Wall clock time and date at job start Sat Apr 11 2020 06:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00136 * 2 1 4 4 H 1.48500 * 109.46935 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47176 * 300.00016 * 3 2 1 6 6 H 1.48495 * 109.46896 * 59.99956 * 3 2 1 7 7 C 1.37883 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99788 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99945 * 0.02562 * 7 2 1 10 10 O 1.42894 * 110.88632 * 62.42480 * 9 7 2 11 11 C 1.55157 * 111.03524 * 186.32830 * 9 7 2 12 12 C 1.54332 * 103.02144 * 153.39149 * 11 9 7 13 13 N 1.47029 * 107.26419 * 338.14338 * 12 11 9 14 14 C 1.34775 * 125.64476 * 178.84225 * 13 12 11 15 15 O 1.21589 * 119.99889 * 179.68757 * 14 13 12 16 16 N 1.34775 * 120.00068 * 359.69825 * 14 13 12 17 17 C 1.46504 * 119.99531 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.46883 * 179.97438 * 17 16 14 19 19 C 1.50698 * 109.47184 * 179.97438 * 18 17 16 20 20 O 1.21282 * 120.00025 * 0.02562 * 19 18 17 21 21 N 1.34776 * 120.00035 * 179.97438 * 19 18 17 22 22 C 1.47147 * 120.98216 * 359.72311 * 21 19 18 23 23 C 1.53710 * 108.16386 * 129.42653 * 22 21 19 24 24 O 1.42968 * 109.14456 * 52.53860 * 23 22 21 25 25 C 1.42959 * 114.16912 * 297.29091 * 24 23 22 26 26 C 1.47150 * 120.97997 * 180.02562 * 21 19 18 27 27 C 1.47424 * 108.70181 * 358.58552 * 13 12 11 28 28 H 0.97001 * 120.00093 * 359.97438 * 1 2 3 29 29 H 0.96697 * 114.00485 * 297.57276 * 10 9 7 30 30 H 1.09000 * 110.72212 * 271.95521 * 11 9 7 31 31 H 1.09010 * 110.71635 * 35.22804 * 11 9 7 32 32 H 1.08992 * 109.99403 * 218.66550 * 12 11 9 33 33 H 1.09003 * 109.77877 * 97.49555 * 12 11 9 34 34 H 0.96992 * 120.00503 * 359.97438 * 16 14 13 35 35 H 1.09001 * 109.46891 * 60.00097 * 17 16 14 36 36 H 1.08993 * 109.47378 * 299.99469 * 17 16 14 37 37 H 1.09001 * 109.46801 * 300.00349 * 18 17 16 38 38 H 1.09001 * 109.46998 * 59.99945 * 18 17 16 39 39 H 1.08996 * 109.68524 * 249.21394 * 22 21 19 40 40 H 1.09006 * 109.68359 * 9.76007 * 22 21 19 41 41 H 1.08995 * 109.66109 * 292.57734 * 23 22 21 42 42 H 1.09000 * 109.48932 * 172.39315 * 23 22 21 43 43 H 1.09005 * 109.51001 * 302.65846 * 25 24 23 44 44 H 1.08999 * 109.55654 * 182.52862 * 25 24 23 45 45 H 1.08996 * 109.68272 * 350.23535 * 26 21 19 46 46 H 1.09000 * 109.68526 * 110.75782 * 26 21 19 47 47 H 1.09000 * 110.36637 * 143.19904 * 27 13 12 48 48 H 1.09002 * 110.36510 * 265.40535 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 0.4614 -2.6316 -1.1831 11 6 2.2188 -3.7012 0.1608 12 6 1.3285 -4.7802 0.8126 13 7 0.2053 -4.0864 1.4598 14 6 -0.8081 -4.6797 2.1214 15 8 -1.6843 -4.0032 2.6244 16 7 -0.8501 -6.0227 2.2256 17 6 -1.9514 -6.6674 2.9452 18 6 -1.7610 -8.1853 2.9149 19 6 -2.8934 -8.8485 3.6557 20 8 -3.7670 -8.1736 4.1580 21 7 -2.9360 -10.1916 3.7591 22 6 -1.8914 -11.0315 3.1519 23 6 -1.3820 -12.0108 4.2216 24 8 -2.4958 -12.6994 4.7954 25 6 -3.4209 -11.8496 5.4779 26 6 -4.0319 -10.8617 4.4769 27 6 0.3744 -2.6342 1.2706 28 1 -0.4850 0.8400 0.0004 29 1 -0.2245 -1.9564 -1.2761 30 1 2.5841 -4.0345 -0.8106 31 1 3.0491 -3.4428 0.8183 32 1 1.8997 -5.3351 1.5567 33 1 0.9530 -5.4600 0.0478 34 1 -0.1513 -6.5624 1.8242 35 1 -2.8970 -6.4106 2.4678 36 1 -1.9609 -6.3227 3.9792 37 1 -1.7517 -8.5297 1.8808 38 1 -0.8153 -8.4424 3.3920 39 1 -2.3087 -11.5860 2.3114 40 1 -1.0701 -10.4036 2.8065 41 1 -0.8536 -11.4609 5.0003 42 1 -0.7058 -12.7317 3.7621 43 1 -2.8998 -11.2990 6.2612 44 1 -4.2119 -12.4537 5.9222 45 1 -4.6287 -10.1213 5.0095 46 1 -4.6611 -11.3990 3.7674 47 1 -0.5931 -2.1565 1.1164 48 1 0.8802 -2.1959 2.1309 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645858680.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:06 Heat of formation + Delta-G solvation = -146.736018 kcal Electronic energy + Delta-G solvation = -30044.979091 eV Core-core repulsion = 25714.394876 eV Total energy + Delta-G solvation = -4330.584215 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.79219 -39.62751 -38.76232 -37.40265 -35.23210 -34.91654 -34.20332 -32.23873 -32.21272 -30.99156 -29.79807 -28.28193 -27.69777 -25.42726 -24.69822 -23.76863 -22.54333 -22.00420 -19.91845 -19.65549 -19.26868 -17.76374 -17.57759 -17.03577 -16.89370 -16.46352 -16.17083 -15.77496 -15.62125 -15.40178 -15.20764 -14.92156 -14.53526 -14.40230 -14.10245 -13.78846 -13.59398 -13.09687 -13.02543 -12.94059 -12.76246 -12.48679 -12.11087 -11.96950 -11.85444 -11.72138 -11.62439 -11.34554 -11.27695 -11.03989 -10.80830 -10.72903 -10.59259 -10.45140 -10.19913 -10.17611 -9.59700 -9.35297 -9.07693 -8.83147 -8.68471 -8.33861 -7.67437 -6.25714 -4.35661 2.22590 2.31457 3.12529 3.21817 3.25511 3.30161 3.33157 3.77571 4.05679 4.14585 4.27681 4.37285 4.48654 4.52448 4.57175 4.62081 4.69216 4.77810 4.91197 5.01266 5.04869 5.09233 5.17666 5.25235 5.38138 5.40353 5.63395 5.74319 5.81664 5.86243 5.96362 6.01569 6.14232 6.51301 6.51469 6.70407 6.72355 6.83166 6.90016 6.98162 7.25316 7.34368 7.65130 7.73666 7.76357 8.05074 8.54623 8.69020 9.15534 9.31741 9.39890 10.81299 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.030842 B = 0.001897 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.624625 B =14758.948306 C =15259.064827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.070 3.930 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.538 4.538 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.106 3.894 13 N -0.629 5.629 14 C 0.716 3.284 15 O -0.592 6.592 16 N -0.754 5.754 17 C 0.156 3.844 18 C -0.151 4.151 19 C 0.523 3.477 20 O -0.527 6.527 21 N -0.621 5.621 22 C 0.071 3.929 23 C 0.046 3.954 24 O -0.380 6.380 25 C 0.048 3.952 26 C 0.076 3.924 27 C 0.113 3.887 28 H 0.270 0.730 29 H 0.381 0.619 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.391 0.609 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.058 0.942 42 H 0.108 0.892 43 H 0.057 0.943 44 H 0.107 0.893 45 H 0.103 0.897 46 H 0.076 0.924 47 H 0.085 0.915 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.222 -25.538 6.712 26.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.207 3.793 10 O -0.392 6.392 11 C -0.154 4.154 12 C -0.018 4.018 13 N -0.366 5.366 14 C 0.418 3.582 15 O -0.471 6.471 16 N -0.412 5.412 17 C 0.031 3.969 18 C -0.192 4.192 19 C 0.311 3.689 20 O -0.402 6.402 21 N -0.357 5.357 22 C -0.052 4.052 23 C -0.032 4.032 24 O -0.298 6.298 25 C -0.030 4.030 26 C -0.046 4.046 27 C -0.008 4.008 28 H 0.080 0.920 29 H 0.231 0.769 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.225 0.775 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.116 0.884 41 H 0.076 0.924 42 H 0.126 0.874 43 H 0.075 0.925 44 H 0.125 0.875 45 H 0.122 0.878 46 H 0.095 0.905 47 H 0.104 0.896 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.211 -25.252 7.301 26.379 hybrid contribution 0.486 1.250 -0.107 1.346 sum -1.725 -24.001 7.194 25.116 Atomic orbital electron populations 1.69731 1.05968 1.27807 1.49421 1.25094 0.95043 0.99780 0.93398 0.86355 0.80009 0.82809 0.77753 1.19610 1.20786 1.20781 1.21485 0.93635 0.90031 1.52455 0.91497 1.19639 0.86654 0.91558 0.81429 1.86091 1.51570 1.57180 1.44325 1.22589 0.97547 0.95216 1.00023 1.21922 0.88324 0.96091 0.95462 1.47943 1.23193 1.09788 1.55649 1.15473 0.81927 0.81222 0.79568 1.90911 1.39541 1.63135 1.53475 1.45057 1.28913 1.05648 1.61586 1.20736 0.90139 0.88052 0.97952 1.21853 0.98193 0.96934 1.02194 1.20491 0.87090 0.81280 0.79991 1.90765 1.39549 1.62629 1.47259 1.48151 1.26135 1.05676 1.55783 1.22580 0.91704 0.94220 0.96732 1.23079 0.88784 0.95841 0.95448 1.87979 1.35486 1.33921 1.72428 1.23018 0.93178 0.93086 0.93679 1.22306 0.89853 0.96515 0.95971 1.23136 1.02584 0.75633 0.99487 0.92036 0.76887 0.90794 0.90445 0.93196 0.92729 0.77543 0.90938 0.91009 0.88007 0.88163 0.90085 0.88367 0.92361 0.87392 0.92463 0.87457 0.87850 0.90548 0.89642 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.96 10.69 55.43 0.59 -23.37 16 2 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 3 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.54 -13.91 8.27 -34.44 -0.28 -14.20 16 8 H 0.07 1.69 7.79 -52.49 -0.41 1.29 16 9 C 0.25 5.95 0.87 -89.62 -0.08 5.87 16 10 O -0.58 -14.78 13.16 -35.23 -0.46 -15.24 16 11 C -0.12 -2.23 6.13 -24.89 -0.15 -2.38 16 12 C 0.11 1.77 6.15 -3.06 -0.02 1.75 16 13 N -0.63 -13.03 3.33 -176.23 -0.59 -13.61 16 14 C 0.72 14.81 8.49 -86.92 -0.74 14.08 16 15 O -0.59 -14.94 16.60 5.29 0.09 -14.85 16 16 N -0.75 -11.13 5.52 -65.22 -0.36 -11.49 16 17 C 0.16 2.11 4.96 -4.04 -0.02 2.09 16 18 C -0.15 -1.27 4.19 -27.88 -0.12 -1.39 16 19 C 0.52 5.46 7.71 -10.99 -0.08 5.38 16 20 O -0.53 -7.78 15.45 5.56 0.09 -7.69 16 21 N -0.62 -4.83 3.01 -172.00 -0.52 -5.35 16 22 C 0.07 0.33 6.57 -3.32 -0.02 0.31 16 23 C 0.05 0.21 7.00 37.53 0.26 0.48 16 24 O -0.38 -2.67 10.74 -35.23 -0.38 -3.05 16 25 C 0.05 0.28 6.99 37.33 0.26 0.54 16 26 C 0.08 0.55 6.64 -3.51 -0.02 0.52 16 27 C 0.11 2.76 5.38 -2.53 -0.01 2.75 16 28 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.38 9.99 7.56 45.56 0.34 10.34 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.08 1.41 8.03 -51.92 -0.42 0.99 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.39 4.44 7.46 -40.82 -0.30 4.14 16 35 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 36 H 0.07 1.11 8.10 -51.93 -0.42 0.68 16 37 H 0.10 0.64 8.00 -51.93 -0.42 0.23 16 38 H 0.10 0.59 7.67 -51.93 -0.40 0.19 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.10 0.27 6.05 -51.93 -0.31 -0.04 16 41 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.10 0.87 7.08 -51.93 -0.37 0.50 16 46 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.09 2.37 7.33 -51.93 -0.38 1.98 16 48 H 0.06 1.44 8.03 -51.93 -0.42 1.02 16 LS Contribution 386.79 15.07 5.83 5.83 Total: -1.00 -34.85 386.79 -8.72 -43.56 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -6.86 Total: 12.35 kcal Atomic # 6 Polarization: 18.67 SS G_CDS: -1.12 Total: 17.55 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: -0.87 Total: -53.83 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -0.67 Total: -40.83 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.85 -8.72 -43.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645858680.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.172 kcal (2) G-P(sol) polarization free energy of solvation -34.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds