Wall clock time and date at job start Sat Apr 11 2020 06:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86794 * 120.00275 * 2 1 4 4 H 1.48496 * 109.47338 * 270.00657 * 3 2 1 5 5 H 1.48502 * 109.46925 * 30.00590 * 3 2 1 6 6 H 1.48504 * 109.47287 * 150.00091 * 3 2 1 7 7 C 1.38953 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99709 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99937 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99717 * 180.02562 * 9 7 2 11 11 O 1.21285 * 120.00330 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99787 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.46786 * 180.02562 * 12 10 9 14 14 C 1.47969 * 110.99654 * 170.00180 * 13 12 10 15 15 C 1.53931 * 86.17877 * 137.57972 * 14 13 12 16 16 C 1.53000 * 113.73208 * 221.81131 * 15 14 13 17 17 C 1.52997 * 109.47381 * 171.94415 * 16 15 14 18 18 O 1.42900 * 109.47342 * 175.17433 * 17 16 15 19 19 N 1.46502 * 113.73669 * 90.63624 * 15 14 13 20 20 C 1.34783 * 119.99509 * 64.88998 * 19 15 14 21 21 O 1.21277 * 120.00378 * 354.99589 * 20 19 15 22 22 C 1.50703 * 119.99466 * 174.72154 * 20 19 15 23 23 H 1.08997 * 109.82511 * 55.84383 * 22 20 19 24 24 C 1.54380 * 109.83052 * 294.86284 * 22 20 19 25 25 C 1.55312 * 102.25136 * 219.13328 * 24 22 20 26 26 C 1.54945 * 100.94189 * 34.13008 * 25 24 22 27 27 O 1.43239 * 109.82835 * 176.72739 * 22 20 19 28 28 C 1.47961 * 110.99982 * 269.35652 * 13 12 10 29 29 H 0.97004 * 119.99672 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99897 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.47404 * 59.99578 * 12 10 9 32 32 H 1.08997 * 109.47128 * 299.99965 * 12 10 9 33 33 H 1.08996 * 113.76110 * 23.25777 * 14 13 12 34 34 H 1.09004 * 113.75267 * 251.89782 * 14 13 12 35 35 H 1.09000 * 109.47203 * 291.94429 * 16 15 14 36 36 H 1.08998 * 109.47027 * 51.94542 * 16 15 14 37 37 H 1.09001 * 109.47347 * 295.17931 * 17 16 15 38 38 H 1.09007 * 109.46973 * 55.17902 * 17 16 15 39 39 H 0.96697 * 113.99886 * 179.97438 * 18 17 16 40 40 H 0.96993 * 120.00193 * 244.89131 * 19 15 14 41 41 H 1.09002 * 110.84643 * 337.31863 * 24 22 20 42 42 H 1.08996 * 110.84688 * 100.94070 * 24 22 20 43 43 H 1.08999 * 111.12006 * 276.21500 * 25 24 22 44 44 H 1.08999 * 111.16200 * 152.06580 * 25 24 22 45 45 H 1.09004 * 110.31075 * 204.63936 * 26 25 24 46 46 H 1.09002 * 110.30853 * 82.47095 * 26 25 24 47 47 H 1.08989 * 113.76243 * 108.09992 * 28 13 12 48 48 H 1.09005 * 113.75660 * 336.73495 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4457 2.6526 0.7002 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2100 -3.5580 -0.0001 12 6 1.2436 -4.8630 -0.0011 13 7 2.1982 -5.9795 -0.0004 14 6 1.5085 -7.2666 0.2389 15 6 2.4124 -7.8388 -0.8679 16 6 1.6857 -8.7789 -1.8317 17 6 2.6120 -9.1294 -2.9979 18 8 1.9756 -10.0941 -3.8384 19 7 3.6737 -8.3942 -0.3708 20 6 3.6632 -9.4758 0.4333 21 8 2.6089 -9.9346 0.8189 22 6 4.9615 -10.1188 0.8481 23 1 5.6044 -9.3792 1.3254 24 6 5.6706 -10.7121 -0.3882 25 6 6.2495 -12.0408 0.1699 26 6 5.1501 -12.4361 1.1877 27 8 4.7020 -11.1955 1.7565 28 6 2.5320 -6.3926 -1.3814 29 1 -0.4850 0.8401 0.0004 30 1 0.3532 -2.3906 -0.0005 31 1 0.6172 -4.9205 -0.8913 32 1 0.6166 -4.9209 0.8886 33 1 0.4502 -7.2528 -0.0216 34 1 1.6995 -7.6904 1.2249 35 1 1.4028 -9.6908 -1.3057 36 1 0.7910 -8.2872 -2.2135 37 1 2.8262 -8.2298 -3.5748 38 1 3.5432 -9.5430 -2.6106 39 1 2.5067 -10.3631 -4.6004 40 1 4.5162 -7.9835 -0.6204 41 1 4.9569 -10.9060 -1.1889 42 1 6.4695 -10.0541 -0.7301 43 1 7.2046 -11.8745 0.6681 44 1 6.3445 -12.7896 -0.6164 45 1 5.5660 -13.0795 1.9631 46 1 4.3270 -12.9384 0.6794 47 1 3.5406 -6.1182 -1.6902 48 1 1.7730 -6.1233 -2.1159 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570755259.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:55 Heat of formation + Delta-G solvation = -124.172842 kcal Electronic energy + Delta-G solvation = -30630.854085 eV Core-core repulsion = 26301.248282 eV Total energy + Delta-G solvation = -4329.605803 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.17398 -39.98318 -38.27488 -37.59602 -37.03106 -34.33499 -33.80826 -32.60110 -31.74893 -31.19937 -29.84959 -28.91296 -26.26776 -25.46453 -24.20793 -23.73353 -22.17686 -21.81217 -20.72584 -19.44759 -19.15202 -17.95390 -17.87012 -17.60958 -16.99738 -16.26063 -15.97742 -15.86901 -15.62931 -15.25319 -15.01823 -14.69302 -14.52311 -14.38893 -14.14753 -13.85037 -13.68450 -13.46808 -13.17909 -13.00425 -12.50468 -12.39136 -12.25256 -12.12016 -11.89501 -11.77501 -11.68793 -11.56443 -11.44467 -11.25213 -11.14838 -10.91058 -10.67398 -10.42466 -10.39229 -10.20971 -10.17975 -9.49210 -9.41416 -9.16332 -8.72104 -8.16309 -7.95029 -6.40620 -3.81387 2.47563 2.75466 3.17762 3.26304 3.32196 3.56486 3.77213 3.90795 3.95878 4.00129 4.21203 4.22393 4.34204 4.41061 4.69015 4.73521 4.76857 4.93366 4.97394 4.99896 5.03236 5.16294 5.21942 5.24268 5.29751 5.36505 5.37790 5.40684 5.48134 5.53334 5.62237 5.63483 5.70879 5.76633 5.85411 5.92036 5.99934 6.27605 6.45977 6.55060 6.57131 7.12482 7.35105 7.38536 7.55806 8.07045 8.13256 8.63317 9.19413 9.56108 10.08306 10.77275 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016897 B = 0.002325 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.706305 B =12041.859571 C =12793.346367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.298 4.298 8 H 0.102 0.898 9 N -0.567 5.567 10 C 0.447 3.553 11 O -0.577 6.577 12 C 0.008 3.992 13 N -0.444 5.444 14 C 0.005 3.995 15 C 0.152 3.848 16 C -0.120 4.120 17 C 0.080 3.920 18 O -0.574 6.574 19 N -0.698 5.698 20 C 0.505 3.495 21 O -0.517 6.517 22 C 0.065 3.935 23 H 0.109 0.891 24 C -0.146 4.146 25 C -0.155 4.155 26 C 0.047 3.953 27 O -0.351 6.351 28 C 0.013 3.987 29 H 0.271 0.729 30 H 0.391 0.609 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.043 0.957 39 H 0.377 0.623 40 H 0.405 0.595 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.063 0.937 47 H 0.095 0.905 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.606 -23.666 -5.826 25.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.120 0.880 9 N -0.204 5.204 10 C 0.232 3.768 11 O -0.460 6.460 12 C -0.124 4.124 13 N -0.166 5.166 14 C -0.125 4.125 15 C 0.064 3.936 16 C -0.159 4.159 17 C 0.003 3.997 18 O -0.380 6.380 19 N -0.352 5.352 20 C 0.290 3.710 21 O -0.391 6.391 22 C 0.003 3.997 23 H 0.126 0.874 24 C -0.183 4.183 25 C -0.192 4.192 26 C -0.029 4.029 27 O -0.268 6.268 28 C -0.116 4.116 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.224 0.776 40 H 0.240 0.760 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.108 0.892 46 H 0.081 0.919 47 H 0.114 0.886 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.461 -23.519 -4.417 25.382 hybrid contribution -0.055 1.014 -1.220 1.587 sum 8.406 -22.505 -5.637 24.676 Atomic orbital electron populations 1.69615 1.05921 1.28102 1.50775 1.25258 0.95638 0.99691 0.97449 0.85863 0.79248 0.80880 0.78326 1.20461 1.20933 1.19439 1.19679 0.93304 0.82237 1.47507 0.88000 1.41884 1.09162 1.04605 1.64785 1.19667 0.88367 0.84368 0.84351 1.90504 1.13656 1.87002 1.54854 1.22503 0.94776 0.92991 1.02115 1.68430 1.30547 1.00488 1.17126 1.24323 0.96927 0.90557 1.00650 1.21639 0.85465 0.92157 0.94301 1.21771 0.98432 1.01054 0.94641 1.22098 0.95111 0.91058 0.91462 1.86492 1.47751 1.62300 1.41426 1.45523 1.08652 1.30328 1.50718 1.20915 0.91664 0.80250 0.78139 1.90706 1.32467 1.62782 1.53173 1.22651 0.93507 0.91781 0.91712 0.87379 1.23122 1.00549 0.97582 0.97094 1.23282 0.99488 0.97060 0.99402 1.23475 0.95774 0.87149 0.96518 1.88546 1.83668 1.14875 1.39741 1.24335 1.03762 0.90822 0.92713 0.91907 0.77541 0.92294 0.89299 0.90535 0.88385 0.89647 0.90071 0.93428 0.93853 0.77621 0.76013 0.90029 0.88827 0.89867 0.89527 0.89207 0.91918 0.88629 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.70 13.05 55.50 0.72 -23.97 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.12 29.55 -169.99 -5.02 16.09 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 9 N -0.57 -14.46 5.29 -10.96 -0.06 -14.52 16 10 C 0.45 10.62 7.83 -10.98 -0.09 10.53 16 11 O -0.58 -15.66 16.01 5.55 0.09 -15.57 16 12 C 0.01 0.15 5.28 -4.97 -0.03 0.12 16 13 N -0.44 -7.28 5.65 -239.56 -1.35 -8.64 16 14 C 0.01 0.07 6.80 -2.76 -0.02 0.05 16 15 C 0.15 1.80 0.61 -133.52 -0.08 1.71 16 16 C -0.12 -1.33 4.90 -26.73 -0.13 -1.46 16 17 C 0.08 0.73 6.86 37.16 0.26 0.99 16 18 O -0.57 -5.54 13.66 -35.23 -0.48 -6.02 16 19 N -0.70 -7.42 4.46 -48.69 -0.22 -7.63 16 20 C 0.51 6.17 6.60 -10.98 -0.07 6.10 16 21 O -0.52 -8.38 14.48 -14.09 -0.20 -8.59 16 22 C 0.06 0.62 3.95 -27.16 -0.11 0.51 16 23 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 24 C -0.15 -0.89 6.52 -24.78 -0.16 -1.05 16 25 C -0.15 -0.83 7.16 -24.48 -0.18 -1.01 16 26 C 0.05 0.38 7.78 38.18 0.30 0.67 16 27 O -0.35 -4.15 10.56 -54.88 -0.58 -4.73 16 28 C 0.01 0.17 7.11 -2.77 -0.02 0.15 16 29 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 31 H 0.06 0.92 7.38 -51.93 -0.38 0.54 16 32 H 0.09 1.49 8.08 -51.93 -0.42 1.07 16 33 H 0.08 0.97 7.88 -51.93 -0.41 0.56 16 34 H 0.10 1.55 7.23 -51.93 -0.38 1.18 16 35 H 0.08 1.14 7.21 -51.93 -0.37 0.77 16 36 H 0.08 0.88 8.11 -51.93 -0.42 0.46 16 37 H 0.05 0.39 8.09 -51.93 -0.42 -0.03 16 38 H 0.04 0.35 7.54 -51.92 -0.39 -0.04 16 39 H 0.38 1.84 9.12 45.56 0.42 2.25 16 40 H 0.40 3.45 8.68 -40.82 -0.35 3.10 16 41 H 0.08 0.53 7.84 -51.93 -0.41 0.12 16 42 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.10 1.27 8.09 -51.93 -0.42 0.85 16 48 H 0.08 1.01 7.41 -51.93 -0.39 0.63 16 LS Contribution 395.47 15.07 5.96 5.96 Total: -1.00 -36.82 395.47 -8.43 -45.24 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -6.72 Total: 13.06 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: -0.57 Total: 9.32 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.90 Total: -54.77 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -1.18 Total: -34.90 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.82 -8.43 -45.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570755259.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.929 kcal (2) G-P(sol) polarization free energy of solvation -36.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds