Wall clock time and date at job start Sat Apr 11 2020 06:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00080 * 2 1 4 4 H 1.48496 * 109.47056 * 264.98334 * 3 2 1 5 5 H 1.48497 * 109.47146 * 24.98610 * 3 2 1 6 6 H 1.48506 * 109.47010 * 144.98567 * 3 2 1 7 7 C 1.38813 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00238 * 205.68711 * 7 2 1 9 9 N 1.36936 * 120.00093 * 25.68107 * 7 2 1 10 10 C 1.46500 * 119.99672 * 7.76407 * 9 7 2 11 11 C 1.52997 * 109.47081 * 264.01521 * 10 9 7 12 12 C 1.50698 * 109.47378 * 180.02562 * 11 10 9 13 13 O 1.20827 * 120.00058 * 0.02562 * 12 11 10 14 14 O 1.34234 * 120.00477 * 179.97438 * 12 11 10 15 15 C 1.46498 * 119.99990 * 187.76262 * 9 7 2 16 16 C 1.50693 * 109.47341 * 90.00473 * 15 9 7 17 17 O 1.21242 * 120.00101 * 359.97438 * 16 15 9 18 18 N 1.34780 * 120.00405 * 179.97438 * 16 15 9 19 19 C 1.34774 * 120.00058 * 180.02562 * 18 16 15 20 20 O 1.21542 * 120.00033 * 359.97438 * 19 18 16 21 21 N 1.34780 * 120.00058 * 180.02562 * 19 18 16 22 22 C 1.46500 * 120.00264 * 179.97438 * 21 19 18 23 23 C 1.52998 * 109.47007 * 274.99787 * 22 21 19 24 24 C 1.53005 * 109.47093 * 179.97438 * 23 22 21 25 25 C 1.52998 * 109.46713 * 60.00246 * 24 23 22 26 26 C 1.53006 * 109.47309 * 299.99836 * 25 24 23 27 27 C 1.52998 * 109.46953 * 154.99939 * 22 21 19 28 28 H 0.96998 * 119.99719 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47256 * 24.01628 * 10 9 7 30 30 H 1.08999 * 109.47268 * 144.01380 * 10 9 7 31 31 H 1.09002 * 109.47163 * 300.00164 * 11 10 9 32 32 H 1.09000 * 109.47546 * 60.00208 * 11 10 9 33 33 H 0.96695 * 117.00283 * 180.02562 * 14 12 11 34 34 H 1.08998 * 109.47371 * 330.00056 * 15 9 7 35 35 H 1.09004 * 109.46790 * 209.99693 * 15 9 7 36 36 H 0.96998 * 119.99442 * 359.97438 * 18 16 15 37 37 H 0.96998 * 119.99442 * 359.97438 * 21 19 18 38 38 H 1.08998 * 109.46764 * 34.99627 * 22 21 19 39 39 H 1.08997 * 109.47603 * 300.00236 * 23 22 21 40 40 H 1.09006 * 109.47089 * 59.99803 * 23 22 21 41 41 H 1.08997 * 109.46782 * 300.00518 * 24 23 22 42 42 H 1.08993 * 109.46870 * 180.02562 * 24 23 22 43 43 H 1.09000 * 109.47103 * 180.02562 * 25 24 23 44 44 H 1.08999 * 109.47263 * 59.99797 * 25 24 23 45 45 H 1.08999 * 109.46926 * 300.00167 * 26 25 24 46 46 H 1.08992 * 109.47147 * 180.02562 * 26 25 24 47 47 H 1.08995 * 109.47077 * 300.00046 * 27 22 21 48 48 H 1.08999 * 109.47263 * 59.99839 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6037 1.9852 -1.3947 5 1 1.3987 2.6809 0.5914 6 1 3.4908 1.4730 0.8034 7 6 2.0102 -1.2022 0.0005 8 1 3.0103 -1.2482 0.4060 9 7 1.4270 -2.3297 -0.5129 10 6 0.1445 -2.2363 -1.2147 11 6 -0.9930 -2.5581 -0.2434 12 6 -2.3123 -2.4626 -0.9654 13 8 -2.3400 -2.1679 -2.1368 14 8 -3.4567 -2.7059 -0.3074 15 6 2.0857 -3.6294 -0.3604 16 6 1.6251 -4.2789 0.9190 17 8 0.8261 -3.7120 1.6332 18 7 2.1015 -5.4900 1.2695 19 6 1.6891 -6.0711 2.4135 20 8 0.8881 -5.5027 3.1294 21 7 2.1659 -7.2820 2.7642 22 6 1.7181 -7.9134 4.0080 23 6 2.5684 -7.4038 5.1734 24 6 2.1004 -8.0628 6.4726 25 6 2.2508 -9.5810 6.3572 26 6 1.4005 -10.0906 5.1917 27 6 1.8690 -9.4315 3.8923 28 1 -0.4849 0.8401 -0.0004 29 1 0.0156 -1.2261 -1.6032 30 1 0.1294 -2.9477 -2.0403 31 1 -0.8641 -3.5683 0.1452 32 1 -0.9780 -1.8466 0.5823 33 1 -4.2778 -2.6326 -0.8128 34 1 3.1659 -3.4877 -0.3276 35 1 1.8284 -4.2684 -1.2052 36 1 2.7405 -5.9437 0.6979 37 1 2.8055 -7.7354 2.1930 38 1 0.6719 -7.6646 4.1856 39 1 3.6147 -7.6525 4.9959 40 1 2.4610 -6.3222 5.2558 41 1 1.0542 -7.8137 6.6498 42 1 2.7059 -7.6994 7.3028 43 1 1.9169 -10.0505 7.2825 44 1 3.2970 -9.8301 6.1798 45 1 0.3543 -9.8416 5.3691 46 1 1.5072 -11.1722 5.1098 47 1 1.2633 -9.7946 3.0620 48 1 2.9152 -9.6803 3.7147 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072326.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:36 Heat of formation + Delta-G solvation = -167.074913 kcal Electronic energy + Delta-G solvation = -30745.826719 eV Core-core repulsion = 26414.360543 eV Total energy + Delta-G solvation = -4331.466176 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.01755 -41.07259 -40.05835 -38.74726 -37.46883 -36.85514 -35.59188 -34.87271 -33.34803 -32.19134 -31.67910 -30.31886 -28.63514 -26.50543 -24.70011 -23.60443 -23.31585 -22.17068 -21.61520 -21.33257 -20.90272 -19.59361 -19.18145 -18.55219 -18.03652 -17.28408 -17.07569 -16.90014 -16.74403 -16.53999 -16.09619 -15.66010 -15.45410 -15.29132 -15.03785 -14.90867 -14.68903 -14.48299 -14.05425 -13.81438 -13.78330 -13.44382 -13.29719 -13.11905 -12.97807 -12.68778 -12.47788 -12.39910 -12.25115 -12.07256 -11.99411 -11.91594 -11.87624 -11.54699 -11.47729 -11.39310 -11.35486 -11.18702 -10.94851 -10.68223 -10.29010 -10.02616 -8.99131 -7.86541 -5.17975 1.33490 1.38194 1.47162 1.51603 1.57230 1.60458 2.36444 2.45342 2.56441 3.06454 3.31752 3.65330 3.72680 3.83044 4.03233 4.14435 4.23102 4.31843 4.39857 4.44883 4.55703 4.57791 4.62422 4.65780 4.71762 4.72404 4.87752 4.89466 4.96614 5.03752 5.12476 5.20817 5.23389 5.33820 5.35260 5.41077 5.49068 5.51529 5.58478 5.61427 5.75178 5.81216 5.87771 6.27294 6.79905 7.10950 7.16255 7.45465 7.53298 7.82503 8.19316 9.17158 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013230 B = 0.002762 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.871445 B =10135.178663 C =11287.154173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.050 4.050 3 Si 0.965 3.035 4 H -0.283 1.283 5 H -0.306 1.306 6 H -0.272 1.272 7 C -0.259 4.259 8 H 0.085 0.915 9 N -0.578 5.578 10 C 0.190 3.810 11 C -0.099 4.099 12 C 0.492 3.508 13 O -0.552 6.552 14 O -0.522 6.522 15 C 0.128 3.872 16 C 0.467 3.533 17 O -0.505 6.505 18 N -0.677 5.677 19 C 0.683 3.317 20 O -0.597 6.597 21 N -0.716 5.716 22 C 0.159 3.841 23 C -0.127 4.127 24 C -0.118 4.118 25 C -0.116 4.116 26 C -0.117 4.117 27 C -0.114 4.114 28 H 0.245 0.755 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.418 0.582 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.430 0.570 37 H 0.417 0.583 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.027 0.973 41 H 0.048 0.952 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.053 0.947 46 H 0.087 0.913 47 H 0.075 0.925 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.000 -24.121 4.279 25.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.245 4.245 3 Si 0.794 3.206 4 H -0.210 1.210 5 H -0.234 1.234 6 H -0.197 1.197 7 C -0.388 4.388 8 H 0.103 0.897 9 N -0.295 5.295 10 C 0.064 3.936 11 C -0.139 4.139 12 C 0.337 3.663 13 O -0.444 6.444 14 O -0.335 6.335 15 C -0.004 4.004 16 C 0.252 3.748 17 O -0.373 6.373 18 N -0.347 5.347 19 C 0.384 3.616 20 O -0.473 6.473 21 N -0.374 5.374 22 C 0.054 3.946 23 C -0.166 4.166 24 C -0.156 4.156 25 C -0.153 4.153 26 C -0.155 4.155 27 C -0.152 4.152 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.278 0.722 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.269 0.731 37 H 0.255 0.745 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.046 0.954 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.072 0.928 46 H 0.106 0.894 47 H 0.094 0.906 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.051 -23.006 5.229 24.624 hybrid contribution -0.242 1.104 -0.258 1.159 sum 6.808 -21.902 4.971 23.469 Atomic orbital electron populations 1.70246 1.06352 1.25207 1.54504 1.25474 0.95922 1.01169 1.01938 0.85319 0.77873 0.79828 0.77586 1.20955 1.23369 1.19717 1.19578 0.97446 0.86418 1.35406 0.89726 1.44481 1.20979 1.02387 1.61676 1.20619 0.81975 1.00801 0.90241 1.22071 0.87712 1.02225 1.01845 1.24137 0.86631 0.70340 0.85221 1.90578 1.88434 1.46402 1.18956 1.84612 1.18068 1.82584 1.48215 1.21498 0.99991 0.86872 0.91989 1.24258 0.80586 0.79362 0.90570 1.90814 1.31666 1.61798 1.53041 1.44479 1.46526 1.20742 1.22916 1.16729 0.81047 0.82125 0.81725 1.91034 1.37609 1.64810 1.53864 1.45213 1.48792 1.17520 1.25867 1.20937 0.97747 0.93684 0.82269 1.21896 1.00573 0.98772 0.95320 1.21508 1.00916 0.96771 0.96433 1.21553 1.01062 0.93819 0.98862 1.21524 0.99445 1.00885 0.93618 1.21773 1.03712 0.90582 0.99160 0.94535 0.91186 0.94147 0.91485 0.88150 0.72192 0.86515 0.86284 0.73141 0.74519 0.92948 0.90008 0.95355 0.93326 0.91338 0.91010 0.90541 0.92793 0.89417 0.90632 0.88990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.53 8.63 21.65 0.19 -53.34 16 2 C -0.05 -2.73 4.89 84.86 0.42 -2.32 16 3 Si 0.96 45.10 29.62 68.60 2.03 47.13 16 4 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 5 H -0.31 -14.88 7.11 99.48 0.71 -14.17 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.26 -13.54 9.70 84.03 0.82 -12.72 16 8 H 0.08 4.23 7.94 -2.91 -0.02 4.21 16 9 N -0.58 -26.86 2.12 -706.36 -1.49 -28.36 16 10 C 0.19 9.18 4.21 86.38 0.36 9.55 16 11 C -0.10 -4.86 4.62 29.85 0.14 -4.72 16 12 C 0.49 22.08 8.33 71.24 0.59 22.67 16 13 O -0.55 -26.17 16.74 21.96 0.37 -25.80 16 14 O -0.52 -19.53 13.42 -51.46 -0.69 -20.22 16 15 C 0.13 4.24 6.19 85.63 0.53 4.77 16 16 C 0.47 17.58 7.48 87.65 0.66 18.24 16 17 O -0.50 -26.20 12.44 19.85 0.25 -25.95 16 18 N -0.68 -17.90 5.24 -440.52 -2.31 -20.21 16 19 C 0.68 21.46 8.47 179.05 1.52 22.98 16 20 O -0.60 -27.25 14.41 18.91 0.27 -26.98 16 21 N -0.72 -13.96 5.08 -457.87 -2.33 -16.28 16 22 C 0.16 3.13 2.45 44.99 0.11 3.24 16 23 C -0.13 -2.55 5.49 30.60 0.17 -2.38 16 24 C -0.12 -1.96 5.92 30.60 0.18 -1.78 16 25 C -0.12 -1.26 5.92 30.60 0.18 -1.08 16 26 C -0.12 -1.22 5.93 30.61 0.18 -1.04 16 27 C -0.11 -1.26 5.39 30.61 0.17 -1.09 16 28 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 29 H 0.07 3.91 5.78 -2.39 -0.01 3.90 16 30 H 0.04 1.75 7.94 -2.39 -0.02 1.73 16 31 H 0.07 3.30 6.42 -2.39 -0.02 3.28 16 32 H 0.10 5.91 6.36 -2.39 -0.02 5.89 16 33 H 0.42 10.62 9.10 -74.06 -0.67 9.95 16 34 H 0.12 3.17 8.03 -2.39 -0.02 3.15 16 35 H 0.12 2.97 7.95 -2.39 -0.02 2.95 16 36 H 0.43 5.89 8.71 -92.71 -0.81 5.08 16 37 H 0.42 4.20 8.62 -92.71 -0.80 3.40 16 38 H 0.05 1.44 7.58 -2.39 -0.02 1.42 16 39 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 42 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -88.15 388.17 1.03 -87.12 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: -1.27 Total: 28.60 kcal Atomic # 6 Polarization: 48.29 SS G_CDS: 6.01 Total: 54.30 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -5.94 Total: -118.19 kcal Atomic # 8 Polarization: -99.15 SS G_CDS: 0.20 Total: -98.96 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -88.15 1.03 -87.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072326.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.959 kcal (2) G-P(sol) polarization free energy of solvation -88.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds