarization free energy of solvation -78.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds