Wall clock time and date at job start Sat Apr 11 2020 06:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86794 * 120.00275 * 2 1 4 4 H 1.48496 * 109.47338 * 270.00657 * 3 2 1 5 5 H 1.48502 * 109.46925 * 30.00590 * 3 2 1 6 6 H 1.48504 * 109.47287 * 150.00091 * 3 2 1 7 7 C 1.38953 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99709 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99937 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99717 * 180.02562 * 9 7 2 11 11 O 1.21285 * 120.00330 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99787 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.46786 * 180.02562 * 12 10 9 14 14 C 1.47969 * 110.99654 * 170.00180 * 13 12 10 15 15 C 1.53931 * 86.17877 * 137.57972 * 14 13 12 16 16 C 1.53000 * 113.73208 * 221.81131 * 15 14 13 17 17 C 1.52997 * 109.47381 * 171.94415 * 16 15 14 18 18 O 1.42900 * 109.47342 * 175.17433 * 17 16 15 19 19 N 1.46502 * 113.73669 * 90.63624 * 15 14 13 20 20 C 1.34783 * 119.99509 * 64.88998 * 19 15 14 21 21 O 1.21277 * 120.00378 * 354.99589 * 20 19 15 22 22 C 1.50703 * 119.99466 * 174.72154 * 20 19 15 23 23 H 1.08997 * 109.82511 * 55.84383 * 22 20 19 24 24 C 1.54380 * 109.83052 * 294.86284 * 22 20 19 25 25 C 1.55312 * 102.25136 * 219.13328 * 24 22 20 26 26 C 1.54945 * 100.94189 * 34.13008 * 25 24 22 27 27 O 1.43239 * 109.82835 * 176.72739 * 22 20 19 28 28 C 1.47961 * 110.99982 * 269.35652 * 13 12 10 29 29 H 0.97004 * 119.99672 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99897 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.47404 * 59.99578 * 12 10 9 32 32 H 1.08997 * 109.47128 * 299.99965 * 12 10 9 33 33 H 1.08996 * 113.76110 * 23.25777 * 14 13 12 34 34 H 1.09004 * 113.75267 * 251.89782 * 14 13 12 35 35 H 1.09000 * 109.47203 * 291.94429 * 16 15 14 36 36 H 1.08998 * 109.47027 * 51.94542 * 16 15 14 37 37 H 1.09001 * 109.47347 * 295.17931 * 17 16 15 38 38 H 1.09007 * 109.46973 * 55.17902 * 17 16 15 39 39 H 0.96697 * 113.99886 * 179.97438 * 18 17 16 40 40 H 0.96993 * 120.00193 * 244.89131 * 19 15 14 41 41 H 1.09002 * 110.84643 * 337.31863 * 24 22 20 42 42 H 1.08996 * 110.84688 * 100.94070 * 24 22 20 43 43 H 1.08999 * 111.12006 * 276.21500 * 25 24 22 44 44 H 1.08999 * 111.16200 * 152.06580 * 25 24 22 45 45 H 1.09004 * 110.31075 * 204.63936 * 26 25 24 46 46 H 1.09002 * 110.30853 * 82.47095 * 26 25 24 47 47 H 1.08989 * 113.76243 * 108.09992 * 28 13 12 48 48 H 1.09005 * 113.75660 * 336.73495 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4457 2.6526 0.7002 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2100 -3.5580 -0.0001 12 6 1.2436 -4.8630 -0.0011 13 7 2.1982 -5.9795 -0.0004 14 6 1.5085 -7.2666 0.2389 15 6 2.4124 -7.8388 -0.8679 16 6 1.6857 -8.7789 -1.8317 17 6 2.6120 -9.1294 -2.9979 18 8 1.9756 -10.0941 -3.8384 19 7 3.6737 -8.3942 -0.3708 20 6 3.6632 -9.4758 0.4333 21 8 2.6089 -9.9346 0.8189 22 6 4.9615 -10.1188 0.8481 23 1 5.6044 -9.3792 1.3254 24 6 5.6706 -10.7121 -0.3882 25 6 6.2495 -12.0408 0.1699 26 6 5.1501 -12.4361 1.1877 27 8 4.7020 -11.1955 1.7565 28 6 2.5320 -6.3926 -1.3814 29 1 -0.4850 0.8401 0.0004 30 1 0.3532 -2.3906 -0.0005 31 1 0.6172 -4.9205 -0.8913 32 1 0.6166 -4.9209 0.8886 33 1 0.4502 -7.2528 -0.0216 34 1 1.6995 -7.6904 1.2249 35 1 1.4028 -9.6908 -1.3057 36 1 0.7910 -8.2872 -2.2135 37 1 2.8262 -8.2298 -3.5748 38 1 3.5432 -9.5430 -2.6106 39 1 2.5067 -10.3631 -4.6004 40 1 4.5162 -7.9835 -0.6204 41 1 4.9569 -10.9060 -1.1889 42 1 6.4695 -10.0541 -0.7301 43 1 7.2046 -11.8745 0.6681 44 1 6.3445 -12.7896 -0.6164 45 1 5.5660 -13.0795 1.9631 46 1 4.3270 -12.9384 0.6794 47 1 3.5406 -6.1182 -1.6902 48 1 1.7730 -6.1233 -2.1159 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570755259.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:54 Heat of formation + Delta-G solvation = -156.763043 kcal Electronic energy + Delta-G solvation = -30632.267302 eV Core-core repulsion = 26301.248282 eV Total energy + Delta-G solvation = -4331.019020 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.19717 -40.88265 -39.82180 -38.81304 -37.80195 -35.96495 -35.26083 -33.37932 -33.19566 -32.56476 -30.60408 -30.15981 -27.36643 -27.13031 -25.41162 -24.62300 -22.90360 -22.67996 -21.63879 -21.00950 -20.35575 -19.87632 -18.72647 -18.39102 -17.80046 -17.75583 -17.02404 -16.79604 -16.70186 -16.46360 -16.24737 -16.19105 -15.64989 -15.59285 -15.28789 -15.11754 -14.63442 -14.53047 -14.36853 -14.09489 -13.77415 -13.53981 -13.38378 -13.10223 -13.02852 -12.90588 -12.75841 -12.70251 -12.42158 -12.29648 -12.26493 -12.18001 -12.10491 -11.93309 -11.61172 -11.48751 -11.21277 -10.87858 -10.40266 -10.29744 -10.15283 -10.00324 -9.65260 -8.45965 -5.94648 1.38051 1.41603 1.54437 1.55949 1.89765 2.06303 2.28217 2.69386 2.92043 3.01197 3.20540 3.27355 3.35579 3.45501 3.64569 3.86449 3.88649 4.10080 4.12892 4.13625 4.18704 4.23511 4.29165 4.36536 4.39807 4.43559 4.48647 4.54592 4.65340 4.72175 4.76093 4.76708 4.78319 4.88903 4.93974 4.96512 5.08733 5.19849 5.32481 5.41370 5.52422 5.82744 5.88891 6.05163 6.53275 6.61075 6.89783 7.13583 7.23033 7.57354 8.13054 8.71551 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016897 B = 0.002325 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.706305 B =12041.859571 C =12793.346367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 0.993 3.007 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.331 4.331 8 H 0.079 0.921 9 N -0.577 5.577 10 C 0.446 3.554 11 O -0.614 6.614 12 C 0.020 3.980 13 N -0.472 5.472 14 C 0.005 3.995 15 C 0.167 3.833 16 C -0.114 4.114 17 C 0.084 3.916 18 O -0.595 6.595 19 N -0.689 5.689 20 C 0.502 3.498 21 O -0.564 6.564 22 C 0.061 3.939 23 H 0.121 0.879 24 C -0.138 4.138 25 C -0.144 4.144 26 C 0.036 3.964 27 O -0.387 6.387 28 C 0.016 3.984 29 H 0.277 0.723 30 H 0.395 0.605 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.398 0.602 40 H 0.416 0.584 41 H 0.078 0.922 42 H 0.122 0.878 43 H 0.096 0.904 44 H 0.105 0.895 45 H 0.102 0.898 46 H 0.052 0.948 47 H 0.096 0.904 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.723 -23.969 -7.319 26.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.215 4.215 3 Si 0.817 3.183 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.460 4.460 8 H 0.097 0.903 9 N -0.215 5.215 10 C 0.233 3.767 11 O -0.500 6.500 12 C -0.112 4.112 13 N -0.195 5.195 14 C -0.124 4.124 15 C 0.079 3.921 16 C -0.153 4.153 17 C 0.006 3.994 18 O -0.403 6.403 19 N -0.343 5.343 20 C 0.289 3.711 21 O -0.442 6.442 22 C 0.000 4.000 23 H 0.138 0.862 24 C -0.176 4.176 25 C -0.181 4.181 26 C -0.040 4.040 27 O -0.306 6.306 28 C -0.113 4.113 29 H 0.086 0.914 30 H 0.229 0.771 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.248 0.752 40 H 0.254 0.746 41 H 0.096 0.904 42 H 0.140 0.860 43 H 0.115 0.885 44 H 0.124 0.876 45 H 0.120 0.880 46 H 0.070 0.930 47 H 0.114 0.886 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.593 -23.834 -5.943 26.370 hybrid contribution -0.414 1.040 -0.729 1.336 sum 9.178 -22.794 -6.672 25.462 Atomic orbital electron populations 1.69680 1.06860 1.29230 1.50556 1.26050 0.96548 1.02446 0.96412 0.84926 0.77844 0.76863 0.78701 1.19441 1.19730 1.19796 1.19647 0.92658 0.83962 1.49750 0.90283 1.41964 1.09279 1.04756 1.65477 1.20661 0.88250 0.85680 0.82108 1.90469 1.15606 1.87863 1.56039 1.22385 0.94574 0.90294 1.03909 1.68381 1.30834 1.00733 1.19518 1.24313 0.98218 0.89476 1.00404 1.21426 0.85484 0.91847 0.93327 1.21673 0.99028 0.99592 0.95035 1.22049 0.94643 0.91772 0.90920 1.86435 1.48918 1.62446 1.42522 1.45472 1.08875 1.29836 1.50113 1.21518 0.92164 0.80017 0.77385 1.90681 1.34327 1.64168 1.54995 1.22840 0.92188 0.91769 0.93215 0.86154 1.23164 1.00862 0.98273 0.95286 1.23282 0.98842 0.96930 0.99081 1.23689 0.96502 0.86112 0.97699 1.88508 1.84275 1.16496 1.41277 1.24394 1.04187 0.91162 0.91536 0.91369 0.77129 0.89558 0.88263 0.89034 0.90621 0.92099 0.89730 0.91979 0.92799 0.75233 0.74596 0.90362 0.85996 0.88542 0.87619 0.87991 0.92956 0.88608 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.06 13.05 21.66 0.28 -49.78 16 2 C -0.02 -0.81 5.50 84.93 0.47 -0.34 16 3 Si 0.99 42.95 29.55 68.60 2.03 44.98 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.33 -18.80 9.68 84.04 0.81 -17.98 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.58 -29.76 5.29 -306.99 -1.62 -31.38 16 10 C 0.45 21.26 7.83 87.66 0.69 21.95 16 11 O -0.61 -33.81 16.01 -3.05 -0.05 -33.86 16 12 C 0.02 0.70 5.28 85.56 0.45 1.15 16 13 N -0.47 -15.18 5.65 -911.84 -5.15 -20.33 16 14 C 0.01 0.15 6.80 86.40 0.59 0.74 16 15 C 0.17 3.80 0.61 5.17 0.00 3.80 16 16 C -0.11 -2.42 4.90 30.59 0.15 -2.27 16 17 C 0.08 1.35 6.86 71.98 0.49 1.85 16 18 O -0.59 -10.32 13.66 -148.98 -2.04 -12.35 16 19 N -0.69 -14.05 4.46 -426.36 -1.90 -15.96 16 20 C 0.50 12.25 6.60 87.66 0.58 12.83 16 21 O -0.56 -18.92 14.48 15.77 0.23 -18.69 16 22 C 0.06 1.12 3.95 30.32 0.12 1.24 16 23 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 24 C -0.14 -1.36 6.52 31.86 0.21 -1.15 16 25 C -0.14 -1.19 7.16 32.05 0.23 -0.97 16 26 C 0.04 0.55 7.78 72.65 0.56 1.11 16 27 O -0.39 -9.21 10.56 -130.19 -1.38 -10.59 16 28 C 0.02 0.40 7.11 86.40 0.61 1.02 16 29 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 30 H 0.40 19.43 7.90 -92.71 -0.73 18.70 16 31 H 0.09 2.53 7.38 -2.39 -0.02 2.52 16 32 H 0.10 3.25 8.08 -2.39 -0.02 3.23 16 33 H 0.09 2.24 7.88 -2.39 -0.02 2.22 16 34 H 0.08 2.46 7.23 -2.38 -0.02 2.45 16 35 H 0.06 1.63 7.21 -2.39 -0.02 1.61 16 36 H 0.08 1.71 8.11 -2.39 -0.02 1.69 16 37 H 0.06 0.84 8.09 -2.39 -0.02 0.82 16 38 H 0.05 0.75 7.54 -2.38 -0.02 0.73 16 39 H 0.40 2.95 9.12 -74.06 -0.68 2.28 16 40 H 0.42 6.47 8.68 -92.71 -0.80 5.66 16 41 H 0.08 0.84 7.84 -2.39 -0.02 0.83 16 42 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.11 0.50 8.14 -2.39 -0.02 0.49 16 45 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.10 2.40 8.09 -2.39 -0.02 2.38 16 48 H 0.10 2.15 7.41 -2.38 -0.02 2.13 16 Total: -1.00 -81.57 395.47 -4.83 -86.40 By element: Atomic # 1 Polarization: 39.79 SS G_CDS: -1.20 Total: 38.59 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: 5.97 Total: 22.97 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -8.39 Total: -117.45 kcal Atomic # 8 Polarization: -72.25 SS G_CDS: -3.23 Total: -75.48 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -81.57 -4.83 -86.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570755259.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.363 kcal (2) G-P(sol) polarization free energy of solvation -81.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds