Wall clock time and date at job start Sat Apr 11 2020 06:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99828 * 2 1 4 4 H 1.48503 * 109.47402 * 269.99914 * 3 2 1 5 5 H 1.48502 * 109.47163 * 30.00031 * 3 2 1 6 6 H 1.48506 * 109.47187 * 150.00002 * 3 2 1 7 7 C 1.37876 * 120.00329 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99541 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00168 * 180.02562 * 7 2 1 10 10 N 1.46910 * 109.47168 * 175.09971 * 9 7 2 11 11 C 1.46898 * 110.99729 * 295.15247 * 10 9 7 12 12 C 1.53240 * 109.33575 * 187.25348 * 11 10 9 13 13 N 1.47083 * 108.51975 * 306.16757 * 12 11 10 14 14 C 1.34780 * 120.88046 * 231.18413 * 13 12 11 15 15 O 1.21591 * 119.99507 * 184.99142 * 14 13 12 16 16 N 1.34774 * 120.00055 * 4.99782 * 14 13 12 17 17 C 1.46502 * 119.99911 * 174.83487 * 16 14 13 18 18 C 1.52999 * 109.46791 * 180.02562 * 17 16 14 19 19 H 1.08995 * 110.43873 * 307.54105 * 18 17 16 20 20 C 1.54804 * 110.48837 * 70.23999 * 18 17 16 21 21 C 1.54998 * 102.09507 * 139.55329 * 20 18 17 22 22 O 1.44373 * 103.48872 * 322.97492 * 21 20 18 23 23 C 1.43748 * 106.97676 * 40.05893 * 22 21 20 24 24 H 1.09000 * 109.87858 * 92.91160 * 23 22 21 25 25 C 1.50697 * 109.87921 * 214.06057 * 23 22 21 26 26 O 1.20826 * 120.00321 * 3.54751 * 25 23 22 27 27 O 1.34234 * 120.00292 * 183.54397 * 25 23 22 28 28 C 1.47082 * 118.23657 * 51.46528 * 13 12 11 29 29 C 1.46897 * 110.99781 * 59.45444 * 10 9 7 30 30 H 0.97001 * 120.00010 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.47152 * 55.10089 * 9 7 2 32 32 H 1.09003 * 109.47029 * 295.09850 * 9 7 2 33 33 H 1.09002 * 109.48850 * 67.29455 * 11 10 9 34 34 H 1.08995 * 109.51815 * 307.22551 * 11 10 9 35 35 H 1.08999 * 109.62616 * 186.46089 * 12 11 10 36 36 H 1.08991 * 109.79098 * 65.97351 * 12 11 10 37 37 H 0.97000 * 119.99760 * 354.84213 * 16 14 13 38 38 H 1.09006 * 109.46561 * 60.00130 * 17 16 14 39 39 H 1.08995 * 109.47474 * 300.00176 * 17 16 14 40 40 H 1.09004 * 110.90286 * 257.75265 * 20 18 17 41 41 H 1.09002 * 110.91036 * 21.31950 * 20 18 17 42 42 H 1.09002 * 110.61616 * 204.47320 * 21 20 18 43 43 H 1.08999 * 110.61849 * 81.47647 * 21 20 18 44 44 H 0.96698 * 117.00016 * 180.02562 * 27 25 23 45 45 H 1.08995 * 109.62891 * 68.24864 * 28 13 12 46 46 H 1.08993 * 109.62670 * 188.83025 * 28 13 12 47 47 H 1.09000 * 109.49360 * 292.70728 * 29 10 9 48 48 H 1.09006 * 109.49418 * 52.78945 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0013 -2.5739 0.1199 11 6 3.6267 -3.1556 1.4158 12 6 4.3056 -4.5202 1.5746 13 7 3.9746 -5.3459 0.4032 14 6 3.4830 -6.5920 0.5519 15 8 3.3003 -7.2938 -0.4241 16 7 3.1939 -7.0600 1.7822 17 6 2.5547 -8.3693 1.9363 18 6 2.3377 -8.6589 3.4229 19 1 3.2691 -8.5340 3.9750 20 6 1.2350 -7.7376 3.9990 21 6 0.4551 -8.7049 4.9257 22 8 0.4729 -9.9533 4.2008 23 6 1.7812 -10.0824 3.6193 24 1 2.4308 -10.6451 4.2897 25 6 1.6836 -10.7827 2.2885 26 8 0.6018 -11.0820 1.8411 27 8 2.7984 -11.0739 1.5999 28 6 4.2003 -4.7779 -0.9346 29 6 3.5200 -3.4010 -0.9946 30 1 -0.4850 0.8401 -0.0004 31 1 3.8746 -0.6058 0.8440 32 1 3.8752 -0.7582 -0.9295 33 1 2.5447 -3.2804 1.4592 34 1 3.9491 -2.4933 2.2191 35 1 3.9424 -5.0067 2.4799 36 1 5.3859 -4.3899 1.6373 37 1 3.4088 -6.5300 2.5656 38 1 3.1951 -9.1390 1.5054 39 1 1.5934 -8.3670 1.4228 40 1 1.6719 -6.9188 4.5707 41 1 0.5928 -7.3562 3.2052 42 1 -0.5685 -8.3582 5.0680 43 1 0.9625 -8.8105 5.8845 44 1 2.6854 -11.5231 0.7511 45 1 5.2705 -4.6690 -1.1104 46 1 3.7675 -5.4348 -1.6890 47 1 2.4396 -3.5223 -0.9175 48 1 3.7655 -2.9164 -1.9397 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184915.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:44 Heat of formation + Delta-G solvation = -134.893368 kcal Electronic energy + Delta-G solvation = -31011.469630 eV Core-core repulsion = 26681.398950 eV Total energy + Delta-G solvation = -4330.070680 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.34398 -40.14612 -39.23762 -37.77028 -36.46355 -35.38171 -34.50440 -32.61164 -32.17577 -30.75371 -30.53204 -28.67517 -26.59370 -25.28212 -24.11758 -23.17798 -22.33779 -22.11787 -20.87638 -20.61402 -19.28455 -18.39823 -17.98786 -17.57385 -17.04838 -16.86193 -16.22814 -15.94504 -15.56540 -15.40768 -14.97150 -14.74771 -14.55399 -14.45272 -14.15117 -14.09129 -13.95446 -13.51359 -13.28275 -12.92727 -12.49680 -12.45758 -12.34839 -12.22579 -12.05942 -11.77898 -11.49491 -11.40133 -11.32507 -11.26562 -11.04825 -10.86127 -10.68325 -10.52424 -10.38156 -10.23346 -9.99282 -9.92791 -9.58523 -9.14747 -8.67616 -8.34972 -7.34394 -6.17652 -4.18959 1.82893 2.29645 2.64531 3.22007 3.29953 3.31803 3.32984 3.47572 3.75301 4.04004 4.13836 4.32205 4.33723 4.62958 4.66283 4.74205 4.77525 4.84883 5.01647 5.14296 5.20007 5.29171 5.30206 5.39192 5.43412 5.50583 5.63342 5.65190 5.67706 5.84417 5.91167 6.06052 6.15782 6.22146 6.29841 6.39494 6.54308 6.60736 6.70124 6.84810 6.96680 7.03794 7.45124 7.56197 7.88244 7.93411 8.02463 8.35682 8.68617 8.83983 9.44215 10.95082 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015851 B = 0.002597 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.998993 B =10780.123676 C =11657.339466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.153 3.847 10 N -0.533 5.533 11 C 0.048 3.952 12 C 0.117 3.883 13 N -0.623 5.623 14 C 0.709 3.291 15 O -0.595 6.595 16 N -0.746 5.746 17 C 0.128 3.872 18 C -0.124 4.124 19 H 0.108 0.892 20 C -0.155 4.155 21 C 0.047 3.953 22 O -0.347 6.347 23 C 0.098 3.902 24 H 0.114 0.886 25 C 0.477 3.523 26 O -0.490 6.490 27 O -0.510 6.510 28 C 0.134 3.866 29 C 0.047 3.953 30 H 0.264 0.736 31 H 0.031 0.969 32 H 0.027 0.973 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.395 0.605 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.070 0.930 44 H 0.416 0.584 45 H 0.066 0.934 46 H 0.088 0.912 47 H 0.049 0.951 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.041 -18.074 11.146 23.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.593 4.593 8 H 0.092 0.908 9 C 0.027 3.973 10 N -0.256 5.256 11 C -0.082 4.082 12 C -0.007 4.007 13 N -0.360 5.360 14 C 0.411 3.589 15 O -0.474 6.474 16 N -0.405 5.405 17 C 0.003 3.997 18 C -0.143 4.143 19 H 0.126 0.874 20 C -0.193 4.193 21 C -0.029 4.029 22 O -0.266 6.266 23 C 0.038 3.962 24 H 0.132 0.868 25 C 0.317 3.683 26 O -0.375 6.375 27 O -0.324 6.324 28 C 0.011 3.989 29 C -0.082 4.082 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.232 0.768 38 H 0.111 0.889 39 H 0.083 0.917 40 H 0.111 0.889 41 H 0.107 0.893 42 H 0.122 0.878 43 H 0.088 0.912 44 H 0.277 0.723 45 H 0.084 0.916 46 H 0.107 0.893 47 H 0.068 0.932 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.799 -18.495 10.619 23.071 hybrid contribution -0.544 1.184 -0.041 1.304 sum 8.254 -17.311 10.578 21.902 Atomic orbital electron populations 1.69930 1.06406 1.27091 1.50075 1.24985 0.94696 0.99267 0.94079 0.86794 0.80334 0.83502 0.78721 1.20140 1.21312 1.18775 1.21678 0.90630 0.94680 1.52335 0.90832 1.20221 0.94672 0.85367 0.97067 1.62406 1.58503 1.03844 1.00894 1.22243 0.98952 0.93395 0.93575 1.21815 1.00307 0.91705 0.86842 1.47334 1.67332 1.13035 1.08305 1.15767 0.78141 0.81705 0.83314 1.90890 1.60822 1.57522 1.38144 1.45102 1.67078 1.21065 1.07247 1.21648 0.98903 0.85638 0.93465 1.22774 1.00832 0.92781 0.97897 0.87367 1.23355 0.97067 0.98448 1.00391 1.23721 1.02474 0.82201 0.94545 1.89013 1.29163 1.40285 1.68123 1.22108 0.87627 0.95960 0.90539 0.86817 1.23045 0.81977 0.76583 0.86716 1.90770 1.29363 1.48794 1.68596 1.84504 1.37167 1.73004 1.37762 1.21801 1.00276 0.94203 0.82592 1.22406 0.98545 0.91781 0.95478 0.92605 0.95057 0.95544 0.93317 0.90465 0.91369 0.91034 0.76825 0.88874 0.91668 0.88881 0.89283 0.87793 0.91154 0.72317 0.91560 0.89339 0.93240 0.90292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.78 13.96 55.43 0.77 -26.01 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 20.67 27.57 -169.99 -4.69 15.99 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.26 -5.88 6.40 56.52 0.36 -5.52 16 7 C -0.55 -14.85 8.32 -34.44 -0.29 -15.14 16 8 H 0.07 2.18 6.12 -52.49 -0.32 1.86 16 9 C 0.15 3.47 4.21 -4.97 -0.02 3.45 16 10 N -0.53 -10.22 4.83 -235.46 -1.14 -11.36 16 11 C 0.05 0.81 5.25 -3.70 -0.02 0.79 16 12 C 0.12 1.51 6.59 -3.60 -0.02 1.49 16 13 N -0.62 -9.47 3.00 -177.91 -0.53 -10.00 16 14 C 0.71 11.20 8.31 -86.92 -0.72 10.48 16 15 O -0.60 -11.51 15.83 5.29 0.08 -11.42 16 16 N -0.75 -8.65 5.36 -65.22 -0.35 -8.99 16 17 C 0.13 1.36 3.84 -4.04 -0.02 1.35 16 18 C -0.12 -0.88 3.07 -89.10 -0.27 -1.16 16 19 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 20 C -0.16 -1.09 6.56 -24.73 -0.16 -1.25 16 21 C 0.05 0.32 7.72 38.21 0.29 0.61 16 22 O -0.35 -3.54 10.74 -54.84 -0.59 -4.13 16 23 C 0.10 0.80 3.96 -27.31 -0.11 0.69 16 24 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 25 C 0.48 4.93 6.09 36.00 0.22 5.15 16 26 O -0.49 -7.07 17.28 -25.38 -0.44 -7.51 16 27 O -0.51 -3.95 11.11 -39.27 -0.44 -4.39 16 28 C 0.13 2.15 6.61 -3.36 -0.02 2.13 16 29 C 0.05 0.88 5.17 -3.46 -0.02 0.86 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.03 0.71 6.78 -51.93 -0.35 0.36 16 32 H 0.03 0.60 7.81 -51.93 -0.41 0.20 16 33 H 0.05 0.97 7.11 -51.93 -0.37 0.60 16 34 H 0.08 1.23 8.06 -51.93 -0.42 0.81 16 35 H 0.07 0.67 5.63 -51.93 -0.29 0.37 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.40 3.55 5.94 -40.82 -0.24 3.31 16 38 H 0.09 1.03 5.49 -51.93 -0.29 0.75 16 39 H 0.07 0.88 7.69 -51.93 -0.40 0.48 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.83 7.77 -51.93 -0.40 0.43 16 42 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.42 1.89 9.10 45.56 0.41 2.31 16 45 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.09 1.48 7.09 -51.93 -0.37 1.11 16 47 H 0.05 1.08 6.62 -51.93 -0.34 0.74 16 48 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 LS Contribution 376.09 15.07 5.67 5.67 Total: -1.00 -36.64 376.09 -9.24 -45.89 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.34 Total: 4.91 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: -1.26 Total: 11.37 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: -1.25 Total: -56.37 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -1.38 Total: -27.45 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.69 Total: 15.99 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.64 -9.24 -45.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184915.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.007 kcal (2) G-P(sol) polarization free energy of solvation -36.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds