Wall clock time and date at job start Sat Apr 11 2020 06:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99828 * 2 1 4 4 H 1.48503 * 109.47402 * 269.99914 * 3 2 1 5 5 H 1.48502 * 109.47163 * 30.00031 * 3 2 1 6 6 H 1.48506 * 109.47187 * 150.00002 * 3 2 1 7 7 C 1.37876 * 120.00329 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99541 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00168 * 180.02562 * 7 2 1 10 10 N 1.46910 * 109.47168 * 175.09971 * 9 7 2 11 11 C 1.46898 * 110.99729 * 295.15247 * 10 9 7 12 12 C 1.53240 * 109.33575 * 187.25348 * 11 10 9 13 13 N 1.47083 * 108.51975 * 306.16757 * 12 11 10 14 14 C 1.34780 * 120.88046 * 231.18413 * 13 12 11 15 15 O 1.21591 * 119.99507 * 184.99142 * 14 13 12 16 16 N 1.34774 * 120.00055 * 4.99782 * 14 13 12 17 17 C 1.46502 * 119.99911 * 174.83487 * 16 14 13 18 18 C 1.52999 * 109.46791 * 180.02562 * 17 16 14 19 19 H 1.08995 * 110.43873 * 307.54105 * 18 17 16 20 20 C 1.54804 * 110.48837 * 70.23999 * 18 17 16 21 21 C 1.54998 * 102.09507 * 139.55329 * 20 18 17 22 22 O 1.44373 * 103.48872 * 322.97492 * 21 20 18 23 23 C 1.43748 * 106.97676 * 40.05893 * 22 21 20 24 24 H 1.09000 * 109.87858 * 92.91160 * 23 22 21 25 25 C 1.50697 * 109.87921 * 214.06057 * 23 22 21 26 26 O 1.20826 * 120.00321 * 3.54751 * 25 23 22 27 27 O 1.34234 * 120.00292 * 183.54397 * 25 23 22 28 28 C 1.47082 * 118.23657 * 51.46528 * 13 12 11 29 29 C 1.46897 * 110.99781 * 59.45444 * 10 9 7 30 30 H 0.97001 * 120.00010 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.47152 * 55.10089 * 9 7 2 32 32 H 1.09003 * 109.47029 * 295.09850 * 9 7 2 33 33 H 1.09002 * 109.48850 * 67.29455 * 11 10 9 34 34 H 1.08995 * 109.51815 * 307.22551 * 11 10 9 35 35 H 1.08999 * 109.62616 * 186.46089 * 12 11 10 36 36 H 1.08991 * 109.79098 * 65.97351 * 12 11 10 37 37 H 0.97000 * 119.99760 * 354.84213 * 16 14 13 38 38 H 1.09006 * 109.46561 * 60.00130 * 17 16 14 39 39 H 1.08995 * 109.47474 * 300.00176 * 17 16 14 40 40 H 1.09004 * 110.90286 * 257.75265 * 20 18 17 41 41 H 1.09002 * 110.91036 * 21.31950 * 20 18 17 42 42 H 1.09002 * 110.61616 * 204.47320 * 21 20 18 43 43 H 1.08999 * 110.61849 * 81.47647 * 21 20 18 44 44 H 0.96698 * 117.00016 * 180.02562 * 27 25 23 45 45 H 1.08995 * 109.62891 * 68.24864 * 28 13 12 46 46 H 1.08993 * 109.62670 * 188.83025 * 28 13 12 47 47 H 1.09000 * 109.49360 * 292.70728 * 29 10 9 48 48 H 1.09006 * 109.49418 * 52.78945 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0013 -2.5739 0.1199 11 6 3.6267 -3.1556 1.4158 12 6 4.3056 -4.5202 1.5746 13 7 3.9746 -5.3459 0.4032 14 6 3.4830 -6.5920 0.5519 15 8 3.3003 -7.2938 -0.4241 16 7 3.1939 -7.0600 1.7822 17 6 2.5547 -8.3693 1.9363 18 6 2.3377 -8.6589 3.4229 19 1 3.2691 -8.5340 3.9750 20 6 1.2350 -7.7376 3.9990 21 6 0.4551 -8.7049 4.9257 22 8 0.4729 -9.9533 4.2008 23 6 1.7812 -10.0824 3.6193 24 1 2.4308 -10.6451 4.2897 25 6 1.6836 -10.7827 2.2885 26 8 0.6018 -11.0820 1.8411 27 8 2.7984 -11.0739 1.5999 28 6 4.2003 -4.7779 -0.9346 29 6 3.5200 -3.4010 -0.9946 30 1 -0.4850 0.8401 -0.0004 31 1 3.8746 -0.6058 0.8440 32 1 3.8752 -0.7582 -0.9295 33 1 2.5447 -3.2804 1.4592 34 1 3.9491 -2.4933 2.2191 35 1 3.9424 -5.0067 2.4799 36 1 5.3859 -4.3899 1.6373 37 1 3.4088 -6.5300 2.5656 38 1 3.1951 -9.1390 1.5054 39 1 1.5934 -8.3670 1.4228 40 1 1.6719 -6.9188 4.5707 41 1 0.5928 -7.3562 3.2052 42 1 -0.5685 -8.3582 5.0680 43 1 0.9625 -8.8105 5.8845 44 1 2.6854 -11.5231 0.7511 45 1 5.2705 -4.6690 -1.1104 46 1 3.7675 -5.4348 -1.6890 47 1 2.4396 -3.5223 -0.9175 48 1 3.7655 -2.9164 -1.9397 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608184915.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:43 Heat of formation + Delta-G solvation = -165.480772 kcal Electronic energy + Delta-G solvation = -31012.795999 eV Core-core repulsion = 26681.398950 eV Total energy + Delta-G solvation = -4331.397049 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.10955 -41.34740 -39.95978 -39.18422 -37.29649 -36.35945 -36.02623 -34.37303 -33.30868 -31.90852 -31.27511 -30.33344 -27.78394 -26.67427 -24.86122 -24.46897 -23.83456 -22.89504 -22.07173 -21.60895 -20.58274 -19.42973 -19.02291 -18.75743 -18.37052 -17.79734 -17.18711 -16.90159 -16.63546 -16.47278 -16.21802 -16.03308 -15.84164 -15.61557 -15.37689 -15.31257 -15.19204 -14.59588 -14.42562 -14.20061 -13.96872 -13.80521 -13.60017 -13.06634 -13.02946 -12.90853 -12.75961 -12.47303 -12.44056 -12.26020 -12.20130 -12.16812 -12.02300 -11.98623 -11.72498 -11.63989 -11.57538 -11.25249 -10.84384 -10.80564 -10.28721 -9.59126 -9.01859 -8.32258 -6.38927 1.04417 1.37994 1.38322 1.50099 1.53180 1.67952 2.08970 2.33733 2.75629 2.90121 3.02989 3.24294 3.36847 3.48935 3.74604 3.98643 4.06780 4.08775 4.09839 4.16624 4.20228 4.24897 4.36257 4.41153 4.52386 4.59633 4.71034 4.74898 4.76415 4.83726 4.85324 4.89607 5.00367 5.06711 5.07456 5.09848 5.20268 5.38070 5.44646 5.47704 5.49270 5.68107 5.87351 6.07799 6.28427 6.34751 6.68601 6.86245 6.90849 7.28706 7.48393 8.84204 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015851 B = 0.002597 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.998993 B =10780.123676 C =11657.339466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.008 3.992 3 Si 0.953 3.047 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.236 1.236 7 C -0.551 4.551 8 H 0.026 0.974 9 C 0.159 3.841 10 N -0.522 5.522 11 C 0.046 3.954 12 C 0.125 3.875 13 N -0.628 5.628 14 C 0.702 3.298 15 O -0.637 6.637 16 N -0.727 5.727 17 C 0.129 3.871 18 C -0.110 4.110 19 H 0.152 0.848 20 C -0.156 4.156 21 C 0.044 3.956 22 O -0.382 6.382 23 C 0.096 3.904 24 H 0.155 0.845 25 C 0.475 3.525 26 O -0.544 6.544 27 O -0.501 6.501 28 C 0.145 3.855 29 C 0.053 3.947 30 H 0.265 0.735 31 H 0.043 0.957 32 H 0.030 0.970 33 H 0.007 0.993 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.411 0.589 38 H 0.092 0.908 39 H 0.027 0.973 40 H 0.121 0.879 41 H 0.054 0.946 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.428 0.572 45 H 0.092 0.908 46 H 0.076 0.924 47 H 0.002 0.998 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.860 -17.569 13.736 25.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.776 3.224 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.159 1.159 7 C -0.590 4.590 8 H 0.044 0.956 9 C 0.032 3.968 10 N -0.245 5.245 11 C -0.083 4.083 12 C 0.002 3.998 13 N -0.364 5.364 14 C 0.403 3.597 15 O -0.519 6.519 16 N -0.386 5.386 17 C 0.005 3.995 18 C -0.129 4.129 19 H 0.170 0.830 20 C -0.193 4.193 21 C -0.031 4.031 22 O -0.301 6.301 23 C 0.036 3.964 24 H 0.172 0.828 25 C 0.318 3.682 26 O -0.433 6.433 27 O -0.316 6.316 28 C 0.021 3.979 29 C -0.076 4.076 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.026 0.974 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.251 0.749 38 H 0.110 0.890 39 H 0.045 0.955 40 H 0.140 0.860 41 H 0.073 0.927 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.291 0.709 45 H 0.110 0.890 46 H 0.094 0.906 47 H 0.021 0.979 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.668 -18.002 13.256 25.696 hybrid contribution -1.804 0.939 -0.889 2.219 sum 10.864 -17.064 12.367 23.709 Atomic orbital electron populations 1.70104 1.08620 1.28204 1.52195 1.25999 0.95498 1.03719 0.93745 0.85624 0.79727 0.77848 0.79157 1.19549 1.21346 1.15892 1.21913 0.93036 0.92849 1.51187 0.95557 1.20111 0.91411 0.87786 0.97524 1.62453 1.57417 1.02568 1.02056 1.22361 0.97005 0.96209 0.92772 1.21947 1.01556 0.89036 0.87215 1.47400 1.67220 1.13148 1.08670 1.16013 0.77971 0.81700 0.83996 1.90860 1.62405 1.58724 1.39880 1.44924 1.65854 1.21414 1.06401 1.21661 0.96772 0.85019 0.96039 1.22811 1.02640 0.92101 0.95356 0.82989 1.23367 0.96759 0.99370 0.99836 1.23920 1.02849 0.80869 0.95440 1.88988 1.30608 1.41732 1.68776 1.22456 0.87596 0.96588 0.89728 0.82816 1.23741 0.81506 0.75555 0.87404 1.90747 1.31295 1.51251 1.70026 1.84476 1.36026 1.72671 1.38429 1.21624 1.01127 0.91926 0.83221 1.22341 0.95971 0.93631 0.95676 0.92588 0.93935 0.95143 0.97434 0.88803 0.87722 0.88219 0.74936 0.89019 0.95504 0.86034 0.92701 0.88230 0.87778 0.70925 0.88952 0.90567 0.97924 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.85 13.96 21.45 0.30 -58.56 16 2 C 0.01 0.46 5.47 84.65 0.46 0.93 16 3 Si 0.95 42.21 27.57 68.60 1.89 44.10 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.24 -9.34 6.40 99.48 0.64 -8.70 16 7 C -0.55 -30.35 8.32 25.60 0.21 -30.14 16 8 H 0.03 1.66 6.12 -2.91 -0.02 1.64 16 9 C 0.16 7.03 4.21 85.55 0.36 7.39 16 10 N -0.52 -19.47 4.83 -898.85 -4.34 -23.81 16 11 C 0.05 1.48 5.25 86.38 0.45 1.94 16 12 C 0.12 2.82 6.59 86.35 0.57 3.39 16 13 N -0.63 -18.24 3.00 -835.04 -2.51 -20.75 16 14 C 0.70 21.71 8.31 179.05 1.49 23.20 16 15 O -0.64 -25.09 15.83 -4.00 -0.06 -25.15 16 16 N -0.73 -15.58 5.36 -478.53 -2.57 -18.14 16 17 C 0.13 2.65 3.84 86.38 0.33 2.99 16 18 C -0.11 -1.27 3.07 -9.81 -0.03 -1.30 16 19 H 0.15 0.53 8.14 -2.39 -0.02 0.51 16 20 C -0.16 -1.91 6.56 31.89 0.21 -1.70 16 21 C 0.04 0.52 7.72 72.67 0.56 1.09 16 22 O -0.38 -7.46 10.74 -130.23 -1.40 -8.86 16 23 C 0.10 1.37 3.96 30.22 0.12 1.49 16 24 H 0.15 0.99 8.14 -2.39 -0.02 0.98 16 25 C 0.48 9.82 6.09 71.23 0.43 10.25 16 26 O -0.54 -16.61 17.28 28.31 0.49 -16.12 16 27 O -0.50 -7.43 11.11 -51.46 -0.57 -8.00 16 28 C 0.14 4.54 6.61 86.50 0.57 5.11 16 29 C 0.05 2.02 5.17 86.54 0.45 2.47 16 30 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 31 H 0.04 1.81 6.78 -2.39 -0.02 1.79 16 32 H 0.03 1.33 7.81 -2.39 -0.02 1.32 16 33 H 0.01 0.30 7.11 -2.39 -0.02 0.28 16 34 H 0.09 2.73 8.06 -2.39 -0.02 2.71 16 35 H 0.10 1.59 5.63 -2.39 -0.01 1.58 16 36 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.41 5.93 5.94 -92.71 -0.55 5.38 16 38 H 0.09 1.94 5.49 -2.38 -0.01 1.93 16 39 H 0.03 0.76 7.69 -2.39 -0.02 0.74 16 40 H 0.12 0.78 8.14 -2.38 -0.02 0.77 16 41 H 0.05 1.06 7.77 -2.39 -0.02 1.04 16 42 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.43 3.92 9.10 -74.06 -0.67 3.25 16 45 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 46 H 0.08 2.60 7.09 -2.39 -0.02 2.58 16 47 H 0.00 0.11 6.62 -2.39 -0.02 0.10 16 48 H 0.08 2.98 8.11 -2.38 -0.02 2.96 16 Total: -1.00 -86.82 376.09 -2.86 -89.68 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -0.28 Total: 18.49 kcal Atomic # 6 Polarization: 20.92 SS G_CDS: 6.19 Total: 27.11 kcal Atomic # 7 Polarization: -112.14 SS G_CDS: -9.11 Total: -121.26 kcal Atomic # 8 Polarization: -56.59 SS G_CDS: -1.54 Total: -58.13 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.89 Total: 44.10 kcal Total: -86.82 -2.86 -89.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184915.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.799 kcal (2) G-P(sol) polarization free energy of solvation -86.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds