Wall clock time and date at job start Sat Apr 11 2020 06:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30829 * 125.96188 * 2 1 4 4 C 1.33241 * 109.83275 * 180.02562 * 3 2 1 5 5 C 1.50695 * 125.53187 * 180.02562 * 4 3 2 6 6 N 1.46901 * 109.47381 * 89.99306 * 5 4 3 7 7 C 1.46899 * 110.99867 * 175.81196 * 6 5 4 8 8 H 1.09000 * 109.47200 * 326.40029 * 7 6 5 9 9 C 1.52998 * 109.47352 * 206.40164 * 7 6 5 10 10 N 1.46508 * 109.47034 * 54.99810 * 9 7 6 11 11 C 1.34770 * 120.00002 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00321 * 359.72844 * 11 10 9 13 13 C 1.50703 * 120.00040 * 179.72389 * 11 10 9 14 14 S 1.80995 * 109.47218 * 180.02562 * 13 11 10 15 15 C 1.76200 * 100.00120 * 180.02562 * 14 13 11 16 16 H 1.08006 * 119.99670 * 0.02562 * 15 14 13 17 17 C 1.38801 * 120.00282 * 179.97438 * 15 14 13 18 18 N 1.31628 * 119.99834 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99888 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47074 * 60.00218 * 19 17 15 21 21 H 1.48505 * 109.46905 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47073 * 300.00007 * 19 17 15 23 23 C 1.52999 * 109.47389 * 86.40145 * 7 6 5 24 24 C 1.52999 * 109.47084 * 62.49286 * 23 7 6 25 25 C 1.53000 * 109.47269 * 182.49502 * 23 7 6 26 26 N 1.30717 * 108.94239 * 0.25857 * 4 3 2 27 27 N 1.34425 * 125.96132 * 180.02562 * 2 1 3 28 28 H 0.97001 * 126.82408 * 359.97438 * 27 2 1 29 29 H 1.09003 * 109.47018 * 89.97586 * 1 2 3 30 30 H 1.08997 * 109.47219 * 209.97568 * 1 2 3 31 31 H 1.09004 * 109.46999 * 329.97882 * 1 2 3 32 32 H 1.09011 * 109.46837 * 329.99363 * 5 4 3 33 33 H 1.09000 * 109.47476 * 210.00033 * 5 4 3 34 34 H 1.00893 * 110.99968 * 51.86098 * 6 5 4 35 35 H 1.09002 * 109.46884 * 295.00287 * 9 7 6 36 36 H 1.08996 * 109.47538 * 174.99767 * 9 7 6 37 37 H 0.97000 * 119.99840 * 359.72538 * 10 9 7 38 38 H 1.09003 * 109.46981 * 300.00492 * 13 11 10 39 39 H 1.08998 * 109.46995 * 60.00100 * 13 11 10 40 40 H 0.97001 * 120.00094 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.47251 * 302.49548 * 23 7 6 42 42 H 1.08999 * 109.47327 * 186.06485 * 24 23 7 43 43 H 1.08997 * 109.47206 * 306.06325 * 24 23 7 44 44 H 1.09008 * 109.47107 * 66.06460 * 24 23 7 45 45 H 1.08991 * 109.47232 * 59.99846 * 25 23 7 46 46 H 1.09002 * 109.46875 * 180.02562 * 25 23 7 47 47 H 1.08999 * 109.46849 * 299.99435 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6888 -0.0006 5 6 4.7372 1.6236 -0.0002 6 7 5.1216 1.9265 1.3849 7 6 6.3328 2.7567 1.4255 8 1 6.9845 2.4895 0.5937 9 6 7.0687 2.5210 2.7460 10 7 7.3359 1.0895 2.9073 11 6 7.9785 0.6435 4.0048 12 8 8.3400 1.4276 4.8566 13 6 8.2479 -0.8296 4.1737 14 16 9.1185 -1.1086 5.7358 15 6 9.3002 -2.8602 5.6763 16 1 8.9163 -3.4145 4.8326 17 6 9.9375 -3.5274 6.7132 18 7 10.4057 -2.8518 7.7412 19 14 10.1307 -5.3844 6.6497 20 1 10.9151 -5.7595 5.4460 21 1 10.8400 -5.8502 7.8684 22 1 8.7899 -6.0196 6.5847 23 6 5.9437 4.2323 1.3149 24 6 5.0799 4.6233 2.5156 25 6 7.2085 5.0931 1.2946 26 7 3.6194 -0.6168 -0.0065 27 7 2.2964 -1.0881 -0.0005 28 1 2.0093 -2.0146 -0.0006 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3633 0.8898 0.5142 32 1 4.4700 2.5474 -0.5135 33 1 5.5742 1.1513 -0.5145 34 1 5.2456 1.0797 1.9192 35 1 6.4514 2.8708 3.5734 36 1 8.0114 3.0680 2.7393 37 1 7.0464 0.4624 2.2263 38 1 7.3030 -1.3730 4.1827 39 1 8.8628 -1.1837 3.3464 40 1 10.8508 -3.3181 8.4661 41 1 5.3810 4.3917 0.3952 42 1 4.7138 5.6415 2.3837 43 1 4.2340 3.9402 2.5925 44 1 5.6765 4.5668 3.4262 45 1 7.8238 4.8145 0.4393 46 1 6.9312 6.1443 1.2163 47 1 7.7712 4.9337 2.2144 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568445045.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:27 Heat of formation + Delta-G solvation = 11.280404 kcal Electronic energy + Delta-G solvation = -26919.918312 eV Core-core repulsion = 23071.231825 eV Total energy + Delta-G solvation = -3848.686487 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.14728 -40.91475 -39.21125 -35.58635 -35.26458 -34.59882 -33.37586 -33.30941 -31.42048 -29.42772 -28.56285 -27.94881 -27.66985 -26.36620 -24.31418 -22.38737 -21.88809 -21.45933 -20.27413 -19.68923 -18.93883 -17.92157 -17.71086 -17.12396 -16.89424 -16.65548 -16.33917 -16.13345 -15.85727 -15.59264 -15.15101 -14.84056 -14.64706 -14.43293 -14.36432 -14.11006 -13.73981 -13.65021 -13.53875 -13.46847 -13.18861 -13.06711 -12.88666 -12.76103 -12.70806 -12.64176 -12.59311 -11.85648 -11.76294 -11.71896 -11.35650 -11.14556 -11.13403 -11.06195 -10.98172 -10.54092 -10.30615 -10.16090 -9.48932 -8.68470 -8.35923 -6.14304 0.55220 1.24318 1.42364 1.44511 1.54508 1.56806 1.69617 1.76543 2.21176 2.26534 2.93055 2.97904 3.20178 3.30031 3.57400 3.62153 3.89585 3.92122 4.05483 4.13050 4.24832 4.37523 4.39590 4.41736 4.46541 4.48687 4.67605 4.70354 4.75244 4.79898 4.91005 4.95448 5.05992 5.14361 5.19992 5.22514 5.27980 5.35752 5.38004 5.39773 5.54839 5.60227 5.89292 6.14022 6.18007 6.20706 6.37064 7.04963 7.08482 7.16708 8.73102 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009033 B = 0.002630 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3099.130252 B =10645.589364 C =13227.850191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.283 3.717 3 N -0.559 5.559 4 C 0.221 3.779 5 C 0.156 3.844 6 N -0.679 5.679 7 C 0.094 3.906 8 H 0.073 0.927 9 C 0.116 3.884 10 N -0.716 5.716 11 C 0.536 3.464 12 O -0.560 6.560 13 C -0.131 4.131 14 S -0.146 6.146 15 C -0.549 4.549 16 H 0.081 0.919 17 C 0.014 3.986 18 N -0.911 5.911 19 Si 0.998 3.002 20 H -0.262 1.262 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.073 4.073 24 C -0.141 4.141 25 C -0.153 4.153 26 N -0.341 5.341 27 N -0.476 5.476 28 H 0.454 0.546 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.339 0.661 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.408 0.592 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.272 0.728 41 H 0.086 0.914 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.040 0.960 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.312 8.693 -23.026 31.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.005 3.995 3 N -0.289 5.289 4 C -0.062 4.062 5 C 0.026 3.974 6 N -0.313 5.313 7 C -0.015 4.015 8 H 0.091 0.909 9 C -0.008 4.008 10 N -0.371 5.371 11 C 0.322 3.678 12 O -0.438 6.438 13 C -0.282 4.282 14 S 0.081 5.919 15 C -0.696 4.696 16 H 0.099 0.901 17 C -0.191 4.191 18 N -0.547 5.547 19 Si 0.820 3.180 20 H -0.186 1.186 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.092 4.092 24 C -0.199 4.199 25 C -0.210 4.210 26 N -0.172 5.172 27 N -0.196 5.196 28 H 0.302 0.698 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.117 0.883 32 H 0.128 0.872 33 H 0.086 0.914 34 H 0.159 0.841 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.245 0.755 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.081 0.919 41 H 0.104 0.896 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -19.483 10.519 -21.423 30.809 hybrid contribution 0.137 -3.447 -0.960 3.580 sum -19.346 7.072 -22.383 30.418 Atomic orbital electron populations 1.20627 0.80408 1.06345 1.06043 1.25260 0.98279 0.82120 0.93799 1.70369 1.01669 1.30799 1.26081 1.24365 0.94079 0.89961 0.97781 1.20253 0.90125 0.96360 0.90705 1.60425 1.36086 1.23270 1.11529 1.21807 0.89050 0.95194 0.95476 0.90938 1.21757 1.00221 0.80307 0.98512 1.45806 1.59462 1.09615 1.22208 1.20005 0.76848 0.89544 0.81399 1.90696 1.52081 1.58003 1.43046 1.23372 1.05242 0.95807 1.03757 1.85549 1.74044 1.09447 1.22891 1.23167 1.44375 0.92087 1.09998 0.90058 1.26132 0.93969 1.05153 0.93864 1.70174 1.36817 1.38491 1.09203 0.85007 0.78972 0.75878 0.78155 1.18650 1.20260 1.18711 1.20997 0.96821 0.91492 0.99922 1.21768 0.99891 1.01084 0.97114 1.21934 0.96953 1.00172 1.01970 1.77930 0.98847 1.12723 1.27706 1.47951 1.03409 1.11046 1.57233 0.69808 0.87117 0.87382 0.88280 0.87233 0.91421 0.84084 0.91594 0.90745 0.75534 0.87610 0.87297 0.91937 0.89565 0.92443 0.92393 0.94054 0.91734 0.91516 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.51 71.24 0.75 0.41 16 2 C 0.28 4.18 8.24 138.23 1.14 5.32 16 3 N -0.56 -11.77 11.19 -179.74 -2.01 -13.78 16 4 C 0.22 4.67 7.61 138.63 1.05 5.73 16 5 C 0.16 2.58 6.16 85.56 0.53 3.11 16 6 N -0.68 -12.25 5.56 -495.58 -2.76 -15.01 16 7 C 0.09 1.56 2.00 44.91 0.09 1.65 16 8 H 0.07 1.00 7.71 -2.39 -0.02 0.98 16 9 C 0.12 2.70 4.60 86.38 0.40 3.09 16 10 N -0.72 -18.91 4.98 -463.05 -2.31 -21.21 16 11 C 0.54 20.36 7.85 87.66 0.69 21.05 16 12 O -0.56 -26.48 15.86 -3.04 -0.05 -26.53 16 13 C -0.13 -5.33 6.16 71.24 0.44 -4.89 16 14 S -0.15 -8.27 20.57 -56.49 -1.16 -9.43 16 15 C -0.55 -31.76 9.50 67.95 0.65 -31.12 16 16 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 17 C 0.01 0.79 5.49 84.86 0.47 1.25 16 18 N -0.91 -56.45 13.22 21.65 0.29 -56.17 16 19 Si 1.00 43.97 29.55 68.60 2.03 45.99 16 20 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 21 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 22 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 23 C -0.07 -1.09 2.84 -10.79 -0.03 -1.12 16 24 C -0.14 -2.55 8.53 71.98 0.61 -1.94 16 25 C -0.15 -2.13 8.90 71.98 0.64 -1.49 16 26 N -0.34 -7.36 12.80 -51.34 -0.66 -8.02 16 27 N -0.48 -7.13 7.45 -50.71 -0.38 -7.51 16 28 H 0.45 3.60 8.96 -213.10 -1.91 1.69 16 29 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.11 1.61 7.59 -2.38 -0.02 1.60 16 33 H 0.07 0.96 7.95 -2.39 -0.02 0.94 16 34 H 0.34 6.99 6.65 -89.70 -0.60 6.39 16 35 H 0.07 1.79 6.25 -2.39 -0.01 1.78 16 36 H 0.07 1.83 6.75 -2.39 -0.02 1.82 16 37 H 0.41 8.50 7.39 -92.71 -0.69 7.82 16 38 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 39 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 40 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 41 H 0.09 1.14 7.57 -2.39 -0.02 1.12 16 42 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.06 1.21 7.51 -2.39 -0.02 1.20 16 44 H 0.04 0.85 6.62 -2.38 -0.02 0.83 16 45 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 46 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.05 0.81 6.60 -2.39 -0.02 0.79 16 Total: -1.00 -83.37 399.69 -1.76 -85.14 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: -2.17 Total: 25.48 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 7.42 Total: 1.05 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -7.82 Total: -121.69 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.05 Total: -26.53 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: -8.27 SS G_CDS: -1.16 Total: -9.43 kcal Total: -83.37 -1.76 -85.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568445045.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.416 kcal (2) G-P(sol) polarization free energy of solvation -83.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds