Wall clock time and date at job start Sat Apr 11 2020 06:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00269 * 2 1 4 4 H 1.48499 * 109.47086 * 270.00155 * 3 2 1 5 5 H 1.48503 * 109.47308 * 29.99659 * 3 2 1 6 6 H 1.48495 * 109.47500 * 149.99971 * 3 2 1 7 7 C 1.37880 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99876 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99759 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.46853 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46796 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.46800 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99988 * 180.02562 * 12 11 10 14 14 O 1.21591 * 119.99512 * 0.02562 * 13 12 11 15 15 N 1.34772 * 120.00234 * 180.02562 * 13 12 11 16 16 C 1.46497 * 120.00394 * 180.02562 * 15 13 12 17 17 H 1.09004 * 109.78973 * 42.83629 * 16 15 13 18 18 C 1.53057 * 109.63728 * 163.33615 * 16 15 13 19 19 C 1.51798 * 110.74210 * 34.78891 * 18 16 15 20 20 C 1.51776 * 113.80947 * 66.80074 * 19 18 16 21 21 C 1.52979 * 110.88742 * 292.99853 * 20 19 18 22 22 N 1.47201 * 108.66499 * 86.46823 * 21 20 19 23 23 C 1.46503 * 119.78671 * 108.05970 * 22 21 20 24 24 C 1.50704 * 109.46695 * 90.00096 * 23 22 21 25 25 O 1.20819 * 119.99981 * 0.02562 * 24 23 22 26 26 O 1.34226 * 119.99678 * 179.97438 * 24 23 22 27 27 C 1.33370 * 120.42468 * 288.04633 * 22 21 20 28 28 O 1.21277 * 119.88800 * 180.28559 * 27 22 21 29 29 H 0.97002 * 119.99713 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47106 * 60.00013 * 9 7 2 31 31 H 1.09002 * 109.47230 * 300.00142 * 9 7 2 32 32 H 1.08996 * 109.47051 * 60.00228 * 10 9 7 33 33 H 1.08997 * 109.47385 * 299.99728 * 10 9 7 34 34 H 1.09003 * 109.46570 * 60.00440 * 11 10 9 35 35 H 1.08997 * 109.47101 * 300.00109 * 11 10 9 36 36 H 0.97003 * 120.00306 * 0.02562 * 12 11 10 37 37 H 0.97003 * 119.99708 * 359.97438 * 15 13 12 38 38 H 1.08994 * 109.22642 * 274.46305 * 18 16 15 39 39 H 1.09001 * 109.22126 * 155.10811 * 18 16 15 40 40 H 1.08993 * 108.61485 * 187.92389 * 19 18 16 41 41 H 1.09006 * 108.61417 * 305.83120 * 19 18 16 42 42 H 1.09005 * 109.19562 * 53.36678 * 20 19 18 43 43 H 1.09007 * 109.19376 * 172.63279 * 20 19 18 44 44 H 1.09004 * 109.60718 * 206.21575 * 21 20 19 45 45 H 1.08991 * 109.60644 * 326.71425 * 21 20 19 46 46 H 1.08993 * 109.46968 * 210.00060 * 23 22 21 47 47 H 1.08998 * 109.46982 * 330.00558 * 23 22 21 48 48 H 0.96708 * 117.00081 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6367 0.0014 11 6 5.5515 -2.6367 0.0001 12 7 6.0397 -4.0180 0.0009 13 6 7.3648 -4.2643 0.0005 14 8 8.1549 -3.3401 0.0001 15 7 7.8140 -5.5350 0.0007 16 6 9.2543 -5.8028 0.0009 17 1 9.7545 -5.1308 0.6982 18 6 9.5075 -7.2546 0.4144 19 6 8.4059 -8.1612 -0.1041 20 6 8.3764 -8.2865 -1.6164 21 6 7.9888 -6.9570 -2.2664 22 7 9.2053 -6.1477 -2.4452 23 6 9.7548 -5.9465 -3.7883 24 6 9.1452 -4.7117 -4.4005 25 8 8.3354 -4.0658 -3.7786 26 8 9.5028 -4.3290 -5.6364 27 6 9.8104 -5.5962 -1.3923 28 8 10.8092 -4.9269 -1.5514 29 1 -0.4850 0.8401 -0.0004 30 1 3.8752 -0.6797 0.8894 31 1 3.8745 -0.6809 -0.8905 32 1 3.6577 -3.1515 -0.8879 33 1 3.6585 -3.1495 0.8921 34 1 5.9154 -2.1218 0.8893 35 1 5.9141 -2.1240 -0.8908 36 1 5.4094 -4.7553 0.0016 37 1 7.1836 -6.2722 0.0014 38 1 9.5416 -7.3172 1.5020 39 1 10.4636 -7.5823 0.0064 40 1 8.5416 -9.1539 0.3249 41 1 7.4456 -7.7674 0.2291 42 1 9.3633 -8.5844 -1.9706 43 1 7.6502 -9.0488 -1.8987 44 1 7.5287 -7.1447 -3.2366 45 1 7.2876 -6.4260 -1.6229 46 1 10.8359 -5.8244 -3.7240 47 1 9.5231 -6.8121 -4.4090 48 1 9.0851 -3.5302 -5.9867 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605581584.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:40 Heat of formation + Delta-G solvation = -172.883861 kcal Electronic energy + Delta-G solvation = -31167.137483 eV Core-core repulsion = 26835.419412 eV Total energy + Delta-G solvation = -4331.718071 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.44264 -41.23882 -40.39478 -38.26821 -37.30907 -37.03911 -36.23988 -35.18620 -34.26540 -33.22581 -31.45071 -30.29056 -28.81383 -26.81272 -25.11142 -24.67664 -23.15590 -22.51294 -22.16653 -20.93599 -20.52670 -19.54993 -19.23245 -18.90423 -18.34104 -17.99612 -17.58450 -17.08171 -16.84838 -16.64676 -16.32342 -16.07369 -15.80947 -15.51809 -15.27181 -15.02570 -14.88274 -14.78627 -14.43518 -14.17158 -13.87910 -13.74241 -13.70138 -13.64741 -13.12683 -12.87975 -12.76108 -12.72603 -12.59590 -12.01015 -11.98863 -11.83801 -11.81716 -11.69920 -11.65007 -11.61627 -11.36104 -11.32272 -11.25123 -10.77525 -10.39993 -10.03301 -9.73481 -8.30952 -6.34056 1.09668 1.16012 1.34623 1.36351 1.48262 1.54645 1.86471 2.07167 2.31365 2.34638 3.04848 3.21250 3.33988 3.66231 3.81292 3.86933 4.04074 4.07437 4.12450 4.18613 4.18953 4.27650 4.33919 4.48031 4.56374 4.63289 4.67683 4.86467 4.87037 4.94008 5.00409 5.02692 5.14779 5.23475 5.26963 5.37132 5.38092 5.43817 5.49013 5.54055 5.54614 5.63268 5.87013 6.17534 6.26257 6.73317 6.85517 6.98398 7.00281 7.30696 7.50788 8.85314 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013139 B = 0.002685 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.583966 B =10424.207060 C =11376.683259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.008 3.992 3 Si 0.943 3.057 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.251 1.251 7 C -0.528 4.528 8 H 0.042 0.958 9 C -0.013 4.013 10 C -0.095 4.095 11 C 0.148 3.852 12 N -0.726 5.726 13 C 0.696 3.304 14 O -0.633 6.633 15 N -0.716 5.716 16 C 0.155 3.845 17 H 0.090 0.910 18 C -0.114 4.114 19 C -0.127 4.127 20 C -0.132 4.132 21 C 0.085 3.915 22 N -0.584 5.584 23 C 0.118 3.882 24 C 0.453 3.547 25 O -0.548 6.548 26 O -0.512 6.512 27 C 0.510 3.490 28 O -0.586 6.586 29 H 0.266 0.734 30 H 0.020 0.980 31 H 0.014 0.986 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.041 0.959 36 H 0.413 0.587 37 H 0.419 0.581 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.110 0.890 44 H 0.102 0.898 45 H 0.079 0.921 46 H 0.124 0.876 47 H 0.172 0.828 48 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.519 -26.649 -6.230 34.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.189 4.189 3 Si 0.767 3.233 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.175 1.175 7 C -0.566 4.566 8 H 0.060 0.940 9 C -0.051 4.051 10 C -0.133 4.133 11 C 0.024 3.976 12 N -0.381 5.381 13 C 0.396 3.604 14 O -0.514 6.514 15 N -0.382 5.382 16 C 0.046 3.954 17 H 0.108 0.892 18 C -0.152 4.152 19 C -0.164 4.164 20 C -0.170 4.170 21 C -0.036 4.036 22 N -0.316 5.316 23 C -0.006 4.006 24 C 0.295 3.705 25 O -0.438 6.438 26 O -0.324 6.324 27 C 0.297 3.703 28 O -0.465 6.465 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.032 0.968 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.249 0.751 37 H 0.265 0.735 38 H 0.120 0.880 39 H 0.106 0.894 40 H 0.121 0.879 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.129 0.871 44 H 0.121 0.879 45 H 0.097 0.903 46 H 0.142 0.858 47 H 0.189 0.811 48 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 22.529 -25.550 -5.985 34.586 hybrid contribution -0.966 1.641 -0.388 1.943 sum 21.563 -23.909 -6.373 32.822 Atomic orbital electron populations 1.70045 1.08036 1.28095 1.52719 1.25913 0.95559 1.03167 0.94291 0.85765 0.79524 0.78957 0.79084 1.19502 1.20728 1.17506 1.21434 0.91625 0.93393 1.50114 0.93962 1.19467 0.94323 0.94722 0.96576 1.21453 0.91371 0.98097 1.02418 1.21104 0.94403 0.81558 1.00569 1.44921 1.04719 1.09472 1.79030 1.16249 0.82880 0.83876 0.77442 1.90951 1.56252 1.45162 1.58992 1.45432 1.07294 1.05737 1.79704 1.21185 0.80638 1.01600 0.91971 0.89166 1.21640 1.01507 0.88269 1.03735 1.21218 0.98124 1.01121 0.95980 1.21821 1.04419 0.95748 0.94994 1.22603 0.85170 0.91840 1.04035 1.47618 1.28742 1.50709 1.04529 1.21225 1.00793 0.94382 0.84224 1.24800 0.78993 0.87397 0.79356 1.90823 1.34516 1.55729 1.62705 1.84453 1.67413 1.49167 1.31405 1.21447 0.83090 0.77016 0.88760 1.90686 1.28743 1.40275 1.86809 0.92466 0.96152 0.96789 0.91675 0.91005 0.92749 0.94012 0.75084 0.73550 0.87985 0.89441 0.87923 0.91030 0.90269 0.87147 0.87932 0.90285 0.85812 0.81090 0.71421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 2 C 0.01 0.46 5.47 84.65 0.46 0.92 16 3 Si 0.94 45.61 27.47 68.60 1.88 47.50 16 4 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 5 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 6 H -0.25 -11.56 6.54 99.48 0.65 -10.91 16 7 C -0.53 -30.32 9.66 25.60 0.25 -30.08 16 8 H 0.04 2.60 7.99 -2.91 -0.02 2.58 16 9 C -0.01 -0.61 4.04 29.85 0.12 -0.49 16 10 C -0.10 -3.57 5.27 30.60 0.16 -3.41 16 11 C 0.15 5.23 5.67 86.38 0.49 5.72 16 12 N -0.73 -20.24 5.56 -478.52 -2.66 -22.90 16 13 C 0.70 21.50 8.43 179.05 1.51 23.01 16 14 O -0.63 -27.26 16.05 -4.00 -0.06 -27.33 16 15 N -0.72 -13.93 3.10 -460.21 -1.43 -15.36 16 16 C 0.16 3.14 2.68 44.49 0.12 3.26 16 17 H 0.09 2.38 7.84 -2.39 -0.02 2.37 16 18 C -0.11 -0.97 5.57 30.22 0.17 -0.80 16 19 C -0.13 -0.34 5.20 29.80 0.15 -0.19 16 20 C -0.13 -0.33 5.73 30.19 0.17 -0.15 16 21 C 0.08 0.82 5.84 86.24 0.50 1.32 16 22 N -0.58 -10.25 1.94 -825.50 -1.60 -11.86 16 23 C 0.12 1.76 5.91 85.63 0.51 2.27 16 24 C 0.45 10.14 8.39 71.24 0.60 10.74 16 25 O -0.55 -18.31 17.19 21.98 0.38 -17.93 16 26 O -0.51 -8.40 13.42 -51.38 -0.69 -9.09 16 27 C 0.51 12.93 6.25 88.11 0.55 13.48 16 28 O -0.59 -20.56 16.60 -3.02 -0.05 -20.62 16 29 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 30 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 31 H 0.01 0.66 7.57 -2.39 -0.02 0.64 16 32 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.41 8.20 8.49 -92.71 -0.79 7.42 16 37 H 0.42 4.64 4.36 -92.71 -0.40 4.23 16 38 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.09 0.72 7.86 -2.39 -0.02 0.71 16 40 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 41 H 0.07 0.13 5.71 -2.38 -0.01 0.11 16 42 H 0.08 0.21 8.05 -2.38 -0.02 0.19 16 43 H 0.11 -0.21 8.14 -2.38 -0.02 -0.23 16 44 H 0.10 0.66 7.92 -2.38 -0.02 0.64 16 45 H 0.08 0.98 4.50 -2.39 -0.01 0.97 16 46 H 0.12 1.97 7.38 -2.39 -0.02 1.95 16 47 H 0.17 0.74 8.03 -2.39 -0.02 0.72 16 48 H 0.42 4.55 9.10 -74.05 -0.67 3.88 16 Total: -1.00 -96.67 387.47 0.93 -95.74 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -0.90 Total: 15.52 kcal Atomic # 6 Polarization: 19.84 SS G_CDS: 5.77 Total: 25.60 kcal Atomic # 7 Polarization: -104.00 SS G_CDS: -5.39 Total: -109.40 kcal Atomic # 8 Polarization: -74.54 SS G_CDS: -0.43 Total: -74.96 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.88 Total: 47.50 kcal Total: -96.67 0.93 -95.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605581584.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.147 kcal (2) G-P(sol) polarization free energy of solvation -96.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds