Wall clock time and date at job start Sat Apr 11 2020 06:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00136 * 2 1 4 4 H 1.48500 * 109.46935 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47176 * 300.00016 * 3 2 1 6 6 H 1.48495 * 109.46896 * 59.99956 * 3 2 1 7 7 C 1.37883 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99788 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99945 * 0.02562 * 7 2 1 10 10 O 1.42894 * 110.88632 * 62.42480 * 9 7 2 11 11 C 1.55157 * 111.03524 * 186.32830 * 9 7 2 12 12 C 1.54332 * 103.02144 * 153.39149 * 11 9 7 13 13 N 1.47029 * 107.26419 * 338.14338 * 12 11 9 14 14 C 1.34775 * 125.64476 * 178.84225 * 13 12 11 15 15 O 1.21589 * 119.99889 * 179.68757 * 14 13 12 16 16 N 1.34775 * 120.00068 * 359.69825 * 14 13 12 17 17 C 1.46504 * 119.99531 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.46883 * 179.97438 * 17 16 14 19 19 C 1.50698 * 109.47184 * 179.97438 * 18 17 16 20 20 O 1.21282 * 120.00025 * 0.02562 * 19 18 17 21 21 N 1.34776 * 120.00035 * 179.97438 * 19 18 17 22 22 C 1.47147 * 120.98216 * 359.72311 * 21 19 18 23 23 C 1.53710 * 108.16386 * 129.42653 * 22 21 19 24 24 O 1.42968 * 109.14456 * 52.53860 * 23 22 21 25 25 C 1.42959 * 114.16912 * 297.29091 * 24 23 22 26 26 C 1.47150 * 120.97997 * 180.02562 * 21 19 18 27 27 C 1.47424 * 108.70181 * 358.58552 * 13 12 11 28 28 H 0.97001 * 120.00093 * 359.97438 * 1 2 3 29 29 H 0.96697 * 114.00485 * 297.57276 * 10 9 7 30 30 H 1.09000 * 110.72212 * 271.95521 * 11 9 7 31 31 H 1.09010 * 110.71635 * 35.22804 * 11 9 7 32 32 H 1.08992 * 109.99403 * 218.66550 * 12 11 9 33 33 H 1.09003 * 109.77877 * 97.49555 * 12 11 9 34 34 H 0.96992 * 120.00503 * 359.97438 * 16 14 13 35 35 H 1.09001 * 109.46891 * 60.00097 * 17 16 14 36 36 H 1.08993 * 109.47378 * 299.99469 * 17 16 14 37 37 H 1.09001 * 109.46801 * 300.00349 * 18 17 16 38 38 H 1.09001 * 109.46998 * 59.99945 * 18 17 16 39 39 H 1.08996 * 109.68524 * 249.21394 * 22 21 19 40 40 H 1.09006 * 109.68359 * 9.76007 * 22 21 19 41 41 H 1.08995 * 109.66109 * 292.57734 * 23 22 21 42 42 H 1.09000 * 109.48932 * 172.39315 * 23 22 21 43 43 H 1.09005 * 109.51001 * 302.65846 * 25 24 23 44 44 H 1.08999 * 109.55654 * 182.52862 * 25 24 23 45 45 H 1.08996 * 109.68272 * 350.23535 * 26 21 19 46 46 H 1.09000 * 109.68526 * 110.75782 * 26 21 19 47 47 H 1.09000 * 110.36637 * 143.19904 * 27 13 12 48 48 H 1.09002 * 110.36510 * 265.40535 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 0.4614 -2.6316 -1.1831 11 6 2.2188 -3.7012 0.1608 12 6 1.3285 -4.7802 0.8126 13 7 0.2053 -4.0864 1.4598 14 6 -0.8081 -4.6797 2.1214 15 8 -1.6843 -4.0032 2.6244 16 7 -0.8501 -6.0227 2.2256 17 6 -1.9514 -6.6674 2.9452 18 6 -1.7610 -8.1853 2.9149 19 6 -2.8934 -8.8485 3.6557 20 8 -3.7670 -8.1736 4.1580 21 7 -2.9360 -10.1916 3.7591 22 6 -1.8914 -11.0315 3.1519 23 6 -1.3820 -12.0108 4.2216 24 8 -2.4958 -12.6994 4.7954 25 6 -3.4209 -11.8496 5.4779 26 6 -4.0319 -10.8617 4.4769 27 6 0.3744 -2.6342 1.2706 28 1 -0.4850 0.8400 0.0004 29 1 -0.2245 -1.9564 -1.2761 30 1 2.5841 -4.0345 -0.8106 31 1 3.0491 -3.4428 0.8183 32 1 1.8997 -5.3351 1.5567 33 1 0.9530 -5.4600 0.0478 34 1 -0.1513 -6.5624 1.8242 35 1 -2.8970 -6.4106 2.4678 36 1 -1.9609 -6.3227 3.9792 37 1 -1.7517 -8.5297 1.8808 38 1 -0.8153 -8.4424 3.3920 39 1 -2.3087 -11.5860 2.3114 40 1 -1.0701 -10.4036 2.8065 41 1 -0.8536 -11.4609 5.0003 42 1 -0.7058 -12.7317 3.7621 43 1 -2.8998 -11.2990 6.2612 44 1 -4.2119 -12.4537 5.9222 45 1 -4.6287 -10.1213 5.0095 46 1 -4.6611 -11.3990 3.7674 47 1 -0.5931 -2.1565 1.1164 48 1 0.8802 -2.1959 2.1309 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645858680.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:05 Heat of formation + Delta-G solvation = -176.008695 kcal Electronic energy + Delta-G solvation = -30046.248450 eV Core-core repulsion = 25714.394876 eV Total energy + Delta-G solvation = -4331.853574 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.52911 -41.13839 -39.46104 -39.06141 -36.25024 -36.01818 -35.86720 -34.21849 -32.92501 -32.09928 -31.14033 -29.51205 -28.83652 -27.05985 -25.53358 -24.70227 -23.88397 -22.76154 -21.45034 -21.19820 -20.13098 -19.22693 -18.78421 -18.52663 -17.45619 -17.30185 -17.23322 -16.86431 -16.73680 -16.60761 -16.20185 -16.07140 -15.98600 -15.53368 -15.32096 -14.91265 -14.74235 -14.63181 -14.46836 -14.06304 -13.75955 -13.55156 -13.50736 -13.27016 -13.03813 -12.86043 -12.65415 -12.57118 -12.46287 -12.34301 -12.31206 -12.18229 -12.05453 -11.76624 -11.39303 -11.25027 -11.17509 -10.93474 -10.66326 -10.32711 -10.22859 -9.66191 -9.31582 -8.23370 -6.40648 1.40627 1.44412 1.47108 1.49321 1.55567 1.92450 2.14992 2.39060 2.87575 3.02592 3.06585 3.48742 3.67274 3.76781 3.83062 3.99624 4.00347 4.11084 4.11971 4.21441 4.22527 4.28878 4.37115 4.38800 4.55031 4.65881 4.66723 4.75410 4.78318 4.80015 4.86083 4.87018 4.95410 5.10469 5.13340 5.32475 5.33603 5.38720 5.44739 5.49415 5.77863 6.06819 6.11254 6.17793 6.23341 6.67619 7.00534 7.08422 7.28766 7.36174 7.58095 8.81772 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.030842 B = 0.001897 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.624625 B =14758.948306 C =15259.064827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.023 3.977 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.285 1.285 7 C -0.553 4.553 8 H 0.071 0.929 9 C 0.231 3.769 10 O -0.587 6.587 11 C -0.110 4.110 12 C 0.106 3.894 13 N -0.633 5.633 14 C 0.708 3.292 15 O -0.649 6.649 16 N -0.724 5.724 17 C 0.159 3.841 18 C -0.135 4.135 19 C 0.517 3.483 20 O -0.585 6.585 21 N -0.616 5.616 22 C 0.066 3.934 23 C 0.041 3.959 24 O -0.397 6.397 25 C 0.054 3.946 26 C 0.072 3.928 27 C 0.127 3.873 28 H 0.268 0.732 29 H 0.372 0.628 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.415 0.585 35 H 0.042 0.958 36 H 0.047 0.953 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.091 0.909 40 H 0.126 0.874 41 H 0.059 0.941 42 H 0.132 0.868 43 H 0.053 0.947 44 H 0.123 0.877 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.040 0.960 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.547 -28.535 6.055 29.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.178 4.178 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.207 1.207 6 H -0.211 1.211 7 C -0.591 4.591 8 H 0.089 0.911 9 C 0.190 3.810 10 O -0.394 6.394 11 C -0.148 4.148 12 C -0.016 4.016 13 N -0.369 5.369 14 C 0.410 3.590 15 O -0.532 6.532 16 N -0.382 5.382 17 C 0.033 3.967 18 C -0.174 4.174 19 C 0.307 3.693 20 O -0.464 6.464 21 N -0.351 5.351 22 C -0.056 4.056 23 C -0.036 4.036 24 O -0.315 6.315 25 C -0.024 4.024 26 C -0.051 4.051 27 C 0.003 3.997 28 H 0.077 0.923 29 H 0.220 0.780 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.096 0.904 34 H 0.252 0.748 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.153 0.847 38 H 0.157 0.843 39 H 0.109 0.891 40 H 0.144 0.856 41 H 0.077 0.923 42 H 0.149 0.851 43 H 0.071 0.929 44 H 0.141 0.859 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.058 0.942 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.636 -28.373 6.613 29.141 hybrid contribution -0.388 2.116 0.102 2.154 sum 0.248 -26.257 6.715 27.104 Atomic orbital electron populations 1.69865 1.07255 1.28246 1.50232 1.25870 0.95728 1.02983 0.93224 0.85408 0.79286 0.78981 0.77349 1.18477 1.20705 1.21095 1.21850 0.94014 0.91187 1.52092 0.91086 1.19892 0.87216 0.93375 0.80487 1.86081 1.51439 1.56754 1.45133 1.22599 0.97141 0.93650 1.01410 1.22180 0.86959 0.95428 0.96998 1.47866 1.24463 1.08619 1.55983 1.15759 0.81227 0.82826 0.79223 1.90872 1.41649 1.64953 1.55686 1.44714 1.29505 1.03461 1.60552 1.20679 0.88453 0.91647 0.95872 1.21772 0.98941 0.92365 1.04353 1.20859 0.86902 0.81998 0.79573 1.90752 1.41755 1.64074 1.49864 1.48256 1.26678 1.05177 1.54946 1.22891 0.91571 0.94285 0.96818 1.23293 0.88392 0.96393 0.95494 1.87962 1.36165 1.34744 1.72640 1.23001 0.93489 0.92845 0.93016 1.22357 0.90012 0.96267 0.96423 1.22662 0.99959 0.77880 0.99165 0.92301 0.77979 0.89409 0.89266 0.88616 0.90380 0.74789 0.93941 0.93452 0.84691 0.84338 0.89111 0.85645 0.92295 0.85063 0.92906 0.85930 0.89783 0.89862 0.94187 0.94382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.02 10.69 21.45 0.23 -50.79 16 2 C 0.02 1.20 5.29 84.66 0.45 1.64 16 3 Si 0.96 42.08 29.54 68.60 2.03 44.11 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.55 -28.61 8.27 25.60 0.21 -28.39 16 8 H 0.07 3.53 7.79 -2.91 -0.02 3.50 16 9 C 0.23 11.03 0.87 -10.15 -0.01 11.02 16 10 O -0.59 -29.94 13.16 -148.98 -1.96 -31.90 16 11 C -0.11 -3.94 6.13 31.79 0.19 -3.74 16 12 C 0.11 3.16 6.15 86.73 0.53 3.69 16 13 N -0.63 -25.68 3.33 -829.74 -2.76 -28.44 16 14 C 0.71 29.19 8.49 179.06 1.52 30.71 16 15 O -0.65 -34.19 16.60 -4.00 -0.07 -34.25 16 16 N -0.72 -19.84 5.52 -478.52 -2.64 -22.48 16 17 C 0.16 4.18 4.96 86.38 0.43 4.61 16 18 C -0.13 -1.83 4.19 29.85 0.12 -1.70 16 19 C 0.52 10.20 7.71 87.66 0.68 10.87 16 20 O -0.58 -17.94 15.45 -3.04 -0.05 -17.99 16 21 N -0.62 -8.41 3.01 -816.49 -2.46 -10.87 16 22 C 0.07 0.37 6.57 86.49 0.57 0.93 16 23 C 0.04 0.25 7.00 72.22 0.51 0.75 16 24 O -0.40 -4.67 10.74 -148.98 -1.60 -6.27 16 25 C 0.05 0.57 6.99 72.09 0.50 1.07 16 26 C 0.07 0.99 6.64 86.37 0.57 1.56 16 27 C 0.13 6.35 5.38 86.85 0.47 6.82 16 28 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.37 20.20 7.56 -74.06 -0.56 19.64 16 30 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.09 2.96 8.03 -2.38 -0.02 2.94 16 32 H 0.10 2.05 8.14 -2.39 -0.02 2.04 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 34 H 0.41 7.50 7.46 -92.71 -0.69 6.81 16 35 H 0.04 1.39 8.10 -2.39 -0.02 1.37 16 36 H 0.05 1.50 8.10 -2.39 -0.02 1.48 16 37 H 0.14 1.02 8.00 -2.39 -0.02 1.00 16 38 H 0.14 0.89 7.67 -2.39 -0.02 0.87 16 39 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.13 0.00 6.05 -2.38 -0.01 -0.01 16 41 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 42 H 0.13 0.17 8.14 -2.39 -0.02 0.15 16 43 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 44 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.08 1.49 7.08 -2.39 -0.02 1.48 16 46 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.04 2.34 7.33 -2.39 -0.02 2.32 16 48 H 0.04 1.99 8.03 -2.39 -0.02 1.97 16 Total: -1.00 -82.45 386.79 -2.79 -85.25 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: -0.26 Total: 33.78 kcal Atomic # 6 Polarization: 33.11 SS G_CDS: 6.75 Total: 39.86 kcal Atomic # 7 Polarization: -104.95 SS G_CDS: -7.63 Total: -112.58 kcal Atomic # 8 Polarization: -86.73 SS G_CDS: -3.67 Total: -90.41 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -82.45 -2.79 -85.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645858680.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.760 kcal (2) G-P(sol) polarization free energy of solvation -82.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds