Wall clock time and date at job start Sat Apr 11 2020 06:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30832 * 125.96108 * 2 1 4 4 C 1.33244 * 109.83031 * 179.97438 * 3 2 1 5 5 C 1.50697 * 125.52726 * 179.73720 * 4 3 2 6 6 H 1.08997 * 109.47450 * 15.00230 * 5 4 3 7 7 C 1.52995 * 109.47020 * 254.99739 * 5 4 3 8 8 N 1.46909 * 109.47171 * 134.99738 * 5 4 3 9 9 C 1.46896 * 111.00232 * 204.99975 * 8 5 4 10 10 H 1.09004 * 109.46732 * 325.00403 * 9 8 5 11 11 C 1.53001 * 109.47114 * 84.99722 * 9 8 5 12 12 C 1.52998 * 109.47231 * 205.00310 * 9 8 5 13 13 N 1.46495 * 109.47069 * 55.00104 * 12 9 8 14 14 C 1.46502 * 120.00436 * 90.00389 * 13 12 9 15 15 C 1.34780 * 119.99629 * 269.99387 * 13 12 9 16 16 O 1.21282 * 120.00309 * 0.02562 * 15 13 12 17 17 C 1.50708 * 119.99986 * 179.97438 * 15 13 12 18 18 S 1.80997 * 109.47079 * 180.02562 * 17 15 13 19 19 C 1.76196 * 99.99764 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00523 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99968 * 179.97438 * 19 18 17 22 22 N 1.31636 * 120.00028 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00227 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46707 * 60.00507 * 23 21 19 25 25 H 1.48496 * 109.47185 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47178 * 300.00445 * 23 21 19 27 27 N 1.30715 * 108.94545 * 359.97438 * 4 3 2 28 28 N 1.34430 * 125.96160 * 179.97438 * 2 1 3 29 29 H 0.96996 * 126.82506 * 0.02562 * 28 2 1 30 30 H 1.08991 * 109.47005 * 89.99821 * 1 2 3 31 31 H 1.09000 * 109.47083 * 209.99974 * 1 2 3 32 32 H 1.09000 * 109.47150 * 329.99689 * 1 2 3 33 33 H 1.08997 * 109.46973 * 60.00406 * 7 5 4 34 34 H 1.09003 * 109.47138 * 180.02562 * 7 5 4 35 35 H 1.09000 * 109.47066 * 299.99839 * 7 5 4 36 36 H 1.00897 * 110.99768 * 328.95450 * 8 5 4 37 37 H 1.09000 * 109.47278 * 300.00200 * 11 9 8 38 38 H 1.08997 * 109.46816 * 60.00048 * 11 9 8 39 39 H 1.09001 * 109.47318 * 180.02562 * 11 9 8 40 40 H 1.09000 * 109.46729 * 175.00068 * 12 9 8 41 41 H 1.09000 * 109.46990 * 294.99934 * 12 9 8 42 42 H 1.09000 * 109.46910 * 89.99386 * 14 13 12 43 43 H 1.08996 * 109.46588 * 209.99847 * 14 13 12 44 44 H 1.08998 * 109.46246 * 329.99395 * 14 13 12 45 45 H 1.08994 * 109.47032 * 300.00981 * 17 15 13 46 46 H 1.08996 * 109.46601 * 60.00750 * 17 15 13 47 47 H 0.97002 * 119.99848 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6888 0.0006 5 6 4.7372 1.6236 -0.0049 6 1 4.4067 2.6288 0.2567 7 6 5.3676 1.6406 -1.3988 8 7 5.7297 1.1639 0.9758 9 6 6.5686 2.2778 1.4377 10 1 6.7331 2.9740 0.6152 11 6 5.8658 3.0031 2.5869 12 6 7.9142 1.7355 1.9237 13 7 8.5329 0.9401 0.8604 14 6 9.4207 1.5818 -0.1124 15 6 8.2856 -0.3822 0.7773 16 8 7.5504 -0.9135 1.5824 17 6 8.9216 -1.2005 -0.3169 18 16 8.3982 -2.9261 -0.1617 19 6 9.2645 -3.6323 -1.5238 20 1 9.8854 -3.0093 -2.1505 21 6 9.1490 -4.9893 -1.7915 22 7 8.3918 -5.7486 -1.0280 23 14 10.0668 -5.7379 -3.2361 24 1 11.5263 -5.5307 -3.0561 25 1 9.7778 -7.1928 -3.3059 26 1 9.6257 -5.0850 -4.4948 27 7 3.6195 -0.6168 0.0015 28 7 2.2964 -1.0881 0.0005 29 1 2.0094 -2.0146 0.0006 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 4.6312 1.9818 -2.1264 34 1 6.2228 2.3165 -1.4027 35 1 5.6982 0.6354 -1.6604 36 1 5.2826 0.7014 1.7531 37 1 4.9072 3.3895 2.2406 38 1 5.7012 2.3069 3.4093 39 1 6.4881 3.8300 2.9294 40 1 8.5689 2.5675 2.1830 41 1 7.7576 1.1090 2.8019 42 1 10.4460 1.5519 0.2565 43 1 9.3609 1.0523 -1.0632 44 1 9.1155 2.6186 -0.2539 45 1 8.6116 -0.8129 -1.2873 46 1 10.0066 -1.1404 -0.2314 47 1 8.3114 -6.6971 -1.2149 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571377930.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:02 Heat of formation + Delta-G solvation = 53.864152 kcal Electronic energy + Delta-G solvation = -28258.361954 eV Core-core repulsion = 24411.522037 eV Total energy + Delta-G solvation = -3846.839917 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.14547 -39.31128 -37.41044 -34.99829 -33.51470 -32.37803 -32.31990 -31.60870 -29.32141 -28.19001 -28.01452 -27.03061 -25.50609 -25.04631 -23.99478 -21.38827 -20.62324 -19.95952 -18.94321 -17.87813 -17.49372 -16.44519 -15.87088 -15.79954 -15.63739 -15.35238 -14.71955 -14.64231 -14.29900 -14.02227 -13.80370 -13.33203 -13.28303 -13.14703 -12.88024 -12.86286 -12.64298 -12.41697 -12.25414 -12.11875 -12.09820 -11.86433 -11.73520 -11.62638 -11.38339 -11.22359 -10.97014 -10.92803 -10.83616 -10.67457 -10.07573 -10.00064 -9.68247 -9.44538 -8.95728 -8.95218 -8.38534 -8.03876 -8.00096 -6.32387 -6.10938 -3.77926 1.63425 2.66184 2.82282 3.18680 3.28980 3.32724 3.37479 3.52940 3.72866 3.85891 4.23762 4.31982 4.53243 4.71224 4.86868 5.02263 5.08139 5.10525 5.15497 5.23467 5.23718 5.34052 5.37442 5.45616 5.47475 5.48758 5.59014 5.59361 5.76951 5.78521 5.85539 5.86735 5.91108 5.98346 6.11976 6.16875 6.25356 6.34346 6.38595 6.47354 6.92910 7.02969 7.18066 7.53077 7.69140 7.92885 8.13046 8.45418 9.01705 9.34191 10.96254 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009206 B = 0.003722 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3040.900829 B = 7520.328998 C = 9714.766530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.270 3.730 3 N -0.542 5.542 4 C 0.213 3.787 5 C 0.186 3.814 6 H 0.064 0.936 7 C -0.134 4.134 8 N -0.652 5.652 9 C 0.067 3.933 10 H 0.078 0.922 11 C -0.182 4.182 12 C 0.132 3.868 13 N -0.615 5.615 14 C 0.085 3.915 15 C 0.546 3.454 16 O -0.503 6.503 17 C -0.146 4.146 18 S -0.056 6.056 19 C -0.533 4.533 20 H 0.069 0.931 21 C 0.074 3.926 22 N -0.869 5.869 23 Si 0.915 3.085 24 H -0.275 1.275 25 H -0.284 1.284 26 H -0.275 1.275 27 N -0.259 5.259 28 N -0.482 5.482 29 H 0.441 0.559 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.350 0.650 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.048 0.952 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.939 19.236 3.074 22.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.008 4.008 3 N -0.272 5.272 4 C -0.071 4.071 5 C 0.074 3.926 6 H 0.082 0.918 7 C -0.192 4.192 8 N -0.285 5.285 9 C -0.044 4.044 10 H 0.096 0.904 11 C -0.241 4.241 12 C 0.008 3.992 13 N -0.351 5.351 14 C -0.059 4.059 15 C 0.334 3.666 16 O -0.375 6.375 17 C -0.297 4.297 18 S 0.171 5.829 19 C -0.681 4.681 20 H 0.087 0.913 21 C -0.135 4.135 22 N -0.505 5.505 23 Si 0.741 3.259 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.200 1.200 27 N -0.087 5.087 28 N -0.200 5.200 29 H 0.287 0.713 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.171 0.829 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.102 0.898 46 H 0.098 0.902 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.063 18.009 3.832 21.480 hybrid contribution 0.442 0.003 -1.460 1.526 sum -10.621 18.012 2.371 21.044 Atomic orbital electron populations 1.20343 0.83926 1.04762 1.04367 1.24326 0.96490 0.83164 0.96856 1.70291 1.01373 1.29692 1.25855 1.24224 0.92732 0.90609 0.99493 1.19673 0.84894 0.92775 0.95259 0.91804 1.21773 0.99977 1.03640 0.93849 1.60498 1.23590 1.26132 1.18298 1.22084 0.94193 0.91801 0.96369 0.90378 1.22477 1.00937 1.01184 0.99540 1.21321 0.91872 0.94863 0.91169 1.47543 1.48673 1.08044 1.30865 1.21666 0.93286 0.97878 0.93098 1.19906 0.80387 0.80889 0.85432 1.90638 1.35142 1.70190 1.41571 1.23514 1.02823 1.03748 0.99642 1.85363 1.63438 0.93643 1.40499 1.22868 1.33259 0.96314 1.15700 0.91263 1.24952 0.95475 0.96054 0.97048 1.70025 1.36839 1.06059 1.37554 0.86292 0.79903 0.77921 0.81776 1.20003 1.20917 1.20049 1.78473 0.95155 1.11893 1.23198 1.48210 1.04681 1.10144 1.57004 0.71332 0.89189 0.89943 0.88647 0.92768 0.91971 0.90983 0.82943 0.92562 0.92184 0.91965 0.90943 0.90071 0.93336 0.91047 0.92017 0.89817 0.90154 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.51 36.01 0.38 -0.07 16 2 C 0.27 3.11 8.24 -155.69 -1.28 1.83 16 3 N -0.54 -7.69 11.19 -8.16 -0.09 -7.78 16 4 C 0.21 3.30 6.64 -156.85 -1.04 2.26 16 5 C 0.19 2.53 2.97 -68.86 -0.20 2.32 16 6 H 0.06 0.79 7.11 -51.93 -0.37 0.42 16 7 C -0.13 -1.78 9.38 37.16 0.35 -1.43 16 8 N -0.65 -9.30 4.31 -100.95 -0.44 -9.73 16 9 C 0.07 0.74 2.70 -67.72 -0.18 0.56 16 10 H 0.08 0.79 7.11 -51.93 -0.37 0.42 16 11 C -0.18 -1.66 9.15 37.16 0.34 -1.32 16 12 C 0.13 1.59 5.20 -4.05 -0.02 1.57 16 13 N -0.62 -8.92 2.78 -181.57 -0.50 -9.43 16 14 C 0.08 0.94 10.24 59.85 0.61 1.55 16 15 C 0.55 10.76 7.03 -10.98 -0.08 10.69 16 16 O -0.50 -11.60 14.59 5.56 0.08 -11.52 16 17 C -0.15 -3.17 4.71 36.01 0.17 -3.00 16 18 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 19 C -0.53 -15.70 9.50 30.94 0.29 -15.40 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.16 5.49 -17.43 -0.10 2.06 16 22 N -0.87 -26.85 13.22 55.49 0.73 -26.12 16 23 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 27 N -0.26 -4.49 12.78 32.42 0.41 -4.07 16 28 N -0.48 -6.23 7.45 32.62 0.24 -5.99 16 29 H 0.44 4.36 8.96 -182.34 -1.63 2.73 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.72 7.43 -51.93 -0.39 0.33 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.35 5.62 8.09 -39.29 -0.32 5.31 16 37 H 0.06 0.52 7.43 -51.93 -0.39 0.13 16 38 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 41 H 0.08 1.14 7.42 -51.93 -0.39 0.76 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.85 6.44 -51.93 -0.33 0.51 16 44 H 0.06 0.52 8.07 -51.93 -0.42 0.10 16 45 H 0.08 1.73 7.40 -51.92 -0.38 1.35 16 46 H 0.08 1.64 8.11 -51.92 -0.42 1.21 16 47 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 402.39 15.07 6.06 6.06 Total: -1.00 -38.24 402.39 -10.24 -48.48 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -8.75 Total: 5.32 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -0.76 Total: 1.61 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: 0.36 Total: -63.12 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.08 Total: -11.52 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -38.24 -10.24 -48.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571377930.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.348 kcal (2) G-P(sol) polarization free energy of solvation -38.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds