Wall clock time and date at job start Sat Apr 11 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99734 * 2 1 4 4 H 1.48497 * 109.46987 * 269.99657 * 3 2 1 5 5 H 1.48499 * 109.46973 * 29.99546 * 3 2 1 6 6 H 1.48498 * 109.47117 * 149.99423 * 3 2 1 7 7 C 1.37880 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99702 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99795 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46944 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47080 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46773 * 179.97438 * 11 10 9 13 13 C 1.34781 * 119.99658 * 179.97438 * 12 11 10 14 14 O 1.21588 * 119.99997 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99967 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00274 * 180.02562 * 15 13 12 17 17 H 1.09004 * 109.62675 * 324.59822 * 16 15 13 18 18 C 1.53059 * 109.63365 * 203.99987 * 16 15 13 19 19 C 1.51788 * 110.74325 * 155.38227 * 18 16 15 20 20 C 1.51773 * 113.81521 * 66.80465 * 19 18 16 21 21 C 1.53496 * 110.82309 * 292.92721 * 20 19 18 22 22 N 1.47192 * 108.37676 * 86.58937 * 21 20 19 23 23 C 1.46493 * 119.78824 * 108.06543 * 22 21 20 24 24 C 1.50706 * 109.47153 * 269.72777 * 23 22 21 25 25 O 1.20825 * 119.99859 * 359.97438 * 24 23 22 26 26 O 1.34224 * 120.00295 * 180.02562 * 24 23 22 27 27 C 1.33379 * 120.42628 * 287.78947 * 22 21 20 28 28 O 1.21275 * 119.88979 * 180.56336 * 27 22 21 29 29 H 0.96993 * 120.00682 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47278 * 60.00229 * 9 7 2 31 31 H 1.09001 * 109.47618 * 300.00088 * 9 7 2 32 32 H 1.08998 * 109.46953 * 60.00022 * 10 9 7 33 33 H 1.08996 * 109.47313 * 300.00104 * 10 9 7 34 34 H 1.08998 * 109.47312 * 60.00116 * 11 10 9 35 35 H 1.09000 * 109.46765 * 299.99751 * 11 10 9 36 36 H 0.96995 * 120.00261 * 359.97438 * 12 11 10 37 37 H 0.97008 * 119.99939 * 359.97438 * 15 13 12 38 38 H 1.09000 * 109.22054 * 275.70481 * 18 16 15 39 39 H 1.09001 * 109.22298 * 35.04935 * 18 16 15 40 40 H 1.08998 * 108.61625 * 187.92752 * 19 18 16 41 41 H 1.09002 * 108.61405 * 305.82266 * 19 18 16 42 42 H 1.09002 * 109.19536 * 53.36203 * 20 19 18 43 43 H 1.08998 * 109.19758 * 172.68344 * 20 19 18 44 44 H 1.08999 * 109.72683 * 326.93587 * 21 20 19 45 45 H 1.09000 * 109.76760 * 206.26245 * 21 20 19 46 46 H 1.08997 * 109.47261 * 149.72858 * 23 22 21 47 47 H 1.09000 * 109.47452 * 29.72900 * 23 22 21 48 48 H 0.96700 * 117.00196 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9871 0.0012 12 7 2.4326 -6.1005 0.0018 13 6 1.9833 -7.3713 0.0019 14 8 0.7879 -7.5935 0.0010 15 7 2.8592 -8.3956 0.0030 16 6 2.3709 -9.7769 0.0025 17 1 1.4592 -9.8432 0.5963 18 6 3.4406 -10.7006 0.5902 19 6 2.8106 -11.9588 1.1594 20 6 2.1871 -12.8607 0.1099 21 6 0.9654 -12.1881 -0.5315 22 7 1.4299 -11.3531 -1.6511 23 6 1.1649 -11.7715 -3.0298 24 6 2.3069 -12.6210 -3.5253 25 8 3.2460 -12.8526 -2.8012 26 8 2.2813 -13.1193 -4.7713 27 6 2.0857 -10.2152 -1.4185 28 8 2.4550 -9.5296 -2.3482 29 1 -0.4851 0.8399 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6241 -2.5567 0.8903 32 1 2.8714 -3.6038 0.8923 33 1 2.8728 -3.6047 -0.8876 34 1 0.8548 -5.0450 -0.8895 35 1 0.8529 -5.0447 0.8905 36 1 3.3862 -5.9233 0.0021 37 1 3.8129 -8.2183 0.0033 38 1 4.1469 -10.9757 -0.1931 39 1 3.9723 -10.1750 1.3834 40 1 3.5775 -12.5221 1.6910 41 1 2.0370 -11.6695 1.8706 42 1 2.9259 -13.0764 -0.6620 43 1 1.8758 -13.7942 0.5786 44 1 0.4601 -11.5637 0.2053 45 1 0.2785 -12.9486 -0.9028 46 1 1.0654 -10.8907 -3.6641 47 1 0.2413 -12.3493 -3.0630 48 1 3.0365 -13.6581 -5.0443 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605581583.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:38 Heat of formation + Delta-G solvation = -194.198981 kcal Electronic energy + Delta-G solvation = -30134.286431 eV Core-core repulsion = 25801.644067 eV Total energy + Delta-G solvation = -4332.642364 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.17588 -41.16863 -40.39589 -37.83296 -37.35222 -36.99215 -36.36340 -35.20017 -34.50297 -32.97291 -31.06622 -30.32886 -28.51511 -26.66993 -25.14651 -24.83628 -22.97033 -22.32366 -22.07778 -21.56284 -20.05867 -19.27007 -19.18674 -18.70626 -18.53578 -18.19810 -17.55304 -16.92844 -16.76667 -16.62629 -16.46920 -16.02826 -15.55986 -15.44133 -15.30226 -15.07517 -14.90379 -14.43608 -14.26435 -14.12497 -13.96927 -13.73600 -13.52851 -13.43790 -13.19634 -12.76017 -12.72372 -12.54708 -12.53617 -12.36682 -12.05385 -11.94230 -11.67961 -11.67723 -11.58671 -11.45237 -11.33405 -11.30000 -11.15165 -10.54878 -10.37051 -9.98150 -9.83163 -8.18841 -6.30289 1.13986 1.33644 1.41552 1.43400 1.44609 1.54396 1.79956 2.12910 2.37310 2.42418 3.14623 3.24700 3.33235 3.65073 3.78159 3.98525 4.09103 4.09144 4.16062 4.23135 4.25597 4.32072 4.35879 4.44832 4.56092 4.61557 4.73795 4.93199 4.95918 4.98237 5.00888 5.14108 5.16508 5.20659 5.28973 5.37725 5.43233 5.45982 5.53871 5.67736 5.71545 5.84716 5.92111 6.15943 6.23316 6.86614 6.91712 7.01973 7.03241 7.38940 7.51287 8.93354 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.020968 B = 0.001888 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.070335 B =14830.319613 C =15427.668577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.024 3.976 10 C -0.101 4.101 11 C 0.151 3.849 12 N -0.729 5.729 13 C 0.704 3.296 14 O -0.634 6.634 15 N -0.716 5.716 16 C 0.153 3.847 17 H 0.114 0.886 18 C -0.111 4.111 19 C -0.116 4.116 20 C -0.148 4.148 21 C 0.098 3.902 22 N -0.592 5.592 23 C 0.114 3.886 24 C 0.467 3.533 25 O -0.535 6.535 26 O -0.512 6.512 27 C 0.502 3.498 28 O -0.580 6.580 29 H 0.263 0.737 30 H -0.010 1.010 31 H -0.005 1.005 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.041 0.959 35 H 0.053 0.947 36 H 0.411 0.589 37 H 0.413 0.587 38 H 0.060 0.940 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.119 0.881 46 H 0.110 0.890 47 H 0.165 0.835 48 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.675 -35.246 -0.486 35.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.084 0.916 9 C -0.014 4.014 10 C -0.139 4.139 11 C 0.027 3.973 12 N -0.384 5.384 13 C 0.403 3.597 14 O -0.516 6.516 15 N -0.371 5.371 16 C 0.043 3.957 17 H 0.132 0.868 18 C -0.149 4.149 19 C -0.154 4.154 20 C -0.186 4.186 21 C -0.023 4.023 22 N -0.324 5.324 23 C -0.011 4.011 24 C 0.309 3.691 25 O -0.424 6.424 26 O -0.325 6.325 27 C 0.289 3.711 28 O -0.459 6.459 29 H 0.072 0.928 30 H 0.009 0.991 31 H 0.014 0.986 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.247 0.753 37 H 0.250 0.750 38 H 0.079 0.921 39 H 0.121 0.879 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.118 0.882 44 H 0.108 0.892 45 H 0.137 0.863 46 H 0.128 0.872 47 H 0.183 0.817 48 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 5.572 -34.800 -0.638 35.249 hybrid contribution 1.389 0.986 -0.641 1.821 sum 6.962 -33.814 -1.279 34.547 Atomic orbital electron populations 1.70110 1.07917 1.27799 1.51666 1.26042 0.95788 1.03586 0.94808 0.85397 0.78688 0.78235 0.78406 1.19936 1.20923 1.18405 1.21672 0.93734 0.91995 1.50457 0.91576 1.18938 0.94421 0.92875 0.95132 1.21595 0.98479 0.91712 1.02071 1.21083 0.91285 0.84526 1.00453 1.45007 1.10906 1.03538 1.78969 1.16093 0.85034 0.81389 0.77144 1.90864 1.16051 1.84753 1.59927 1.44658 1.09483 1.03651 1.79288 1.21054 1.01286 0.81288 0.92042 0.86845 1.21545 0.96098 0.95933 1.01371 1.21106 1.01604 0.94311 0.98355 1.22021 0.97664 0.99659 0.99235 1.22470 0.97319 0.94755 0.87742 1.47656 1.55844 1.22129 1.06780 1.21119 0.95983 0.99750 0.84247 1.24234 0.88066 0.77406 0.79443 1.90663 1.36417 1.57847 1.57519 1.84486 1.51828 1.64861 1.31363 1.21569 0.76230 0.80349 0.92906 1.90683 1.53224 1.55348 1.46684 0.92797 0.99123 0.98645 0.91052 0.91778 0.94043 0.92892 0.75264 0.75025 0.92088 0.87897 0.89478 0.90155 0.91332 0.88166 0.89172 0.86295 0.87181 0.81733 0.71080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.88 13.29 21.45 0.28 -57.60 16 2 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 3 Si 0.97 44.49 29.54 68.60 2.03 46.52 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 7 C -0.54 -30.76 9.11 25.60 0.23 -30.53 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 9 C 0.02 1.29 4.97 29.85 0.15 1.43 16 10 C -0.10 -4.06 5.27 30.60 0.16 -3.89 16 11 C 0.15 5.73 5.67 86.38 0.49 6.22 16 12 N -0.73 -22.51 5.56 -478.52 -2.66 -25.17 16 13 C 0.70 23.07 8.53 179.05 1.53 24.60 16 14 O -0.63 -26.02 16.02 -3.99 -0.06 -26.08 16 15 N -0.72 -17.20 4.59 -460.19 -2.11 -19.32 16 16 C 0.15 3.19 2.14 44.50 0.10 3.29 16 17 H 0.11 2.40 6.23 -2.38 -0.01 2.38 16 18 C -0.11 -1.48 5.18 30.22 0.16 -1.32 16 19 C -0.12 -0.99 5.28 29.79 0.16 -0.83 16 20 C -0.15 -1.31 5.75 30.36 0.17 -1.14 16 21 C 0.10 0.92 5.94 86.41 0.51 1.44 16 22 N -0.59 -10.36 1.96 -824.52 -1.61 -11.97 16 23 C 0.11 1.65 5.98 85.64 0.51 2.16 16 24 C 0.47 7.52 8.39 71.24 0.60 8.12 16 25 O -0.53 -11.57 14.98 21.97 0.33 -11.24 16 26 O -0.51 -5.68 13.42 -51.35 -0.69 -6.37 16 27 C 0.50 12.77 6.69 88.10 0.59 13.36 16 28 O -0.58 -19.99 15.99 -3.01 -0.05 -20.04 16 29 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 30 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 31 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 32 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.41 9.86 8.49 -92.71 -0.79 9.08 16 37 H 0.41 7.57 8.61 -92.70 -0.80 6.77 16 38 H 0.06 1.01 7.86 -2.39 -0.02 0.99 16 39 H 0.10 1.02 8.08 -2.39 -0.02 1.00 16 40 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.08 0.53 7.88 -2.39 -0.02 0.51 16 42 H 0.07 1.01 5.71 -2.39 -0.01 1.00 16 43 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.09 0.82 6.71 -2.39 -0.02 0.80 16 45 H 0.12 0.39 7.76 -2.39 -0.02 0.37 16 46 H 0.11 2.05 7.37 -2.39 -0.02 2.04 16 47 H 0.17 0.87 7.84 -2.39 -0.02 0.86 16 48 H 0.43 1.43 9.10 -74.06 -0.67 0.76 16 Total: -1.00 -88.80 393.89 0.03 -88.77 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -1.24 Total: 19.39 kcal Atomic # 6 Polarization: 17.28 SS G_CDS: 5.82 Total: 23.10 kcal Atomic # 7 Polarization: -107.95 SS G_CDS: -6.10 Total: -114.06 kcal Atomic # 8 Polarization: -63.25 SS G_CDS: -0.47 Total: -63.72 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -88.80 0.03 -88.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605581583.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.430 kcal (2) G-P(sol) polarization free energy of solvation -88.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds