Wall clock time and date at job start Sat Apr 11 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47240 * 264.72228 * 3 2 1 5 5 H 1.48503 * 109.46995 * 24.72328 * 3 2 1 6 6 H 1.48497 * 109.46968 * 144.72236 * 3 2 1 7 7 C 1.37879 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99899 * 7.04667 * 7 2 1 9 9 C 1.50696 * 120.00055 * 187.04965 * 7 2 1 10 10 O 1.42898 * 110.88907 * 61.97174 * 9 7 2 11 11 C 1.55156 * 111.00380 * 298.08413 * 9 7 2 12 12 C 1.54325 * 102.94334 * 206.38590 * 11 9 7 13 13 N 1.47020 * 107.26925 * 22.19688 * 12 11 9 14 14 C 1.34773 * 125.64486 * 181.01160 * 13 12 11 15 15 O 1.21587 * 119.99956 * 180.02562 * 14 13 12 16 16 N 1.34779 * 120.00422 * 0.02684 * 14 13 12 17 17 C 1.46496 * 119.99950 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.47106 * 179.97438 * 17 16 14 19 19 C 1.50699 * 109.47610 * 179.97438 * 18 17 16 20 20 O 1.21278 * 119.99576 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00144 * 180.02562 * 19 18 17 22 22 C 1.47156 * 120.98437 * 359.71656 * 21 19 18 23 23 C 1.53707 * 108.16373 * 129.43189 * 22 21 19 24 24 O 1.42967 * 109.14419 * 52.53946 * 23 22 21 25 25 C 1.42962 * 114.16796 * 297.28718 * 24 23 22 26 26 C 1.47149 * 120.98193 * 180.02562 * 21 19 18 27 27 C 1.47417 * 108.70555 * 1.05657 * 13 12 11 28 28 H 0.97008 * 119.99397 * 359.97438 * 1 2 3 29 29 H 0.96695 * 113.99756 * 56.11352 * 10 9 7 30 30 H 1.09005 * 110.71939 * 88.02227 * 11 9 7 31 31 H 1.08994 * 110.87632 * 324.82588 * 11 9 7 32 32 H 1.09002 * 109.87834 * 141.61145 * 12 11 9 33 33 H 1.09002 * 109.88189 * 262.77633 * 12 11 9 34 34 H 0.96997 * 119.99783 * 359.97438 * 16 14 13 35 35 H 1.09001 * 109.47388 * 299.99181 * 17 16 14 36 36 H 1.08996 * 109.47372 * 60.00122 * 17 16 14 37 37 H 1.09007 * 109.46806 * 300.00121 * 18 17 16 38 38 H 1.09001 * 109.46870 * 59.99187 * 18 17 16 39 39 H 1.08998 * 109.67963 * 249.21890 * 22 21 19 40 40 H 1.09001 * 109.67978 * 9.76333 * 22 21 19 41 41 H 1.09006 * 109.65883 * 292.58077 * 23 22 21 42 42 H 1.08996 * 109.48682 * 172.40121 * 23 22 21 43 43 H 1.09001 * 109.51429 * 302.65943 * 25 24 23 44 44 H 1.08993 * 109.55388 * 182.53148 * 25 24 23 45 45 H 1.08999 * 109.67995 * 350.23960 * 26 21 19 46 46 H 1.09000 * 109.68223 * 110.75034 * 26 21 19 47 47 H 1.08999 * 110.37035 * 217.02934 * 27 13 12 48 48 H 1.09003 * 110.46209 * 94.75840 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6083 1.9820 -1.3941 5 1 1.3953 2.6823 0.5856 6 1 3.4865 1.4748 0.8086 7 6 2.0045 -1.1941 -0.0005 8 1 1.4706 -2.1258 -0.1157 9 6 3.5029 -1.1991 0.1596 10 8 3.8822 -0.6475 1.4221 11 6 4.1895 -0.4414 -1.0073 12 6 5.5840 -1.0992 -1.0736 13 7 5.4722 -2.4234 -0.4448 14 6 6.4790 -3.3053 -0.2866 15 8 6.2705 -4.3763 0.2499 16 7 7.7171 -3.0000 -0.7230 17 6 8.8114 -3.9589 -0.5514 18 6 10.1002 -3.3706 -1.1292 19 6 11.2261 -4.3566 -0.9522 20 8 11.0180 -5.4249 -0.4171 21 7 12.4641 -4.0512 -1.3885 22 6 12.7395 -2.7640 -2.0462 23 6 13.9583 -2.1264 -1.3601 24 8 15.0317 -3.0706 -1.3392 25 6 14.7560 -4.2537 -0.5855 26 6 13.5790 -4.9980 -1.2274 27 6 4.0763 -2.6274 -0.0170 28 1 -0.4850 0.8402 0.0004 29 1 3.4778 -1.0888 2.1815 30 1 4.2748 0.6212 -0.7799 31 1 3.6472 -0.5922 -1.9407 32 1 5.8937 -1.2074 -2.1130 33 1 6.3071 -0.4907 -0.5305 34 1 7.8835 -2.1458 -1.1513 35 1 8.9500 -4.1660 0.5097 36 1 8.5688 -4.8843 -1.0737 37 1 9.9614 -3.1636 -2.1904 38 1 10.3429 -2.4449 -0.6073 39 1 12.9538 -2.9296 -3.1020 40 1 11.8750 -2.1078 -1.9452 41 1 13.6996 -1.8467 -0.3388 42 1 14.2646 -1.2392 -1.9142 43 1 14.5001 -3.9817 0.4385 44 1 15.6355 -4.8974 -0.5823 45 1 13.2707 -5.8220 -0.5839 46 1 13.8759 -5.3848 -2.2022 47 1 4.0444 -3.1686 0.9286 48 1 3.5185 -3.1682 -0.7816 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645858679.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:03 Heat of formation + Delta-G solvation = -165.978022 kcal Electronic energy + Delta-G solvation = -30056.053652 eV Core-core repulsion = 25724.635041 eV Total energy + Delta-G solvation = -4331.418611 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.55750 -41.22159 -39.52221 -39.20775 -36.27751 -36.13599 -35.86816 -34.49142 -32.95434 -32.18612 -31.24214 -29.92015 -28.86604 -27.16174 -25.49496 -24.63733 -23.90403 -22.77712 -21.65071 -21.27225 -20.21269 -19.48885 -18.85801 -18.53543 -17.46642 -17.35440 -17.19135 -16.89524 -16.73644 -16.63200 -16.43321 -16.10469 -15.99891 -15.52258 -15.37682 -15.07750 -14.85068 -14.69483 -14.58896 -14.20931 -14.07223 -13.79109 -13.56183 -13.24382 -13.07712 -13.00936 -12.79504 -12.64701 -12.52057 -12.36114 -12.34444 -12.18639 -11.79614 -11.76704 -11.40523 -11.25398 -10.98562 -10.93035 -10.74687 -10.41064 -10.27108 -9.66339 -9.41573 -8.34964 -6.50571 1.39328 1.43221 1.47531 1.49140 1.68065 1.89184 2.10163 2.41204 2.86891 2.97791 3.00890 3.46832 3.56805 3.67130 3.76397 3.83737 3.99220 4.01000 4.05506 4.10681 4.21564 4.24359 4.28526 4.37445 4.45455 4.54969 4.61054 4.65530 4.75288 4.79517 4.81968 4.84690 4.86077 4.94888 4.96999 5.11419 5.16217 5.33083 5.40205 5.44313 5.52547 6.07003 6.09649 6.10922 6.21615 6.60585 6.98542 7.00647 7.12414 7.29729 7.52398 8.79200 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.024849 B = 0.002003 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.536288 B =13974.468576 C =14740.726572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.036 3.964 3 Si 0.942 3.058 4 H -0.260 1.260 5 H -0.310 1.310 6 H -0.219 1.219 7 C -0.554 4.554 8 H 0.037 0.963 9 C 0.215 3.785 10 O -0.574 6.574 11 C -0.130 4.130 12 C 0.109 3.891 13 N -0.628 5.628 14 C 0.714 3.286 15 O -0.643 6.643 16 N -0.725 5.725 17 C 0.159 3.841 18 C -0.137 4.137 19 C 0.518 3.482 20 O -0.584 6.584 21 N -0.617 5.617 22 C 0.067 3.933 23 C 0.040 3.960 24 O -0.397 6.397 25 C 0.053 3.947 26 C 0.073 3.927 27 C 0.119 3.881 28 H 0.268 0.732 29 H 0.374 0.626 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.415 0.585 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.091 0.909 40 H 0.126 0.874 41 H 0.058 0.942 42 H 0.131 0.869 43 H 0.052 0.948 44 H 0.122 0.878 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.052 0.948 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.470 1.505 -7.603 33.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.186 1.186 5 H -0.239 1.239 6 H -0.142 1.142 7 C -0.591 4.591 8 H 0.055 0.945 9 C 0.175 3.825 10 O -0.381 6.381 11 C -0.167 4.167 12 C -0.013 4.013 13 N -0.365 5.365 14 C 0.416 3.584 15 O -0.525 6.525 16 N -0.383 5.383 17 C 0.034 3.966 18 C -0.176 4.176 19 C 0.307 3.693 20 O -0.464 6.464 21 N -0.351 5.351 22 C -0.055 4.055 23 C -0.037 4.037 24 O -0.315 6.315 25 C -0.024 4.024 26 C -0.050 4.050 27 C -0.005 4.005 28 H 0.077 0.923 29 H 0.222 0.778 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.252 0.748 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.155 0.845 38 H 0.153 0.847 39 H 0.109 0.891 40 H 0.144 0.856 41 H 0.076 0.924 42 H 0.148 0.852 43 H 0.070 0.930 44 H 0.140 0.860 45 H 0.103 0.897 46 H 0.102 0.898 47 H 0.070 0.930 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 32.691 0.633 -7.424 33.529 hybrid contribution -1.227 0.030 0.547 1.343 sum 31.464 0.663 -6.877 32.214 Atomic orbital electron populations 1.70081 1.08609 1.28575 1.50024 1.25815 0.95170 1.03393 0.92124 0.86035 0.80238 0.77185 0.79814 1.18563 1.23863 1.14179 1.21345 0.91301 0.93727 1.52757 0.94507 1.19969 0.91209 0.88399 0.82959 1.86372 1.73532 1.61912 1.16266 1.22941 0.95201 0.99901 0.98707 1.22150 0.97969 0.82351 0.98795 1.47580 1.08366 1.17923 1.62605 1.15610 0.80839 0.82598 0.79335 1.90884 1.83744 1.25855 1.52045 1.44740 1.06162 1.22161 1.65195 1.20688 0.84362 0.91099 1.00458 1.21786 0.90185 0.99327 1.06330 1.20864 0.84077 0.87466 0.76906 1.90750 1.83449 1.27100 1.45084 1.48263 1.08115 1.19405 1.59314 1.22880 1.00845 0.83839 0.97933 1.23293 0.86640 0.92384 1.01337 1.87964 1.40167 1.30046 1.73369 1.23006 0.98328 0.87068 0.94030 1.22349 0.86767 0.93137 1.02752 1.22546 0.80075 0.99066 0.98851 0.92278 0.77756 0.90283 0.89406 0.88419 0.89686 0.74764 0.93492 0.93333 0.84519 0.84653 0.89055 0.85632 0.92384 0.85158 0.92961 0.85967 0.89707 0.89828 0.92960 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.71 13.96 21.45 0.30 -55.41 16 2 C 0.04 1.94 5.47 84.66 0.46 2.40 16 3 Si 0.94 41.49 23.98 68.60 1.65 43.14 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 5 H -0.31 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.22 -9.12 5.44 99.48 0.54 -8.58 16 7 C -0.55 -29.49 8.83 25.60 0.23 -29.26 16 8 H 0.04 2.21 8.03 -2.91 -0.02 2.19 16 9 C 0.22 9.25 0.70 -10.15 -0.01 9.25 16 10 O -0.57 -24.05 10.83 -148.98 -1.61 -25.67 16 11 C -0.13 -4.59 4.63 31.78 0.15 -4.44 16 12 C 0.11 2.92 6.15 86.73 0.53 3.46 16 13 N -0.63 -21.64 3.33 -829.76 -2.76 -24.40 16 14 C 0.71 25.08 8.49 179.05 1.52 26.60 16 15 O -0.64 -29.17 16.60 -3.99 -0.07 -29.24 16 16 N -0.72 -16.72 5.52 -478.54 -2.64 -19.36 16 17 C 0.16 3.59 4.96 86.38 0.43 4.02 16 18 C -0.14 -1.50 4.19 29.85 0.12 -1.38 16 19 C 0.52 9.08 7.71 87.66 0.68 9.75 16 20 O -0.58 -16.51 15.45 -3.02 -0.05 -16.55 16 21 N -0.62 -7.43 3.01 -816.48 -2.46 -9.89 16 22 C 0.07 0.29 6.57 86.49 0.57 0.85 16 23 C 0.04 0.21 7.00 72.22 0.51 0.72 16 24 O -0.40 -4.38 10.74 -148.98 -1.60 -5.98 16 25 C 0.05 0.51 6.99 72.09 0.50 1.02 16 26 C 0.07 0.90 6.64 86.37 0.57 1.47 16 27 C 0.12 4.92 6.08 86.86 0.53 5.45 16 28 H 0.27 15.03 8.31 -92.70 -0.77 14.26 16 29 H 0.37 14.50 9.06 -74.06 -0.67 13.83 16 30 H 0.08 2.74 4.80 -2.38 -0.01 2.73 16 31 H 0.09 3.12 8.04 -2.39 -0.02 3.10 16 32 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.41 6.00 7.46 -92.71 -0.69 5.31 16 35 H 0.05 1.33 8.10 -2.39 -0.02 1.31 16 36 H 0.05 1.36 8.10 -2.39 -0.02 1.34 16 37 H 0.14 0.64 8.01 -2.38 -0.02 0.62 16 38 H 0.14 0.64 7.67 -2.39 -0.02 0.62 16 39 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.13 -0.16 6.05 -2.39 -0.01 -0.18 16 41 H 0.06 0.32 8.14 -2.38 -0.02 0.30 16 42 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.08 1.38 7.08 -2.39 -0.02 1.36 16 46 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.05 2.30 8.04 -2.39 -0.02 2.29 16 48 H 0.06 2.48 8.03 -2.39 -0.02 2.46 16 Total: -1.00 -84.51 379.38 -2.99 -87.50 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: -0.53 Total: 25.95 kcal Atomic # 6 Polarization: 23.12 SS G_CDS: 6.79 Total: 29.91 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -7.56 Total: -109.06 kcal Atomic # 8 Polarization: -74.11 SS G_CDS: -3.33 Total: -77.44 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 1.65 Total: 43.14 kcal Total: -84.51 -2.99 -87.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645858679.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.483 kcal (2) G-P(sol) polarization free energy of solvation -84.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds