Wall clock time and date at job start Sat Apr 11 2020 06:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00080 * 2 1 4 4 H 1.48496 * 109.47056 * 264.98334 * 3 2 1 5 5 H 1.48497 * 109.47146 * 24.98610 * 3 2 1 6 6 H 1.48506 * 109.47010 * 144.98567 * 3 2 1 7 7 C 1.38813 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00238 * 205.68711 * 7 2 1 9 9 N 1.36936 * 120.00093 * 25.68107 * 7 2 1 10 10 C 1.46500 * 119.99672 * 7.76407 * 9 7 2 11 11 C 1.52997 * 109.47081 * 264.01521 * 10 9 7 12 12 C 1.50698 * 109.47378 * 180.02562 * 11 10 9 13 13 O 1.20827 * 120.00058 * 0.02562 * 12 11 10 14 14 O 1.34234 * 120.00477 * 179.97438 * 12 11 10 15 15 C 1.46498 * 119.99990 * 187.76262 * 9 7 2 16 16 C 1.50693 * 109.47341 * 90.00473 * 15 9 7 17 17 O 1.21242 * 120.00101 * 359.97438 * 16 15 9 18 18 N 1.34780 * 120.00405 * 179.97438 * 16 15 9 19 19 C 1.34774 * 120.00058 * 180.02562 * 18 16 15 20 20 O 1.21542 * 120.00033 * 359.97438 * 19 18 16 21 21 N 1.34780 * 120.00058 * 180.02562 * 19 18 16 22 22 C 1.46500 * 120.00264 * 179.97438 * 21 19 18 23 23 C 1.52998 * 109.47007 * 274.99787 * 22 21 19 24 24 C 1.53005 * 109.47093 * 179.97438 * 23 22 21 25 25 C 1.52998 * 109.46713 * 60.00246 * 24 23 22 26 26 C 1.53006 * 109.47309 * 299.99836 * 25 24 23 27 27 C 1.52998 * 109.46953 * 154.99939 * 22 21 19 28 28 H 0.96998 * 119.99719 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47256 * 24.01628 * 10 9 7 30 30 H 1.08999 * 109.47268 * 144.01380 * 10 9 7 31 31 H 1.09002 * 109.47163 * 300.00164 * 11 10 9 32 32 H 1.09000 * 109.47546 * 60.00208 * 11 10 9 33 33 H 0.96695 * 117.00283 * 180.02562 * 14 12 11 34 34 H 1.08998 * 109.47371 * 330.00056 * 15 9 7 35 35 H 1.09004 * 109.46790 * 209.99693 * 15 9 7 36 36 H 0.96998 * 119.99442 * 359.97438 * 18 16 15 37 37 H 0.96998 * 119.99442 * 359.97438 * 21 19 18 38 38 H 1.08998 * 109.46764 * 34.99627 * 22 21 19 39 39 H 1.08997 * 109.47603 * 300.00236 * 23 22 21 40 40 H 1.09006 * 109.47089 * 59.99803 * 23 22 21 41 41 H 1.08997 * 109.46782 * 300.00518 * 24 23 22 42 42 H 1.08993 * 109.46870 * 180.02562 * 24 23 22 43 43 H 1.09000 * 109.47103 * 180.02562 * 25 24 23 44 44 H 1.08999 * 109.47263 * 59.99797 * 25 24 23 45 45 H 1.08999 * 109.46926 * 300.00167 * 26 25 24 46 46 H 1.08992 * 109.47147 * 180.02562 * 26 25 24 47 47 H 1.08995 * 109.47077 * 300.00046 * 27 22 21 48 48 H 1.08999 * 109.47263 * 59.99839 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6037 1.9852 -1.3947 5 1 1.3987 2.6809 0.5914 6 1 3.4908 1.4730 0.8034 7 6 2.0102 -1.2022 0.0005 8 1 3.0103 -1.2482 0.4060 9 7 1.4270 -2.3297 -0.5129 10 6 0.1445 -2.2363 -1.2147 11 6 -0.9930 -2.5581 -0.2434 12 6 -2.3123 -2.4626 -0.9654 13 8 -2.3400 -2.1679 -2.1368 14 8 -3.4567 -2.7059 -0.3074 15 6 2.0857 -3.6294 -0.3604 16 6 1.6251 -4.2789 0.9190 17 8 0.8261 -3.7120 1.6332 18 7 2.1015 -5.4900 1.2695 19 6 1.6891 -6.0711 2.4135 20 8 0.8881 -5.5027 3.1294 21 7 2.1659 -7.2820 2.7642 22 6 1.7181 -7.9134 4.0080 23 6 2.5684 -7.4038 5.1734 24 6 2.1004 -8.0628 6.4726 25 6 2.2508 -9.5810 6.3572 26 6 1.4005 -10.0906 5.1917 27 6 1.8690 -9.4315 3.8923 28 1 -0.4849 0.8401 -0.0004 29 1 0.0156 -1.2261 -1.6032 30 1 0.1294 -2.9477 -2.0403 31 1 -0.8641 -3.5683 0.1452 32 1 -0.9780 -1.8466 0.5823 33 1 -4.2778 -2.6326 -0.8128 34 1 3.1659 -3.4877 -0.3276 35 1 1.8284 -4.2684 -1.2052 36 1 2.7405 -5.9437 0.6979 37 1 2.8055 -7.7354 2.1930 38 1 0.6719 -7.6646 4.1856 39 1 3.6147 -7.6525 4.9959 40 1 2.4610 -6.3222 5.2558 41 1 1.0542 -7.8137 6.6498 42 1 2.7059 -7.6994 7.3028 43 1 1.9169 -10.0505 7.2825 44 1 3.2970 -9.8301 6.1798 45 1 0.3543 -9.8416 5.3691 46 1 1.5072 -11.1722 5.1098 47 1 1.2633 -9.7946 3.0620 48 1 2.9152 -9.6803 3.7147 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072326.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:37 Heat of formation + Delta-G solvation = -139.691568 kcal Electronic energy + Delta-G solvation = -30744.639288 eV Core-core repulsion = 26414.360543 eV Total energy + Delta-G solvation = -4330.278745 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.69656 -39.33914 -38.97467 -37.48506 -35.75480 -35.13181 -34.24603 -33.70671 -31.44708 -31.01830 -30.39371 -29.40333 -27.01887 -24.62120 -23.43612 -22.88937 -21.98959 -20.89791 -20.32924 -19.89908 -19.66435 -18.42818 -17.40000 -16.80231 -16.72390 -15.79268 -15.59164 -15.52290 -15.17275 -14.99452 -14.73762 -14.51827 -14.46556 -14.07867 -13.78538 -13.57857 -13.17080 -13.06325 -12.89041 -12.56897 -12.43968 -12.31050 -11.99803 -11.52891 -11.46502 -11.41562 -11.12756 -10.93154 -10.88018 -10.79664 -10.70324 -10.64429 -10.46663 -10.33701 -10.17568 -9.93412 -9.69813 -9.54380 -9.43469 -9.01809 -8.99175 -8.42115 -7.11387 -5.88160 -3.19039 2.67379 2.77523 3.17329 3.39592 3.45836 3.47899 3.80370 4.00954 4.13077 4.41611 4.46431 4.49421 4.68364 4.88480 4.99735 5.17721 5.21416 5.23598 5.24081 5.36055 5.36981 5.49406 5.51121 5.73634 5.78898 5.83093 5.84602 5.96352 5.97938 6.08290 6.11817 6.17624 6.23312 6.44232 6.47443 6.57225 6.76071 6.77726 7.01226 7.22446 7.51380 7.68252 7.83313 7.85610 8.21136 8.72139 8.78224 8.84682 9.08583 9.69551 10.10822 11.17492 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013230 B = 0.002762 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.871445 B =10135.178663 C =11287.154173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.007 3.993 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.260 4.260 8 H 0.080 0.920 9 N -0.561 5.561 10 C 0.181 3.819 11 C -0.113 4.113 12 C 0.485 3.515 13 O -0.537 6.537 14 O -0.527 6.527 15 C 0.131 3.869 16 C 0.461 3.539 17 O -0.438 6.438 18 N -0.700 5.700 19 C 0.687 3.313 20 O -0.534 6.534 21 N -0.744 5.744 22 C 0.162 3.838 23 C -0.131 4.131 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.116 4.116 27 C -0.125 4.125 28 H 0.257 0.743 29 H 0.105 0.895 30 H 0.019 0.981 31 H 0.070 0.930 32 H 0.142 0.858 33 H 0.390 0.610 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.400 0.600 37 H 0.393 0.607 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.787 -20.824 5.069 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.192 4.192 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.389 4.389 8 H 0.098 0.902 9 N -0.278 5.278 10 C 0.056 3.944 11 C -0.152 4.152 12 C 0.329 3.671 13 O -0.427 6.427 14 O -0.338 6.338 15 C -0.003 4.003 16 C 0.244 3.756 17 O -0.302 6.302 18 N -0.368 5.368 19 C 0.387 3.613 20 O -0.405 6.405 21 N -0.401 5.401 22 C 0.057 3.943 23 C -0.170 4.170 24 C -0.156 4.156 25 C -0.158 4.158 26 C -0.154 4.154 27 C -0.163 4.163 28 H 0.067 0.933 29 H 0.123 0.877 30 H 0.037 0.963 31 H 0.088 0.912 32 H 0.159 0.841 33 H 0.247 0.753 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.233 0.767 37 H 0.226 0.774 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.750 -19.582 6.056 21.040 hybrid contribution 0.433 0.253 -0.564 0.754 sum 5.183 -19.330 5.492 20.752 Atomic orbital electron populations 1.70049 1.05270 1.25783 1.52289 1.24779 0.95250 0.98450 1.00728 0.86218 0.79047 0.83261 0.77733 1.21293 1.21850 1.20627 1.19279 0.97299 0.85311 1.36977 0.90241 1.44417 1.21072 1.00693 1.61601 1.20855 0.81419 1.02332 0.89801 1.22402 0.86110 1.03753 1.02978 1.24570 0.86184 0.70612 0.85711 1.90590 1.88004 1.45651 1.18434 1.84697 1.17522 1.83380 1.48190 1.21160 0.98918 0.88610 0.91604 1.24299 0.81808 0.78603 0.90890 1.90810 1.28598 1.59707 1.51066 1.45085 1.46737 1.22015 1.22977 1.16535 0.81561 0.81148 0.82033 1.91056 1.34673 1.62874 1.51940 1.45455 1.49531 1.19490 1.25626 1.20826 0.99688 0.91194 0.82634 1.21951 0.99413 1.01302 0.94316 1.21499 1.01943 0.94907 0.97235 1.21574 1.00119 0.95931 0.98220 1.21489 1.00168 0.99680 0.94061 1.21810 1.01982 0.93983 0.98530 0.93288 0.87741 0.96264 0.91204 0.84089 0.75322 0.89689 0.90536 0.76671 0.77363 0.89407 0.91987 0.91143 0.91635 0.91789 0.91956 0.91987 0.91573 0.91610 0.91309 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.91 8.63 55.49 0.48 -24.43 16 2 C 0.01 0.18 4.89 -17.43 -0.09 0.09 16 3 Si 0.91 21.43 29.62 -169.99 -5.04 16.39 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.26 -6.78 9.70 -15.06 -0.15 -6.92 16 8 H 0.08 2.01 7.94 -52.48 -0.42 1.60 16 9 N -0.56 -13.16 2.12 -174.61 -0.37 -13.53 16 10 C 0.18 4.36 4.21 -4.04 -0.02 4.34 16 11 C -0.11 -2.71 4.62 -27.89 -0.13 -2.84 16 12 C 0.48 10.80 8.33 36.00 0.30 11.10 16 13 O -0.54 -12.75 16.74 -18.75 -0.31 -13.06 16 14 O -0.53 -10.00 13.42 -39.27 -0.53 -10.52 16 15 C 0.13 2.32 6.19 -5.20 -0.03 2.29 16 16 C 0.46 8.87 7.48 -10.99 -0.08 8.79 16 17 O -0.44 -11.05 12.44 -18.22 -0.23 -11.28 16 18 N -0.70 -9.91 5.24 -15.78 -0.08 -9.99 16 19 C 0.69 10.94 8.47 -86.92 -0.74 10.20 16 20 O -0.53 -11.67 14.41 -18.48 -0.27 -11.94 16 21 N -0.74 -7.91 5.08 -58.69 -0.30 -8.21 16 22 C 0.16 1.66 2.45 -67.93 -0.17 1.49 16 23 C -0.13 -1.34 5.49 -26.73 -0.15 -1.49 16 24 C -0.12 -1.01 5.92 -26.73 -0.16 -1.16 16 25 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 26 C -0.12 -0.76 5.93 -26.70 -0.16 -0.92 16 27 C -0.12 -0.88 5.39 -26.71 -0.14 -1.02 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.10 2.84 5.78 -51.93 -0.30 2.54 16 30 H 0.02 0.42 7.94 -51.93 -0.41 0.01 16 31 H 0.07 1.68 6.42 -51.93 -0.33 1.34 16 32 H 0.14 3.94 6.36 -51.93 -0.33 3.61 16 33 H 0.39 5.25 9.10 45.56 0.41 5.67 16 34 H 0.09 1.31 8.03 -51.93 -0.42 0.90 16 35 H 0.08 1.11 7.95 -51.93 -0.41 0.70 16 36 H 0.40 3.50 8.71 -40.82 -0.36 3.14 16 37 H 0.39 2.71 8.62 -40.82 -0.35 2.36 16 38 H 0.09 1.15 7.58 -51.93 -0.39 0.75 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 388.17 15.07 5.85 5.85 Total: -1.00 -37.28 388.17 -9.32 -46.60 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -6.67 Total: 11.13 kcal Atomic # 6 Polarization: 24.85 SS G_CDS: -1.86 Total: 22.99 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.27 Total: -56.16 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -1.33 Total: -46.81 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.04 Total: 16.39 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.28 -9.32 -46.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072326.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.089 kcal (2) G-P(sol) polarization free energy of solvation -37.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds