Wall clock time and date at job start Sat Apr 11 2020 06:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.46685 * 2 1 4 4 N 1.30835 * 125.95915 * 265.00044 * 3 2 1 5 5 C 1.33244 * 109.82681 * 179.97438 * 4 3 2 6 6 C 1.50707 * 125.52397 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.47027 * 344.99983 * 6 5 4 8 8 C 1.53001 * 109.46670 * 104.99945 * 6 5 4 9 9 N 1.46888 * 109.47072 * 224.99872 * 6 5 4 10 10 C 1.46899 * 111.00365 * 155.00167 * 9 6 5 11 11 C 1.52997 * 109.47722 * 179.97438 * 10 9 6 12 12 N 1.46494 * 109.47231 * 180.02562 * 11 10 9 13 13 C 1.46497 * 120.00204 * 90.00255 * 12 11 10 14 14 C 1.34774 * 120.00312 * 270.00037 * 12 11 10 15 15 O 1.21293 * 119.99813 * 359.97438 * 14 12 11 16 16 C 1.50699 * 120.00427 * 180.02562 * 14 12 11 17 17 S 1.81005 * 109.47213 * 180.02562 * 16 14 12 18 18 C 1.76202 * 99.99841 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00176 * 359.97438 * 18 17 16 20 20 C 1.38796 * 119.99856 * 180.02562 * 18 17 16 21 21 N 1.31640 * 120.00078 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99990 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47217 * 89.99850 * 22 20 18 24 24 H 1.48505 * 109.47036 * 209.99502 * 22 20 18 25 25 H 1.48500 * 109.47120 * 329.99588 * 22 20 18 26 26 N 1.30712 * 108.94650 * 0.02562 * 5 4 3 27 27 N 1.34424 * 125.96453 * 84.98060 * 3 2 1 28 28 H 0.97005 * 126.82354 * 0.02562 * 27 3 2 29 29 H 1.08995 * 109.47135 * 299.99660 * 1 2 3 30 30 H 1.08993 * 109.47605 * 60.00144 * 1 2 3 31 31 H 1.09003 * 109.46746 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46864 * 239.99972 * 2 1 3 33 33 H 1.09001 * 109.47361 * 119.99696 * 2 1 3 34 34 H 1.08999 * 109.47364 * 60.00244 * 8 6 5 35 35 H 1.09002 * 109.46854 * 179.97438 * 8 6 5 36 36 H 1.09001 * 109.47520 * 299.99856 * 8 6 5 37 37 H 1.00903 * 111.00332 * 31.04328 * 9 6 5 38 38 H 1.08997 * 109.46852 * 300.00543 * 10 9 6 39 39 H 1.09004 * 109.46880 * 59.99796 * 10 9 6 40 40 H 1.09001 * 109.47050 * 300.00113 * 11 10 9 41 41 H 1.09004 * 109.47012 * 59.99996 * 11 10 9 42 42 H 1.09006 * 109.47391 * 89.99965 * 13 12 11 43 43 H 1.09003 * 109.47603 * 209.99904 * 13 12 11 44 44 H 1.08999 * 109.46899 * 329.99870 * 13 12 11 45 45 H 1.09003 * 109.46699 * 299.99756 * 16 14 12 46 46 H 1.08997 * 109.47395 * 60.00089 * 16 14 12 47 47 H 0.96997 * 119.99802 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3753 2.1144 -1.0550 5 6 2.7709 3.3322 -0.6862 6 6 3.2410 4.4197 -1.6177 7 1 3.4631 3.9904 -2.5947 8 6 2.1441 5.4765 -1.7623 9 7 4.4528 5.0435 -1.0700 10 6 5.2626 5.6469 -2.1368 11 6 6.5129 6.2857 -1.5290 12 7 7.3200 6.8879 -2.5929 13 6 7.0958 8.2823 -2.9824 14 6 8.2689 6.1592 -3.2134 15 8 8.4549 5.0049 -2.8907 16 6 9.0996 6.7789 -4.3075 17 16 10.2759 5.5561 -4.9380 18 6 11.0901 6.5205 -6.1676 19 1 10.7983 7.5477 -6.3289 20 6 12.1056 5.9596 -6.9295 21 7 12.4609 4.7074 -6.7331 22 14 12.9693 6.9822 -8.2325 23 1 14.1395 7.6680 -7.6283 24 1 13.4283 6.0967 -9.3328 25 1 12.0265 7.9946 -8.7724 26 7 2.6852 3.4305 0.6144 27 7 2.2056 2.1969 1.0838 28 1 2.0338 1.9532 2.0069 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.9220 5.9058 -0.7854 35 1 2.4842 6.2633 -2.4357 36 1 1.2448 5.0136 -2.1687 37 1 4.9935 4.3779 -0.5382 38 1 5.5574 4.8763 -2.8491 39 1 4.6774 6.4105 -2.6493 40 1 6.2176 7.0564 -0.8170 41 1 7.0982 5.5224 -1.0162 42 1 7.7308 8.9338 -2.3820 43 1 7.3398 8.4087 -4.0372 44 1 6.0501 8.5418 -2.8177 45 1 8.4477 7.1066 -5.1173 46 1 9.6437 7.6355 -3.9097 47 1 13.1709 4.3156 -7.2653 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567466702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:08 Heat of formation + Delta-G solvation = 17.929528 kcal Electronic energy + Delta-G solvation = -26284.476238 eV Core-core repulsion = 22436.078079 eV Total energy + Delta-G solvation = -3848.398159 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.28938 -40.88389 -38.36224 -36.62236 -35.10726 -34.58334 -33.79465 -32.66170 -31.08227 -30.44372 -28.71373 -27.69262 -27.13472 -25.41870 -24.99337 -23.27079 -21.74495 -21.17100 -20.53836 -19.52917 -18.96533 -18.11575 -17.31312 -17.20031 -16.88053 -16.78588 -16.67664 -16.03135 -15.86246 -15.56147 -15.25362 -15.05964 -14.63260 -14.48129 -14.19935 -14.17768 -13.65638 -13.54054 -13.52242 -13.25799 -13.18724 -13.12852 -12.93719 -12.89200 -12.69855 -12.63427 -12.56406 -12.47888 -12.01452 -11.98806 -11.71007 -11.20147 -11.16598 -11.14068 -10.92132 -10.59413 -10.26634 -9.74508 -9.63690 -8.67750 -8.34476 -6.13133 0.50164 1.25614 1.42868 1.45824 1.55190 1.57142 1.63748 1.69769 2.07933 2.27695 2.73261 2.99630 3.11480 3.28278 3.52664 3.71040 3.76702 3.99537 4.07538 4.13460 4.22796 4.25580 4.28485 4.36256 4.38604 4.48992 4.50475 4.62168 4.67486 4.75230 4.79450 4.84706 4.94936 4.96526 5.00779 5.02473 5.15755 5.20024 5.27577 5.32618 5.41786 5.51776 5.80734 6.08823 6.14656 6.19834 6.27479 7.01802 7.06572 7.13793 8.74832 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017904 B = 0.001803 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.554215 B =15526.604172 C =16472.341380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.046 4.046 3 C 0.290 3.710 4 N -0.573 5.573 5 C 0.211 3.789 6 C 0.179 3.821 7 H 0.061 0.939 8 C -0.123 4.123 9 N -0.664 5.664 10 C 0.054 3.946 11 C 0.124 3.876 12 N -0.609 5.609 13 C 0.071 3.929 14 C 0.528 3.472 15 O -0.567 6.567 16 C -0.123 4.123 17 S -0.157 6.157 18 C -0.545 4.545 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.257 1.257 26 N -0.311 5.311 27 N -0.473 5.473 28 H 0.455 0.545 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.339 0.661 38 H 0.008 0.992 39 H 0.097 0.903 40 H 0.116 0.884 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.103 0.897 45 H 0.109 0.891 46 H 0.108 0.892 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.280 -0.176 16.049 31.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.086 4.086 3 C 0.011 3.989 4 N -0.303 5.303 5 C -0.072 4.072 6 C 0.067 3.933 7 H 0.078 0.922 8 C -0.182 4.182 9 N -0.296 5.296 10 C -0.076 4.076 11 C 0.001 3.999 12 N -0.343 5.343 13 C -0.071 4.071 14 C 0.316 3.684 15 O -0.445 6.445 16 C -0.274 4.274 17 S 0.071 5.929 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.549 5.549 22 Si 0.821 3.179 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.181 1.181 26 N -0.140 5.140 27 N -0.193 5.193 28 H 0.304 0.696 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.120 0.880 33 H 0.138 0.862 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.157 0.843 38 H 0.027 0.973 39 H 0.115 0.885 40 H 0.134 0.866 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.121 0.879 45 H 0.127 0.873 46 H 0.126 0.874 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -27.043 -0.836 16.685 31.787 hybrid contribution 0.871 0.281 -0.946 1.316 sum -26.172 -0.554 15.740 30.546 Atomic orbital electron populations 1.21734 0.92161 1.04146 1.02155 1.20447 0.97528 0.83879 1.06698 1.25099 0.94258 0.97267 0.82241 1.70362 1.23423 1.05035 1.31467 1.24323 0.98753 0.93441 0.90677 1.19796 0.91821 0.89276 0.92444 0.92155 1.21690 0.96043 0.97509 1.02967 1.60588 1.07347 1.37520 1.24141 1.22294 0.94158 0.98497 0.92670 1.21339 0.90264 0.99231 0.89096 1.47806 1.35001 1.14066 1.37414 1.22136 1.04219 0.79014 1.01739 1.20222 0.80168 0.85686 0.82323 1.90681 1.69232 1.19105 1.65523 1.23375 1.00839 1.03345 0.99820 1.85611 1.41764 1.19463 1.46096 1.23199 1.23143 1.00636 1.22293 0.89802 1.26154 0.96823 0.96512 0.99732 1.70197 1.29432 1.14391 1.40837 0.84935 0.78337 0.77813 0.76779 1.19277 1.20344 1.18057 1.77995 1.21997 1.01883 1.12140 1.48000 1.50635 1.09327 1.11292 0.69581 0.91966 0.93472 0.88883 0.87978 0.86244 0.91790 0.90198 0.92044 0.84321 0.97324 0.88510 0.86582 0.92457 0.90938 0.90623 0.87882 0.87272 0.87365 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.89 71.98 0.71 -0.10 16 2 C -0.05 -0.35 6.56 29.85 0.20 -0.15 16 3 C 0.29 4.83 7.49 138.23 1.04 5.87 16 4 N -0.57 -13.93 11.19 -179.72 -2.01 -15.94 16 5 C 0.21 5.16 6.64 138.63 0.92 6.08 16 6 C 0.18 4.02 3.16 44.17 0.14 4.16 16 7 H 0.06 1.51 7.80 -2.39 -0.02 1.49 16 8 C -0.12 -2.21 9.40 71.98 0.68 -1.53 16 9 N -0.66 -14.84 6.29 -495.47 -3.12 -17.96 16 10 C 0.05 1.25 5.81 86.30 0.50 1.75 16 11 C 0.12 2.97 5.67 86.38 0.49 3.46 16 12 N -0.61 -16.45 2.87 -846.76 -2.43 -18.88 16 13 C 0.07 1.23 10.24 127.77 1.31 2.53 16 14 C 0.53 20.48 7.69 87.66 0.67 21.16 16 15 O -0.57 -27.41 15.44 -3.07 -0.05 -27.46 16 16 C -0.12 -5.01 4.71 71.24 0.34 -4.67 16 17 S -0.16 -8.88 20.57 -56.49 -1.16 -10.05 16 18 C -0.54 -31.44 9.50 67.95 0.65 -30.80 16 19 H 0.08 4.47 7.80 -2.91 -0.02 4.44 16 20 C 0.01 0.71 5.49 84.86 0.47 1.18 16 21 N -0.91 -56.71 13.22 21.65 0.29 -56.42 16 22 Si 1.00 43.87 29.55 68.60 2.03 45.90 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 25 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 26 N -0.31 -7.09 12.78 -51.33 -0.66 -7.74 16 27 N -0.47 -7.31 7.45 -50.71 -0.38 -7.69 16 28 H 0.46 3.41 8.96 -213.09 -1.91 1.50 16 29 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.21 7.45 -2.39 -0.02 1.19 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.34 8.47 8.35 -89.69 -0.75 7.72 16 38 H 0.01 0.25 8.05 -2.39 -0.02 0.24 16 39 H 0.10 1.84 7.44 -2.39 -0.02 1.82 16 40 H 0.12 2.07 8.07 -2.39 -0.02 2.05 16 41 H 0.06 1.69 7.42 -2.39 -0.02 1.67 16 42 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 43 H 0.08 1.35 6.44 -2.39 -0.02 1.34 16 44 H 0.10 1.16 8.07 -2.39 -0.02 1.15 16 45 H 0.11 4.00 7.40 -2.39 -0.02 3.99 16 46 H 0.11 3.99 8.11 -2.40 -0.02 3.97 16 47 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -85.20 407.75 -1.06 -86.26 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -1.67 Total: 21.04 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 8.10 Total: 8.94 kcal Atomic # 7 Polarization: -116.33 SS G_CDS: -8.31 Total: -124.63 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.05 Total: -27.46 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.16 Total: -10.05 kcal Total: -85.20 -1.06 -86.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567466702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.192 kcal (2) G-P(sol) polarization free energy of solvation -85.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds