Wall clock time and date at job start Sat Apr 11 2020 06:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30829 * 125.96405 * 2 1 4 4 C 1.33242 * 109.83030 * 180.19114 * 3 2 1 5 5 C 1.50698 * 125.52707 * 179.85520 * 4 3 2 6 6 H 1.09000 * 109.47007 * 344.71864 * 5 4 3 7 7 C 1.52999 * 109.47393 * 104.71728 * 5 4 3 8 8 N 1.46906 * 109.47106 * 224.71788 * 5 4 3 9 9 C 1.46901 * 110.99936 * 117.33150 * 8 5 4 10 10 H 1.09007 * 109.46928 * 314.79270 * 9 8 5 11 11 C 1.52999 * 109.47142 * 74.78789 * 9 8 5 12 12 C 1.53000 * 109.47064 * 194.79145 * 9 8 5 13 13 N 1.46499 * 109.46974 * 54.99949 * 12 9 8 14 14 C 1.46500 * 120.00208 * 90.00082 * 13 12 9 15 15 C 1.34776 * 120.00309 * 270.00017 * 13 12 9 16 16 O 1.21290 * 119.99614 * 359.97438 * 15 13 12 17 17 C 1.50698 * 120.00484 * 180.02562 * 15 13 12 18 18 S 1.80995 * 109.47265 * 179.97438 * 17 15 13 19 19 C 1.76198 * 100.00096 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99835 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00025 * 180.02562 * 19 18 17 22 22 N 1.31630 * 120.00191 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99850 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47183 * 60.00252 * 23 21 19 25 25 H 1.48508 * 109.47183 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47391 * 299.99928 * 23 21 19 27 27 N 1.30718 * 108.94534 * 359.59023 * 4 3 2 28 28 N 1.34431 * 125.96042 * 179.75051 * 2 1 3 29 29 H 0.97004 * 126.82037 * 359.93290 * 28 2 1 30 30 H 1.08997 * 109.47517 * 270.27170 * 1 2 3 31 31 H 1.09000 * 109.47170 * 30.27567 * 1 2 3 32 32 H 1.09005 * 109.47052 * 150.26882 * 1 2 3 33 33 H 1.09001 * 109.46963 * 304.81568 * 7 5 4 34 34 H 1.09001 * 109.47048 * 64.80961 * 7 5 4 35 35 H 1.08992 * 109.47514 * 184.80849 * 7 5 4 36 36 H 1.00899 * 111.00031 * 353.38092 * 8 5 4 37 37 H 1.08995 * 109.47480 * 307.53402 * 11 9 8 38 38 H 1.08997 * 109.46950 * 67.54174 * 11 9 8 39 39 H 1.09006 * 109.46908 * 187.53488 * 11 9 8 40 40 H 1.09004 * 109.46861 * 174.99877 * 12 9 8 41 41 H 1.08993 * 109.47127 * 295.00189 * 12 9 8 42 42 H 1.09004 * 109.47441 * 89.99506 * 14 13 12 43 43 H 1.09000 * 109.47570 * 209.99898 * 14 13 12 44 44 H 1.09003 * 109.47048 * 329.99919 * 14 13 12 45 45 H 1.08999 * 109.46999 * 300.00261 * 17 15 13 46 46 H 1.09002 * 109.46739 * 59.99909 * 17 15 13 47 47 H 0.97001 * 120.00116 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5553 0.6887 -0.0042 5 6 4.7372 1.6235 -0.0086 6 1 4.4063 2.6263 -0.2788 7 6 5.3694 1.6531 1.3843 8 7 5.7285 1.1548 -0.9863 9 6 5.9227 2.1442 -2.0547 10 1 4.9526 2.5088 -2.3929 11 6 6.7499 3.3154 -1.5211 12 6 6.6590 1.4916 -3.2264 13 7 5.9266 0.2994 -3.6603 14 6 4.8917 0.4102 -4.6913 15 6 6.2048 -0.8995 -3.1111 16 8 7.0619 -0.9914 -2.2579 17 6 5.4518 -2.1261 -3.5578 18 16 6.0500 -3.5681 -2.6421 19 6 5.0282 -4.8210 -3.3427 20 1 4.3058 -4.5656 -4.1039 21 6 5.1516 -6.1361 -2.9165 22 7 6.0317 -6.4473 -1.9885 23 14 4.0678 -7.4642 -3.6588 24 1 4.3071 -7.5375 -5.1225 25 1 4.3939 -8.7734 -3.0383 26 1 2.6414 -7.1376 -3.4062 27 7 3.6194 -0.6169 0.0019 28 7 2.2964 -1.0881 0.0047 29 1 2.0093 -2.0147 0.0097 30 1 -0.3634 0.0049 1.0276 31 1 -0.3633 0.8875 -0.5181 32 1 -0.3633 -0.8924 -0.5097 33 1 4.6116 1.9183 2.1216 34 1 5.7766 0.6698 1.6195 35 1 6.1702 2.3922 1.4043 36 1 5.4650 0.2584 -1.3672 37 1 6.2941 3.6955 -0.6069 38 1 7.7638 2.9768 -1.3080 39 1 6.7812 4.1084 -2.2684 40 1 6.7247 2.1987 -4.0534 41 1 7.6628 1.2067 -2.9114 42 1 5.3412 0.2686 -5.6742 43 1 4.1311 -0.3529 -4.5263 44 1 4.4327 1.3976 -4.6407 45 1 4.3876 -1.9891 -3.3659 46 1 5.6114 -2.2818 -4.6248 47 1 6.1178 -7.3664 -1.6903 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571377931.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:05 Heat of formation + Delta-G solvation = 54.539737 kcal Electronic energy + Delta-G solvation = -28734.695136 eV Core-core repulsion = 24887.884514 eV Total energy + Delta-G solvation = -3846.810622 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.14836 -39.77771 -37.30334 -35.26982 -33.47857 -32.42928 -32.36059 -31.58984 -29.44985 -28.56109 -27.98150 -27.19376 -25.62646 -25.10588 -23.87885 -21.31829 -20.59204 -19.92836 -19.13584 -17.93556 -17.64763 -16.58684 -16.32866 -15.95995 -15.78243 -15.17973 -14.91030 -14.81425 -14.38262 -14.01262 -13.74973 -13.42965 -13.30877 -13.11352 -13.02051 -12.90447 -12.60042 -12.50037 -12.41724 -12.27008 -11.98088 -11.83284 -11.77337 -11.74677 -11.27260 -11.12754 -11.07523 -11.03577 -11.03182 -10.77809 -10.04441 -9.99072 -9.80982 -9.44565 -9.26932 -9.06290 -8.49955 -8.32675 -8.18037 -6.45697 -6.21039 -3.90064 1.63834 2.67637 2.83735 2.97688 3.10834 3.19895 3.23982 3.26707 3.63430 3.81662 4.18138 4.20141 4.56478 4.73312 4.89407 4.91481 5.04810 5.11271 5.13215 5.13951 5.18567 5.30382 5.40124 5.43242 5.45532 5.50236 5.51209 5.62767 5.64489 5.68732 5.82430 5.89218 5.92860 5.97949 6.01678 6.13458 6.21949 6.26984 6.36430 6.47872 6.67325 7.04532 7.17908 7.53388 7.58197 7.60626 8.12435 8.34451 8.62293 9.23489 10.86025 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009570 B = 0.004145 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2925.203588 B = 6752.926891 C = 8401.321574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.272 3.728 3 N -0.541 5.541 4 C 0.195 3.805 5 C 0.180 3.820 6 H 0.085 0.915 7 C -0.131 4.131 8 N -0.664 5.664 9 C 0.065 3.935 10 H 0.038 0.962 11 C -0.139 4.139 12 C 0.117 3.883 13 N -0.632 5.632 14 C 0.081 3.919 15 C 0.525 3.475 16 O -0.491 6.491 17 C -0.149 4.149 18 S -0.049 6.049 19 C -0.537 4.537 20 H 0.069 0.931 21 C 0.075 3.925 22 N -0.866 5.866 23 Si 0.915 3.085 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.276 1.276 27 N -0.276 5.276 28 N -0.474 5.474 29 H 0.444 0.556 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.363 0.637 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.086 0.914 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.393 19.110 0.161 21.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.007 4.007 3 N -0.271 5.271 4 C -0.089 4.089 5 C 0.068 3.932 6 H 0.103 0.897 7 C -0.190 4.190 8 N -0.302 5.302 9 C -0.046 4.046 10 H 0.056 0.944 11 C -0.198 4.198 12 C -0.007 4.007 13 N -0.369 5.369 14 C -0.063 4.063 15 C 0.313 3.687 16 O -0.363 6.363 17 C -0.299 4.299 18 S 0.178 5.822 19 C -0.685 4.685 20 H 0.087 0.913 21 C -0.134 4.134 22 N -0.501 5.501 23 Si 0.742 3.258 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.201 1.201 27 N -0.104 5.104 28 N -0.193 5.193 29 H 0.290 0.710 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.188 0.812 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.113 0.887 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.104 0.896 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.898 18.977 1.886 20.280 hybrid contribution -3.125 -1.607 -2.111 4.099 sum -10.024 17.371 -0.224 20.057 Atomic orbital electron populations 1.20360 0.83848 1.04873 1.04397 1.24368 0.96547 0.83143 0.96631 1.70314 1.01310 1.29647 1.25838 1.24986 0.93632 0.91055 0.99271 1.19970 0.83786 0.93956 0.95525 0.89670 1.21772 1.00174 1.03502 0.93518 1.60761 1.46618 1.06475 1.16351 1.22038 0.97840 0.93200 0.91558 0.94432 1.21796 1.01024 0.96189 1.00758 1.21609 0.97249 0.86290 0.95503 1.47975 1.39699 1.07786 1.41477 1.21736 0.91073 1.02409 0.91041 1.20353 0.83471 0.83525 0.81370 1.90767 1.31195 1.84709 1.29618 1.23540 1.02409 0.98915 1.05085 1.85446 1.51024 0.94398 1.51367 1.22825 1.24375 0.94540 1.26765 0.91305 1.24955 0.95743 0.97798 0.94937 1.70011 1.33023 1.19517 1.27562 0.86282 0.80165 0.80041 0.79327 1.19959 1.20785 1.20125 1.78295 0.96219 1.11716 1.24183 1.48121 1.04282 1.10302 1.56586 0.71005 0.89149 0.88614 0.89815 0.92891 0.91400 0.91346 0.81231 0.92270 0.91487 0.92624 0.90266 0.88749 0.92552 0.91149 0.91638 0.90112 0.89617 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.51 36.01 0.38 -0.14 16 2 C 0.27 3.35 8.24 -155.70 -1.28 2.07 16 3 N -0.54 -8.01 11.19 -8.16 -0.09 -8.10 16 4 C 0.19 3.15 6.75 -156.85 -1.06 2.09 16 5 C 0.18 2.60 2.73 -68.86 -0.19 2.42 16 6 H 0.09 1.11 6.93 -51.93 -0.36 0.75 16 7 C -0.13 -1.74 9.50 37.16 0.35 -1.39 16 8 N -0.66 -10.46 5.86 -100.95 -0.59 -11.05 16 9 C 0.06 0.81 2.73 -67.71 -0.18 0.63 16 10 H 0.04 0.46 7.86 -51.92 -0.41 0.05 16 11 C -0.14 -1.39 9.35 37.16 0.35 -1.04 16 12 C 0.12 1.50 5.19 -4.04 -0.02 1.47 16 13 N -0.63 -9.42 2.61 -181.57 -0.47 -9.89 16 14 C 0.08 0.93 10.24 59.85 0.61 1.54 16 15 C 0.53 10.33 6.00 -10.99 -0.07 10.27 16 16 O -0.49 -11.36 14.22 5.55 0.08 -11.29 16 17 C -0.15 -3.15 4.71 36.00 0.17 -2.98 16 18 S -0.05 -1.35 20.57 -107.50 -2.21 -3.56 16 19 C -0.54 -15.29 9.50 30.94 0.29 -15.00 16 20 H 0.07 1.86 7.80 -52.49 -0.41 1.45 16 21 C 0.08 2.14 5.49 -17.43 -0.10 2.04 16 22 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 23 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 N -0.28 -4.93 12.21 32.42 0.40 -4.54 16 28 N -0.47 -6.67 7.45 32.62 0.24 -6.43 16 29 H 0.44 5.21 8.96 -182.33 -1.63 3.57 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.36 6.74 4.09 -39.29 -0.16 6.58 16 37 H 0.06 0.57 7.21 -51.93 -0.37 0.20 16 38 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 41 H 0.09 1.39 7.42 -51.93 -0.39 1.01 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.86 6.44 -51.93 -0.33 0.52 16 44 H 0.06 0.61 8.07 -51.93 -0.42 0.19 16 45 H 0.08 1.64 7.40 -51.92 -0.38 1.26 16 46 H 0.09 1.70 8.11 -51.91 -0.42 1.28 16 47 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 399.10 15.07 6.01 6.01 Total: -1.00 -37.04 399.10 -10.32 -47.36 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -8.65 Total: 8.63 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -0.74 Total: 1.98 kcal Atomic # 7 Polarization: -65.61 SS G_CDS: 0.22 Total: -65.39 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.08 Total: -11.29 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.35 SS G_CDS: -2.21 Total: -3.56 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.04 -10.32 -47.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571377931.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.898 kcal (2) G-P(sol) polarization free energy of solvation -37.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds