Wall clock time and date at job start Sat Apr 11 2020 06:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 120.00053 * 2 1 4 4 H 1.48490 * 109.47297 * 240.00132 * 3 2 1 5 5 H 1.48500 * 109.47126 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46976 * 119.99792 * 3 2 1 7 7 C 1.38947 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99832 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00350 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00135 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00026 * 0.02562 * 10 9 7 12 12 C 1.50693 * 120.00011 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.47360 * 180.02562 * 12 10 9 14 14 C 1.48540 * 110.99904 * 287.39678 * 13 12 10 15 15 C 1.54938 * 103.22467 * 200.27839 * 14 13 12 16 16 C 1.54595 * 102.92433 * 37.41542 * 15 14 13 17 17 O 1.42893 * 110.39496 * 96.99824 * 16 15 14 18 18 C 1.53000 * 110.30625 * 219.12821 * 16 15 14 19 19 N 1.46505 * 109.46820 * 300.71441 * 18 16 15 20 20 C 1.34776 * 119.99639 * 180.02562 * 19 18 16 21 21 O 1.21280 * 120.00056 * 359.97438 * 20 19 18 22 22 C 1.50700 * 119.99982 * 179.97438 * 20 19 18 23 23 H 1.08998 * 110.27162 * 54.36090 * 22 20 19 24 24 C 1.54947 * 110.39504 * 292.21802 * 22 20 19 25 25 C 1.55305 * 100.94425 * 204.59556 * 24 22 20 26 26 C 1.54387 * 102.24962 * 34.12994 * 25 24 22 27 27 O 1.43236 * 107.59079 * 338.64624 * 26 25 24 28 28 C 1.47898 * 111.00449 * 170.00126 * 13 12 10 29 29 H 0.97003 * 120.00392 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00071 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47764 * 60.00457 * 12 10 9 32 32 H 1.08999 * 109.47560 * 299.99990 * 12 10 9 33 33 H 1.09007 * 110.66071 * 318.71177 * 14 13 12 34 34 H 1.09001 * 110.66688 * 81.84265 * 14 13 12 35 35 H 1.08997 * 110.72122 * 279.05270 * 15 14 13 36 36 H 1.09004 * 110.71869 * 155.77392 * 15 14 13 37 37 H 0.96701 * 113.99932 * 62.84568 * 17 16 15 38 38 H 1.08995 * 109.47368 * 180.71329 * 18 16 15 39 39 H 1.09003 * 109.47372 * 60.71166 * 18 16 15 40 40 H 0.96995 * 120.00193 * 0.02562 * 19 18 16 41 41 H 1.09002 * 111.12827 * 86.67222 * 24 22 20 42 42 H 1.09008 * 111.12113 * 322.51190 * 24 22 20 43 43 H 1.08998 * 110.84418 * 275.94481 * 25 24 22 44 44 H 1.09003 * 110.84733 * 152.31891 * 25 24 22 45 45 H 1.09001 * 109.82619 * 98.16119 * 26 25 24 46 46 H 1.09004 * 109.82781 * 219.03947 * 26 25 24 47 47 H 1.09004 * 109.91794 * 26.48547 * 28 13 12 48 48 H 1.09007 * 110.07859 * 265.29203 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2124 5 1 1.2832 2.7464 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2438 -4.8629 0.0000 13 7 2.1983 -5.9795 0.0007 14 6 2.8604 -6.1147 -1.3221 15 6 3.3820 -7.5736 -1.3100 16 6 2.2559 -8.3373 -0.5761 17 8 1.3725 -8.9483 -1.5186 18 6 2.8514 -9.3950 0.3554 19 7 3.6563 -10.3369 -0.4266 20 6 4.2812 -11.3609 0.1876 21 8 4.1775 -11.5025 1.3877 22 6 5.1087 -12.3301 -0.6167 23 1 5.8563 -11.7939 -1.2011 24 6 4.2007 -13.1721 -1.5480 25 6 5.0769 -14.4388 -1.7476 26 6 5.7810 -14.5689 -0.3798 27 8 5.7433 -13.2833 0.2505 28 6 1.5091 -7.2660 0.2399 29 1 -0.4851 0.8400 0.0004 30 1 0.3534 -2.3907 -0.0002 31 1 0.6175 -4.9206 -0.8903 32 1 0.6167 -4.9209 0.8897 33 1 2.1415 -5.9698 -2.1286 34 1 3.6879 -5.4110 -1.4118 35 1 4.3190 -7.6435 -0.7576 36 1 3.5033 -7.9482 -2.3264 37 1 1.7934 -9.6170 -2.0760 38 1 2.0464 -9.9332 0.8557 39 1 3.4818 -8.9096 1.1004 40 1 3.7395 -10.2234 -1.3863 41 1 4.0274 -12.6610 -2.4950 42 1 3.2583 -13.4195 -1.0590 43 1 5.8039 -14.2857 -2.5451 44 1 4.4563 -15.3120 -1.9491 45 1 5.2575 -15.2990 0.2375 46 1 6.8153 -14.8811 -0.5246 47 1 0.4735 -7.2001 -0.0937 48 1 1.5421 -7.5168 1.3002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569741465.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:49 Heat of formation + Delta-G solvation = -185.028793 kcal Electronic energy + Delta-G solvation = -29807.759574 eV Core-core repulsion = 25475.514859 eV Total energy + Delta-G solvation = -4332.244715 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.58324 -40.87014 -39.89529 -39.21243 -37.13966 -35.86504 -35.44673 -33.33675 -33.18372 -32.43378 -31.14320 -30.11791 -28.55197 -26.73571 -25.55868 -24.20304 -22.79758 -22.60081 -21.53222 -21.28266 -21.02549 -19.89346 -18.99501 -18.26908 -17.76555 -17.47789 -16.97966 -16.80848 -16.62520 -16.25132 -16.20886 -16.10792 -15.92353 -15.64474 -15.25690 -14.87260 -14.71751 -14.40931 -14.40512 -14.16679 -13.77145 -13.69410 -13.44481 -13.27580 -13.01023 -12.95098 -12.72526 -12.69853 -12.43836 -12.39655 -12.34404 -12.27317 -12.11978 -11.86558 -11.82683 -11.48210 -11.10881 -11.01293 -10.47602 -10.32104 -10.25429 -10.00513 -9.38017 -8.45778 -5.94598 1.39899 1.41642 1.47392 1.52584 1.79905 2.05880 2.28148 2.67000 2.95257 3.16440 3.20926 3.33549 3.38832 3.45078 3.56609 3.63652 3.78203 3.93094 4.12070 4.15286 4.22495 4.25336 4.27997 4.36076 4.40200 4.50364 4.60468 4.65834 4.68388 4.77710 4.78456 4.80827 4.89872 4.95746 4.98563 5.01989 5.09010 5.20600 5.24692 5.41026 5.80875 5.88798 5.89758 6.06243 6.42403 6.61151 6.74509 7.13413 7.14223 7.56830 8.12774 8.71428 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.032799 B = 0.001759 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.470159 B =15911.592128 C =16145.712924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.333 4.333 8 H 0.079 0.921 9 N -0.575 5.575 10 C 0.443 3.557 11 O -0.615 6.615 12 C 0.049 3.951 13 N -0.512 5.512 14 C 0.040 3.960 15 C -0.137 4.137 16 C 0.133 3.867 17 O -0.554 6.554 18 C 0.111 3.889 19 N -0.706 5.706 20 C 0.509 3.491 21 O -0.576 6.576 22 C 0.061 3.939 23 H 0.124 0.876 24 C -0.139 4.139 25 C -0.145 4.145 26 C 0.036 3.964 27 O -0.397 6.397 28 C 0.045 3.955 29 H 0.277 0.723 30 H 0.396 0.604 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.045 0.955 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.392 0.608 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.417 0.583 41 H 0.129 0.871 42 H 0.073 0.927 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.066 0.934 46 H 0.083 0.917 47 H 0.067 0.933 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.224 -29.301 -10.011 31.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.463 4.463 8 H 0.097 0.903 9 N -0.212 5.212 10 C 0.230 3.770 11 O -0.501 6.501 12 C -0.083 4.083 13 N -0.236 5.236 14 C -0.088 4.088 15 C -0.175 4.175 16 C 0.091 3.909 17 O -0.362 6.362 18 C -0.013 4.013 19 N -0.362 5.362 20 C 0.296 3.704 21 O -0.455 6.455 22 C 0.000 4.000 23 H 0.141 0.859 24 C -0.177 4.177 25 C -0.182 4.182 26 C -0.040 4.040 27 O -0.316 6.316 28 C -0.083 4.083 29 H 0.087 0.913 30 H 0.229 0.771 31 H 0.088 0.912 32 H 0.126 0.874 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.131 0.869 37 H 0.243 0.757 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.255 0.745 41 H 0.147 0.853 42 H 0.092 0.908 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.084 0.916 46 H 0.101 0.899 47 H 0.085 0.915 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.834 -28.695 -8.258 30.249 hybrid contribution -0.416 0.725 -0.874 1.210 sum 4.418 -27.971 -9.133 29.754 Atomic orbital electron populations 1.69670 1.06815 1.29320 1.50349 1.26036 0.96552 1.02386 0.96320 0.84986 0.77745 0.76668 0.78912 1.19631 1.19477 1.19858 1.19622 0.92686 0.83988 1.49983 0.90313 1.41920 1.09280 1.04681 1.65358 1.20685 0.88274 0.85807 0.82216 1.90475 1.15632 1.87845 1.56116 1.21926 0.93779 0.89081 1.03491 1.64486 1.26740 1.01590 1.30828 1.23174 0.98568 0.97888 0.89162 1.23211 0.98263 0.93518 1.02528 1.21894 0.89306 0.90997 0.88704 1.86628 1.39139 1.58695 1.51767 1.21880 0.94908 0.90227 0.94322 1.45611 1.50723 1.27544 1.12272 1.21112 0.79528 0.81777 0.87989 1.90729 1.62967 1.74464 1.17314 1.23079 0.95439 0.91172 0.90304 0.85872 1.23318 0.97998 0.95893 1.00486 1.23148 0.99496 0.98844 0.96754 1.23442 1.01888 0.84268 0.94425 1.88513 1.79534 1.19996 1.43557 1.22843 0.97455 0.87281 1.00764 0.91326 0.77072 0.91182 0.87392 0.93697 0.91856 0.89999 0.86899 0.75741 0.90943 0.91576 0.74522 0.85288 0.90785 0.88083 0.88077 0.91574 0.89869 0.91451 0.88562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.04 13.05 21.66 0.28 -49.76 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 3 Si 0.99 43.26 29.55 68.60 2.03 45.28 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.33 -19.11 9.68 84.04 0.81 -18.30 16 8 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 9 N -0.57 -29.91 5.29 -306.99 -1.62 -31.53 16 10 C 0.44 21.43 7.61 87.66 0.67 22.09 16 11 O -0.61 -34.33 14.64 -3.07 -0.04 -34.38 16 12 C 0.05 1.73 5.19 85.55 0.44 2.18 16 13 N -0.51 -16.56 4.91 -887.54 -4.35 -20.92 16 14 C 0.04 1.18 5.93 86.65 0.51 1.69 16 15 C -0.14 -2.58 5.64 31.80 0.18 -2.40 16 16 C 0.13 2.38 1.05 -9.92 -0.01 2.37 16 17 O -0.55 -8.18 12.95 -148.98 -1.93 -10.11 16 18 C 0.11 2.04 4.50 86.38 0.39 2.43 16 19 N -0.71 -9.21 5.11 -463.05 -2.37 -11.57 16 20 C 0.51 10.09 7.18 87.66 0.63 10.72 16 21 O -0.58 -18.41 16.55 15.45 0.26 -18.15 16 22 C 0.06 0.80 3.86 30.51 0.12 0.91 16 23 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 24 C -0.14 -0.77 6.56 32.05 0.21 -0.56 16 25 C -0.15 -0.63 7.02 31.86 0.22 -0.40 16 26 C 0.04 0.41 7.79 72.45 0.56 0.97 16 27 O -0.40 -8.11 10.61 -130.50 -1.38 -9.50 16 28 C 0.04 1.08 6.14 86.45 0.53 1.61 16 29 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 30 H 0.40 19.57 7.90 -92.71 -0.73 18.84 16 31 H 0.07 2.24 7.83 -2.39 -0.02 2.22 16 32 H 0.11 3.42 8.08 -2.39 -0.02 3.40 16 33 H 0.04 1.29 7.81 -2.38 -0.02 1.27 16 34 H 0.06 2.34 7.10 -2.39 -0.02 2.33 16 35 H 0.08 1.66 7.86 -2.39 -0.02 1.64 16 36 H 0.11 1.28 8.08 -2.38 -0.02 1.26 16 37 H 0.39 2.06 8.14 -74.06 -0.60 1.46 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.42 1.96 7.33 -92.71 -0.68 1.28 16 41 H 0.13 -0.21 8.14 -2.39 -0.02 -0.23 16 42 H 0.07 0.61 8.05 -2.38 -0.02 0.59 16 43 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 44 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 45 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 47 H 0.07 1.58 7.59 -2.38 -0.02 1.57 16 48 H 0.10 2.24 7.68 -2.38 -0.02 2.22 16 Total: -1.00 -83.92 391.71 -4.40 -88.32 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: -1.01 Total: 29.24 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: 5.74 Total: 23.07 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -8.06 Total: -113.78 kcal Atomic # 8 Polarization: -69.03 SS G_CDS: -3.10 Total: -72.13 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -83.92 -4.40 -88.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569741465.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.707 kcal (2) G-P(sol) polarization free energy of solvation -83.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds