Wall clock time and date at job start Sat Apr 11 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00269 * 2 1 4 4 H 1.48499 * 109.47086 * 270.00155 * 3 2 1 5 5 H 1.48503 * 109.47308 * 29.99659 * 3 2 1 6 6 H 1.48495 * 109.47500 * 149.99971 * 3 2 1 7 7 C 1.37880 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99876 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99759 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.46853 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46796 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.46800 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99988 * 180.02562 * 12 11 10 14 14 O 1.21591 * 119.99512 * 0.02562 * 13 12 11 15 15 N 1.34772 * 120.00234 * 180.02562 * 13 12 11 16 16 C 1.46497 * 120.00394 * 180.02562 * 15 13 12 17 17 H 1.09004 * 109.78973 * 42.83629 * 16 15 13 18 18 C 1.53057 * 109.63728 * 163.33615 * 16 15 13 19 19 C 1.51798 * 110.74210 * 34.78891 * 18 16 15 20 20 C 1.51776 * 113.80947 * 66.80074 * 19 18 16 21 21 C 1.52979 * 110.88742 * 292.99853 * 20 19 18 22 22 N 1.47201 * 108.66499 * 86.46823 * 21 20 19 23 23 C 1.46503 * 119.78671 * 108.05970 * 22 21 20 24 24 C 1.50704 * 109.46695 * 90.00096 * 23 22 21 25 25 O 1.20819 * 119.99981 * 0.02562 * 24 23 22 26 26 O 1.34226 * 119.99678 * 179.97438 * 24 23 22 27 27 C 1.33370 * 120.42468 * 288.04633 * 22 21 20 28 28 O 1.21277 * 119.88800 * 180.28559 * 27 22 21 29 29 H 0.97002 * 119.99713 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47106 * 60.00013 * 9 7 2 31 31 H 1.09002 * 109.47230 * 300.00142 * 9 7 2 32 32 H 1.08996 * 109.47051 * 60.00228 * 10 9 7 33 33 H 1.08997 * 109.47385 * 299.99728 * 10 9 7 34 34 H 1.09003 * 109.46570 * 60.00440 * 11 10 9 35 35 H 1.08997 * 109.47101 * 300.00109 * 11 10 9 36 36 H 0.97003 * 120.00306 * 0.02562 * 12 11 10 37 37 H 0.97003 * 119.99708 * 359.97438 * 15 13 12 38 38 H 1.08994 * 109.22642 * 274.46305 * 18 16 15 39 39 H 1.09001 * 109.22126 * 155.10811 * 18 16 15 40 40 H 1.08993 * 108.61485 * 187.92389 * 19 18 16 41 41 H 1.09006 * 108.61417 * 305.83120 * 19 18 16 42 42 H 1.09005 * 109.19562 * 53.36678 * 20 19 18 43 43 H 1.09007 * 109.19376 * 172.63279 * 20 19 18 44 44 H 1.09004 * 109.60718 * 206.21575 * 21 20 19 45 45 H 1.08991 * 109.60644 * 326.71425 * 21 20 19 46 46 H 1.08993 * 109.46968 * 210.00060 * 23 22 21 47 47 H 1.08998 * 109.46982 * 330.00558 * 23 22 21 48 48 H 0.96708 * 117.00081 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6367 0.0014 11 6 5.5515 -2.6367 0.0001 12 7 6.0397 -4.0180 0.0009 13 6 7.3648 -4.2643 0.0005 14 8 8.1549 -3.3401 0.0001 15 7 7.8140 -5.5350 0.0007 16 6 9.2543 -5.8028 0.0009 17 1 9.7545 -5.1308 0.6982 18 6 9.5075 -7.2546 0.4144 19 6 8.4059 -8.1612 -0.1041 20 6 8.3764 -8.2865 -1.6164 21 6 7.9888 -6.9570 -2.2664 22 7 9.2053 -6.1477 -2.4452 23 6 9.7548 -5.9465 -3.7883 24 6 9.1452 -4.7117 -4.4005 25 8 8.3354 -4.0658 -3.7786 26 8 9.5028 -4.3290 -5.6364 27 6 9.8104 -5.5962 -1.3923 28 8 10.8092 -4.9269 -1.5514 29 1 -0.4850 0.8401 -0.0004 30 1 3.8752 -0.6797 0.8894 31 1 3.8745 -0.6809 -0.8905 32 1 3.6577 -3.1515 -0.8879 33 1 3.6585 -3.1495 0.8921 34 1 5.9154 -2.1218 0.8893 35 1 5.9141 -2.1240 -0.8908 36 1 5.4094 -4.7553 0.0016 37 1 7.1836 -6.2722 0.0014 38 1 9.5416 -7.3172 1.5020 39 1 10.4636 -7.5823 0.0064 40 1 8.5416 -9.1539 0.3249 41 1 7.4456 -7.7674 0.2291 42 1 9.3633 -8.5844 -1.9706 43 1 7.6502 -9.0488 -1.8987 44 1 7.5287 -7.1447 -3.2366 45 1 7.2876 -6.4260 -1.6229 46 1 10.8359 -5.8244 -3.7240 47 1 9.5231 -6.8121 -4.4090 48 1 9.0851 -3.5302 -5.9867 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605581584.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:41 Heat of formation + Delta-G solvation = -139.737649 kcal Electronic energy + Delta-G solvation = -31165.700155 eV Core-core repulsion = 26835.419412 eV Total energy + Delta-G solvation = -4330.280743 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.60550 -40.27585 -39.28683 -37.44357 -36.43610 -35.72167 -35.21199 -33.54949 -33.17999 -31.55333 -30.62262 -29.51955 -27.14699 -26.05463 -24.49905 -22.99561 -22.41933 -21.39498 -20.55832 -20.20185 -19.69838 -18.39172 -18.35001 -17.49779 -17.23553 -16.80178 -16.75488 -16.06462 -15.78433 -15.51664 -15.20091 -14.80710 -14.69973 -14.35958 -14.26048 -14.08252 -13.82452 -13.64956 -13.34490 -13.18452 -13.01898 -12.66858 -12.52790 -12.34114 -11.99908 -11.87596 -11.68405 -11.39051 -11.34830 -11.28966 -11.03261 -10.91384 -10.86668 -10.42787 -10.24382 -9.97870 -9.79537 -9.65790 -9.37744 -9.20571 -9.05967 -8.66373 -8.53455 -6.04827 -4.03187 1.98113 2.05088 2.36301 2.79235 3.02195 3.31577 3.33816 3.41057 3.46606 3.98495 4.14040 4.21381 4.26506 4.33030 4.46765 4.51227 4.60948 4.76367 4.89079 4.94380 5.00611 5.03844 5.21589 5.29549 5.29724 5.39672 5.46897 5.54243 5.58578 5.70988 5.74424 5.91331 6.07624 6.18758 6.29163 6.40789 6.51331 6.67266 6.85147 6.87532 6.97591 7.26812 7.40072 7.65486 7.77774 7.85549 8.03677 8.51835 8.68760 8.98908 9.57875 11.08415 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013139 B = 0.002685 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.583966 B =10424.207060 C =11376.683259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.521 4.521 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.111 4.111 11 C 0.134 3.866 12 N -0.737 5.737 13 C 0.699 3.301 14 O -0.576 6.576 15 N -0.743 5.743 16 C 0.159 3.841 17 H 0.121 0.879 18 C -0.124 4.124 19 C -0.127 4.127 20 C -0.141 4.141 21 C 0.095 3.905 22 N -0.590 5.590 23 C 0.123 3.877 24 C 0.451 3.549 25 O -0.489 6.489 26 O -0.521 6.521 27 C 0.520 3.480 28 O -0.531 6.531 29 H 0.263 0.737 30 H 0.019 0.981 31 H 0.014 0.986 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.393 0.607 37 H 0.399 0.601 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.094 0.906 46 H 0.126 0.874 47 H 0.121 0.879 48 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.780 -23.908 -5.858 32.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.559 4.559 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.149 4.149 11 C 0.010 3.990 12 N -0.392 5.392 13 C 0.398 3.602 14 O -0.452 6.452 15 N -0.408 5.408 16 C 0.049 3.951 17 H 0.138 0.862 18 C -0.162 4.162 19 C -0.165 4.165 20 C -0.179 4.179 21 C -0.028 4.028 22 N -0.323 5.323 23 C -0.002 4.002 24 C 0.290 3.710 25 O -0.375 6.375 26 O -0.334 6.334 27 C 0.306 3.694 28 O -0.405 6.405 29 H 0.073 0.927 30 H 0.037 0.963 31 H 0.033 0.967 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.226 0.774 37 H 0.240 0.760 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.112 0.888 46 H 0.143 0.857 47 H 0.139 0.861 48 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 21.828 -22.691 -5.576 31.975 hybrid contribution -0.712 0.862 -0.407 1.190 sum 21.116 -21.829 -5.984 30.955 Atomic orbital electron populations 1.69916 1.06309 1.26933 1.51151 1.25022 0.94745 0.99235 0.94467 0.86780 0.80442 0.83501 0.78625 1.20254 1.21378 1.18840 1.21097 0.89314 0.94475 1.50977 0.91025 1.19502 0.97202 0.91508 0.96715 1.21695 0.90676 1.00986 1.01587 1.21521 0.95613 0.79922 1.01903 1.45265 1.04487 1.10104 1.79322 1.16034 0.83252 0.82956 0.77913 1.90982 1.54846 1.42902 1.56518 1.45698 1.06625 1.07059 1.81433 1.21130 0.81608 0.98873 0.93473 0.86164 1.21608 1.00307 0.91538 1.02714 1.21165 0.99025 1.00488 0.95780 1.21851 1.03392 0.97246 0.95434 1.22302 0.86618 0.91041 1.02823 1.47470 1.28444 1.51644 1.04765 1.20854 1.01169 0.93957 0.84255 1.24126 0.80208 0.87268 0.79367 1.90840 1.31628 1.53733 1.61263 1.84470 1.67843 1.48527 1.32513 1.21037 0.83499 0.77593 0.87284 1.90726 1.26177 1.37708 1.85905 0.92725 0.96270 0.96723 0.92221 0.92139 0.91945 0.91934 0.77370 0.75971 0.89430 0.89883 0.90456 0.91599 0.90733 0.89861 0.89701 0.88840 0.85651 0.86129 0.72857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 7 C -0.52 -14.85 9.66 -34.44 -0.33 -15.18 16 8 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 9 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 10 C -0.11 -2.13 5.27 -26.73 -0.14 -2.27 16 11 C 0.13 2.37 5.67 -4.04 -0.02 2.35 16 12 N -0.74 -10.58 5.56 -65.22 -0.36 -10.94 16 13 C 0.70 10.77 8.43 -86.92 -0.73 10.04 16 14 O -0.58 -11.94 16.05 5.29 0.08 -11.85 16 15 N -0.74 -7.58 3.10 -59.43 -0.18 -7.76 16 16 C 0.16 1.61 2.68 -68.70 -0.18 1.43 16 17 H 0.12 1.49 7.84 -51.93 -0.41 1.08 16 18 C -0.12 -0.67 5.57 -27.31 -0.15 -0.82 16 19 C -0.13 -0.43 5.20 -27.96 -0.15 -0.58 16 20 C -0.14 -0.48 5.73 -27.36 -0.16 -0.63 16 21 C 0.09 0.59 5.84 -3.67 -0.02 0.57 16 22 N -0.59 -5.53 1.94 -174.60 -0.34 -5.87 16 23 C 0.12 1.01 5.91 -5.19 -0.03 0.98 16 24 C 0.45 5.14 8.39 36.01 0.30 5.44 16 25 O -0.49 -7.98 17.19 -18.74 -0.32 -8.30 16 26 O -0.52 -4.51 13.42 -39.25 -0.53 -5.04 16 27 C 0.52 6.52 6.25 -11.26 -0.07 6.45 16 28 O -0.53 -8.84 16.60 5.56 0.09 -8.74 16 29 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 31 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.39 4.30 8.49 -40.82 -0.35 3.96 16 37 H 0.40 2.69 4.36 -40.82 -0.18 2.51 16 38 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.43 7.86 -51.93 -0.41 0.03 16 40 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.07 0.20 5.71 -51.93 -0.30 -0.10 16 42 H 0.07 0.26 8.05 -51.93 -0.42 -0.16 16 43 H 0.08 0.15 8.14 -51.92 -0.42 -0.27 16 44 H 0.08 0.42 7.92 -51.93 -0.41 0.01 16 45 H 0.09 0.69 4.50 -51.93 -0.23 0.46 16 46 H 0.13 1.04 7.38 -51.93 -0.38 0.66 16 47 H 0.12 0.48 8.03 -51.93 -0.42 0.07 16 48 H 0.41 2.31 9.10 45.56 0.41 2.72 16 LS Contribution 387.47 15.07 5.84 5.84 Total: -1.00 -41.91 387.47 -7.91 -49.82 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -6.40 Total: 3.33 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: -1.90 Total: 9.25 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.11 Total: -51.82 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -0.67 Total: -33.94 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -41.91 -7.91 -49.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605581584.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.917 kcal (2) G-P(sol) polarization free energy of solvation -41.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds