Wall clock time and date at job start Sat Apr 11 2020 06:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99734 * 2 1 4 4 H 1.48497 * 109.46987 * 269.99657 * 3 2 1 5 5 H 1.48499 * 109.46973 * 29.99546 * 3 2 1 6 6 H 1.48498 * 109.47117 * 149.99423 * 3 2 1 7 7 C 1.37880 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99702 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99795 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46944 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47080 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46773 * 179.97438 * 11 10 9 13 13 C 1.34781 * 119.99658 * 179.97438 * 12 11 10 14 14 O 1.21588 * 119.99997 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99967 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00274 * 180.02562 * 15 13 12 17 17 H 1.09004 * 109.62675 * 324.59822 * 16 15 13 18 18 C 1.53059 * 109.63365 * 203.99987 * 16 15 13 19 19 C 1.51788 * 110.74325 * 155.38227 * 18 16 15 20 20 C 1.51773 * 113.81521 * 66.80465 * 19 18 16 21 21 C 1.53496 * 110.82309 * 292.92721 * 20 19 18 22 22 N 1.47192 * 108.37676 * 86.58937 * 21 20 19 23 23 C 1.46493 * 119.78824 * 108.06543 * 22 21 20 24 24 C 1.50706 * 109.47153 * 269.72777 * 23 22 21 25 25 O 1.20825 * 119.99859 * 359.97438 * 24 23 22 26 26 O 1.34224 * 120.00295 * 180.02562 * 24 23 22 27 27 C 1.33379 * 120.42628 * 287.78947 * 22 21 20 28 28 O 1.21275 * 119.88979 * 180.56336 * 27 22 21 29 29 H 0.96993 * 120.00682 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47278 * 60.00229 * 9 7 2 31 31 H 1.09001 * 109.47618 * 300.00088 * 9 7 2 32 32 H 1.08998 * 109.46953 * 60.00022 * 10 9 7 33 33 H 1.08996 * 109.47313 * 300.00104 * 10 9 7 34 34 H 1.08998 * 109.47312 * 60.00116 * 11 10 9 35 35 H 1.09000 * 109.46765 * 299.99751 * 11 10 9 36 36 H 0.96995 * 120.00261 * 359.97438 * 12 11 10 37 37 H 0.97008 * 119.99939 * 359.97438 * 15 13 12 38 38 H 1.09000 * 109.22054 * 275.70481 * 18 16 15 39 39 H 1.09001 * 109.22298 * 35.04935 * 18 16 15 40 40 H 1.08998 * 108.61625 * 187.92752 * 19 18 16 41 41 H 1.09002 * 108.61405 * 305.82266 * 19 18 16 42 42 H 1.09002 * 109.19536 * 53.36203 * 20 19 18 43 43 H 1.08998 * 109.19758 * 172.68344 * 20 19 18 44 44 H 1.08999 * 109.72683 * 326.93587 * 21 20 19 45 45 H 1.09000 * 109.76760 * 206.26245 * 21 20 19 46 46 H 1.08997 * 109.47261 * 149.72858 * 23 22 21 47 47 H 1.09000 * 109.47452 * 29.72900 * 23 22 21 48 48 H 0.96700 * 117.00196 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9871 0.0012 12 7 2.4326 -6.1005 0.0018 13 6 1.9833 -7.3713 0.0019 14 8 0.7879 -7.5935 0.0010 15 7 2.8592 -8.3956 0.0030 16 6 2.3709 -9.7769 0.0025 17 1 1.4592 -9.8432 0.5963 18 6 3.4406 -10.7006 0.5902 19 6 2.8106 -11.9588 1.1594 20 6 2.1871 -12.8607 0.1099 21 6 0.9654 -12.1881 -0.5315 22 7 1.4299 -11.3531 -1.6511 23 6 1.1649 -11.7715 -3.0298 24 6 2.3069 -12.6210 -3.5253 25 8 3.2460 -12.8526 -2.8012 26 8 2.2813 -13.1193 -4.7713 27 6 2.0857 -10.2152 -1.4185 28 8 2.4550 -9.5296 -2.3482 29 1 -0.4851 0.8399 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6241 -2.5567 0.8903 32 1 2.8714 -3.6038 0.8923 33 1 2.8728 -3.6047 -0.8876 34 1 0.8548 -5.0450 -0.8895 35 1 0.8529 -5.0447 0.8905 36 1 3.3862 -5.9233 0.0021 37 1 3.8129 -8.2183 0.0033 38 1 4.1469 -10.9757 -0.1931 39 1 3.9723 -10.1750 1.3834 40 1 3.5775 -12.5221 1.6910 41 1 2.0370 -11.6695 1.8706 42 1 2.9259 -13.0764 -0.6620 43 1 1.8758 -13.7942 0.5786 44 1 0.4601 -11.5637 0.2053 45 1 0.2785 -12.9486 -0.9028 46 1 1.0654 -10.8907 -3.6641 47 1 0.2413 -12.3493 -3.0630 48 1 3.0365 -13.6581 -5.0443 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605581583.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:39 Heat of formation + Delta-G solvation = -163.533004 kcal Electronic energy + Delta-G solvation = -30132.956655 eV Core-core repulsion = 25801.644067 eV Total energy + Delta-G solvation = -4331.312587 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.37805 -40.29970 -39.33000 -37.06274 -36.59425 -35.88582 -35.12500 -33.67509 -33.19454 -31.27488 -30.22177 -29.60879 -26.84166 -25.72641 -24.46133 -23.08349 -22.24224 -21.29797 -20.74859 -20.31598 -19.27030 -18.58936 -18.07388 -17.87461 -17.47163 -16.82834 -16.34501 -16.13082 -15.74454 -15.27432 -15.21702 -14.54805 -14.52772 -14.43523 -14.20430 -14.04145 -13.95387 -13.71335 -13.39415 -13.29264 -12.82646 -12.54973 -12.24823 -12.09505 -11.91796 -11.76817 -11.68525 -11.49652 -11.32490 -11.12662 -10.88073 -10.86333 -10.67737 -10.56208 -10.31613 -10.10370 -9.81119 -9.40827 -9.26850 -9.16989 -9.08800 -8.56985 -8.33843 -5.98534 -4.01365 1.77935 2.06251 2.36787 2.78738 2.98285 3.33274 3.39372 3.40566 3.42365 4.04977 4.25556 4.26435 4.36859 4.48033 4.53653 4.59540 4.63717 4.80573 4.88508 4.99154 5.03448 5.05652 5.22907 5.37128 5.43495 5.52785 5.58499 5.68686 5.76818 5.86193 5.87370 5.92686 6.15922 6.22885 6.30642 6.58108 6.68106 6.83995 6.91955 7.07127 7.09391 7.46455 7.67822 7.81083 7.88079 8.00734 8.17022 8.41843 8.77204 9.05361 9.62490 11.12792 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.020968 B = 0.001888 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.070335 B =14830.319613 C =15427.668577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.136 3.864 12 N -0.738 5.738 13 C 0.707 3.293 14 O -0.594 6.594 15 N -0.730 5.730 16 C 0.157 3.843 17 H 0.114 0.886 18 C -0.122 4.122 19 C -0.116 4.116 20 C -0.153 4.153 21 C 0.107 3.893 22 N -0.596 5.596 23 C 0.121 3.879 24 C 0.463 3.537 25 O -0.506 6.506 26 O -0.517 6.517 27 C 0.513 3.487 28 O -0.526 6.526 29 H 0.261 0.739 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.395 0.605 37 H 0.400 0.600 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.128 0.872 47 H 0.123 0.877 48 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.315 -33.796 -1.280 34.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C 0.013 3.987 12 N -0.392 5.392 13 C 0.407 3.593 14 O -0.472 6.472 15 N -0.385 5.385 16 C 0.046 3.954 17 H 0.132 0.868 18 C -0.160 4.160 19 C -0.154 4.154 20 C -0.191 4.191 21 C -0.015 4.015 22 N -0.331 5.331 23 C -0.004 4.004 24 C 0.303 3.697 25 O -0.393 6.393 26 O -0.328 6.328 27 C 0.299 3.701 28 O -0.401 6.401 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.228 0.772 37 H 0.234 0.766 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.110 0.890 43 H 0.094 0.906 44 H 0.104 0.896 45 H 0.107 0.893 46 H 0.146 0.854 47 H 0.141 0.859 48 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 4.159 -33.264 -1.431 33.554 hybrid contribution 1.856 0.657 -0.335 1.997 sum 6.015 -32.607 -1.766 33.204 Atomic orbital electron populations 1.69965 1.06040 1.26643 1.50651 1.25036 0.94866 0.99292 0.95343 0.86578 0.79781 0.83451 0.78079 1.20677 1.21235 1.19916 1.21209 0.92995 0.90952 1.50788 0.92652 1.19028 0.93862 0.90801 0.97683 1.21893 0.99794 0.93307 1.00859 1.21515 0.91273 0.84097 1.01851 1.45326 1.10532 1.04288 1.79017 1.15931 0.85147 0.80804 0.77418 1.90897 1.14088 1.84113 1.58101 1.44760 1.09264 1.03720 1.80788 1.20786 1.00099 0.81830 0.92658 0.86805 1.21558 0.97311 0.95573 1.01552 1.21065 1.00856 0.95248 0.98220 1.22070 0.98516 0.98667 0.99840 1.22122 0.96538 0.94416 0.88451 1.47545 1.57481 1.22847 1.05214 1.20881 0.94369 0.99940 0.85209 1.24191 0.88502 0.77799 0.79211 1.90665 1.35421 1.56566 1.56627 1.84524 1.50874 1.64856 1.32570 1.21207 0.76373 0.79700 0.92799 1.90719 1.50661 1.53431 1.45292 0.92956 0.96241 0.96237 0.92747 0.92743 0.91981 0.91922 0.77228 0.76607 0.90676 0.89555 0.90941 0.91393 0.89000 0.90567 0.89558 0.89349 0.85409 0.85891 0.73039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.44 5.27 -26.73 -0.14 -2.58 16 11 C 0.14 2.54 5.67 -4.04 -0.02 2.51 16 12 N -0.74 -11.53 5.56 -65.22 -0.36 -11.90 16 13 C 0.71 11.58 8.53 -86.92 -0.74 10.84 16 14 O -0.59 -11.94 16.02 5.29 0.08 -11.85 16 15 N -0.73 -8.94 4.59 -59.43 -0.27 -9.21 16 16 C 0.16 1.68 2.14 -68.70 -0.15 1.53 16 17 H 0.11 1.24 6.23 -51.93 -0.32 0.92 16 18 C -0.12 -0.89 5.18 -27.32 -0.14 -1.03 16 19 C -0.12 -0.63 5.28 -27.97 -0.15 -0.78 16 20 C -0.15 -0.85 5.75 -27.10 -0.16 -1.00 16 21 C 0.11 0.61 5.94 -3.41 -0.02 0.59 16 22 N -0.60 -5.42 1.96 -174.29 -0.34 -5.76 16 23 C 0.12 0.92 5.98 -5.19 -0.03 0.89 16 24 C 0.46 3.88 8.39 36.01 0.30 4.18 16 25 O -0.51 -5.53 14.98 -18.75 -0.28 -5.81 16 26 O -0.52 -3.15 13.42 -39.24 -0.53 -3.68 16 27 C 0.51 6.46 6.69 -11.25 -0.08 6.38 16 28 O -0.53 -8.73 15.99 5.56 0.09 -8.64 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.39 5.01 8.49 -40.82 -0.35 4.66 16 37 H 0.40 3.86 8.61 -40.82 -0.35 3.50 16 38 H 0.07 0.64 7.86 -51.93 -0.41 0.24 16 39 H 0.09 0.52 8.08 -51.93 -0.42 0.10 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.32 7.88 -51.93 -0.41 -0.09 16 42 H 0.09 0.74 5.71 -51.93 -0.30 0.44 16 43 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.09 0.48 6.71 -51.93 -0.35 0.13 16 45 H 0.09 0.29 7.76 -51.93 -0.40 -0.11 16 46 H 0.13 1.15 7.37 -51.93 -0.38 0.77 16 47 H 0.12 0.47 7.84 -51.93 -0.41 0.06 16 48 H 0.41 0.93 9.10 45.56 0.41 1.35 16 LS Contribution 393.89 15.07 5.94 5.94 Total: -1.00 -39.62 393.89 -8.44 -48.06 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -6.61 Total: 4.10 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -1.87 Total: 8.42 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: -0.24 Total: -53.29 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.63 Total: -29.99 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -39.62 -8.44 -48.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605581583.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.472 kcal (2) G-P(sol) polarization free energy of solvation -39.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds