Wall clock time and date at job start Sat Apr 11 2020 06:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30838 * 125.90074 * 2 1 4 4 N 1.40085 * 108.20778 * 180.02562 * 3 2 1 5 5 C 1.46500 * 126.03813 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47437 * 89.97569 * 5 4 3 7 7 H 1.08001 * 119.99652 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00146 * 179.97438 * 6 5 4 9 9 N 1.31509 * 119.99964 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99854 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47458 * 89.99682 * 10 8 6 12 12 H 1.48498 * 109.46644 * 209.99836 * 10 8 6 13 13 H 1.48501 * 109.47063 * 329.99789 * 10 8 6 14 14 C 1.34949 * 107.92468 * 359.76134 * 4 3 2 15 15 C 1.50697 * 126.12836 * 180.24031 * 14 4 3 16 16 C 1.35324 * 107.74484 * 0.38618 * 14 4 3 17 17 C 1.50693 * 126.03825 * 179.87478 * 16 14 4 18 18 C 1.53003 * 109.47295 * 269.71427 * 17 16 14 19 19 C 1.50693 * 109.47295 * 179.97438 * 18 17 16 20 20 O 1.21284 * 120.00310 * 0.02562 * 19 18 17 21 21 N 1.34780 * 120.00205 * 180.02562 * 19 18 17 22 22 C 1.47579 * 134.49439 * 180.02562 * 21 19 18 23 23 C 1.53950 * 86.11621 * 204.63969 * 22 21 19 24 24 C 1.53004 * 113.73988 * 221.94050 * 23 22 21 25 25 F 1.39896 * 109.47009 * 298.07600 * 24 23 22 26 26 F 1.39901 * 109.46880 * 58.07517 * 24 23 22 27 27 C 1.47925 * 134.49772 * 0.02562 * 21 19 18 28 28 H 1.08997 * 109.47203 * 269.97432 * 1 2 3 29 29 H 1.09005 * 109.46940 * 29.97653 * 1 2 3 30 30 H 1.09002 * 109.47431 * 149.97038 * 1 2 3 31 31 H 1.09002 * 109.46596 * 209.97705 * 5 4 3 32 32 H 1.09003 * 109.47109 * 329.97326 * 5 4 3 33 33 H 0.97001 * 119.99912 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.47263 * 270.17121 * 15 14 4 35 35 H 1.08996 * 109.47141 * 30.17964 * 15 14 4 36 36 H 1.09002 * 109.47011 * 150.17624 * 15 14 4 37 37 H 1.09003 * 109.47319 * 149.71583 * 17 16 14 38 38 H 1.09001 * 109.47328 * 29.71771 * 17 16 14 39 39 H 1.09003 * 109.46810 * 59.99844 * 18 17 16 40 40 H 1.09001 * 109.47213 * 300.00414 * 18 17 16 41 41 H 1.09003 * 113.77049 * 90.34034 * 22 21 19 42 42 H 1.08993 * 113.77081 * 318.93795 * 22 21 19 43 43 H 1.09002 * 113.74276 * 90.74001 * 23 22 21 44 44 H 1.08998 * 109.46740 * 178.07262 * 24 23 22 45 45 H 1.09006 * 113.87423 * 41.10256 * 27 21 19 46 46 H 1.08997 * 113.77410 * 269.60428 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0003 6 6 5.1950 1.7975 1.4206 7 1 4.6288 1.3823 2.2414 8 6 6.2882 2.5989 1.6728 9 7 6.6413 2.8582 2.9128 10 14 7.2669 3.3174 0.2532 11 1 6.6983 4.6369 -0.1223 12 1 8.6834 3.4878 0.6648 13 1 7.1968 2.3987 -0.9114 14 6 3.6142 -0.7154 0.0044 15 6 4.8350 -1.5989 0.0108 16 6 2.3271 -1.1331 -0.0006 17 6 1.8599 -2.5657 -0.0004 18 6 1.7013 -3.0507 -1.4429 19 6 1.2347 -4.4836 -1.4426 20 8 1.0470 -5.0601 -0.3922 21 7 1.0260 -5.1246 -2.6098 22 6 0.5832 -6.4831 -2.9789 23 6 1.3318 -6.2538 -4.3044 24 6 0.5739 -6.7562 -5.5348 25 9 0.3896 -8.1394 -5.4364 26 9 -0.6720 -6.1236 -5.6055 27 6 1.1489 -4.7491 -4.0353 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5143 31 1 5.6093 0.9982 -0.5143 32 1 4.5564 2.4334 -0.5138 33 1 7.4102 3.4223 3.0902 34 1 5.1338 -1.8133 -1.0153 35 1 5.6488 -1.0904 0.5276 36 1 4.6052 -2.5323 0.5248 37 1 0.9012 -2.6353 0.5137 38 1 2.5935 -3.1871 0.5133 39 1 2.6600 -2.9812 -1.9570 40 1 0.9677 -2.4294 -1.9566 41 1 -0.4966 -6.5770 -3.0947 42 1 1.0158 -7.2695 -2.3604 43 1 2.3716 -6.5801 -4.2833 44 1 1.1481 -6.5291 -6.4330 45 1 2.0328 -4.1520 -4.2596 46 1 0.2350 -4.3346 -4.4608 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647121247.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:09 Heat of formation + Delta-G solvation = -43.208372 kcal Electronic energy + Delta-G solvation = -29227.082703 eV Core-core repulsion = 24789.900268 eV Total energy + Delta-G solvation = -4437.182435 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.166 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.50544 -47.49436 -40.78375 -40.44077 -38.13701 -34.48957 -33.40789 -32.51081 -31.48116 -30.36400 -29.29126 -27.53461 -26.66868 -26.12498 -26.05412 -23.53892 -21.94668 -21.25546 -19.33385 -18.90164 -18.71457 -18.14738 -17.78122 -17.57057 -17.14523 -17.03189 -15.90535 -15.66680 -15.43778 -14.70957 -14.55681 -14.22914 -14.09002 -13.90680 -13.83586 -13.51708 -13.42530 -13.18555 -13.07283 -12.92011 -12.74059 -12.68060 -12.48601 -12.27942 -12.19007 -12.06500 -11.90607 -11.73414 -11.55030 -11.35933 -11.28995 -10.99647 -10.78329 -10.77101 -10.25174 -9.94870 -9.70738 -9.68345 -9.09223 -8.81400 -8.26413 -7.55028 -6.29037 -4.32496 2.30312 2.48629 2.66382 3.12235 3.17737 3.18589 3.19673 3.29611 3.39952 3.46501 3.71669 3.85139 4.18248 4.20074 4.43455 4.51252 4.75113 4.85963 4.90800 4.97639 5.11343 5.13017 5.16141 5.25345 5.26295 5.41780 5.46385 5.59650 5.71284 5.78568 5.88331 5.89789 5.94103 5.97920 6.18593 6.28878 6.32721 6.41061 6.47635 6.77657 6.90767 7.25860 7.31763 7.39619 7.83090 7.97525 8.28440 8.56637 8.76543 9.25927 10.83455 Molecular weight = 341.17amu Principal moments of inertia in cm(-1) A = 0.018568 B = 0.002102 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.606276 B =13317.493114 C =13772.768660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.055 3.945 3 N -0.294 5.294 4 N -0.325 5.325 5 C 0.230 3.770 6 C -0.542 4.542 7 H 0.080 0.920 8 C 0.079 3.921 9 N -0.885 5.885 10 Si 0.874 3.126 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.265 1.265 14 C 0.098 3.902 15 C -0.093 4.093 16 C -0.265 4.265 17 C -0.012 4.012 18 C -0.126 4.126 19 C 0.538 3.462 20 O -0.533 6.533 21 N -0.651 5.651 22 C 0.116 3.884 23 C -0.185 4.185 24 C 0.272 3.728 25 F -0.201 7.201 26 F -0.201 7.201 27 C 0.114 3.886 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.269 0.731 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.133 0.867 44 H 0.118 0.882 45 H 0.095 0.905 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.979 -19.045 -19.735 29.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.110 4.110 3 N -0.117 5.117 4 N -0.104 5.104 5 C 0.111 3.889 6 C -0.580 4.580 7 H 0.099 0.901 8 C -0.126 4.126 9 N -0.522 5.522 10 Si 0.700 3.300 11 H -0.196 1.196 12 H -0.205 1.205 13 H -0.189 1.189 14 C -0.033 4.033 15 C -0.152 4.152 16 C -0.277 4.277 17 C -0.051 4.051 18 C -0.166 4.166 19 C 0.330 3.670 20 O -0.408 6.408 21 N -0.388 5.388 22 C -0.006 4.006 23 C -0.204 4.204 24 C 0.218 3.782 25 F -0.183 7.183 26 F -0.183 7.183 27 C -0.010 4.010 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.151 0.849 44 H 0.136 0.864 45 H 0.113 0.887 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.752 -17.733 -18.811 27.630 hybrid contribution 0.564 -0.309 -0.612 0.887 sum -9.188 -18.041 -19.422 28.056 Atomic orbital electron populations 1.20037 0.87868 1.02099 1.02350 1.21974 0.96190 0.90678 1.02127 1.77276 0.87197 1.22612 1.24647 1.48797 1.05422 1.04023 1.52190 1.19970 0.79438 0.89802 0.99686 1.21170 1.13908 1.32546 0.90364 0.90150 1.24821 0.96631 0.95315 0.95802 1.69873 1.26819 1.36882 1.18638 0.86884 0.79997 0.80461 0.82614 1.19612 1.20525 1.18949 1.20754 0.96232 0.85365 1.00970 1.20430 0.94445 0.98060 1.02219 1.19342 0.91332 0.95090 1.21958 1.19425 1.01827 0.90838 0.93023 1.21704 1.02930 0.90580 1.01359 1.20819 0.76240 0.88680 0.81298 1.90723 1.51714 1.68284 1.30125 1.50076 1.68541 1.14806 1.05409 1.23030 0.99712 0.86255 0.91617 1.24470 1.02717 0.98801 0.94429 1.21699 0.81830 0.74064 1.00644 1.93010 1.95863 1.31809 1.97571 1.92994 1.45947 1.81817 1.97520 1.23248 1.03476 0.94106 0.80120 0.91176 0.91546 0.91409 0.93514 0.93713 0.92094 0.91307 0.89861 0.90422 0.91129 0.91206 0.89094 0.89004 0.89221 0.89183 0.84940 0.86434 0.88685 0.88374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.12 36.00 0.36 -0.54 16 2 C 0.06 1.02 7.22 -82.41 -0.59 0.43 16 3 N -0.29 -6.59 12.58 33.67 0.42 -6.16 16 4 N -0.33 -7.33 3.60 -58.31 -0.21 -7.54 16 5 C 0.23 5.48 4.88 -5.19 -0.03 5.45 16 6 C -0.54 -15.13 9.94 -34.44 -0.34 -15.47 16 7 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 8 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 9 N -0.89 -26.27 13.96 55.43 0.77 -25.50 16 10 Si 0.87 20.03 27.47 -169.99 -4.67 15.36 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16 14 C 0.10 1.88 6.93 -82.26 -0.57 1.31 16 15 C -0.09 -1.46 9.68 36.00 0.35 -1.12 16 16 C -0.27 -4.62 5.35 -105.05 -0.56 -5.18 16 17 C -0.01 -0.17 4.45 -27.88 -0.12 -0.30 16 18 C -0.13 -1.41 5.43 -27.88 -0.15 -1.56 16 19 C 0.54 6.52 8.06 -10.99 -0.09 6.43 16 20 O -0.53 -8.58 16.71 5.55 0.09 -8.49 16 21 N -0.65 -5.77 3.62 -178.05 -0.64 -6.41 16 22 C 0.12 0.84 8.22 -2.97 -0.02 0.81 16 23 C -0.18 -0.75 4.24 -89.69 -0.38 -1.13 16 24 C 0.27 1.03 5.33 37.16 0.20 1.23 16 25 F -0.20 -1.26 17.24 2.25 0.04 -1.22 16 26 F -0.20 -1.22 15.77 2.25 0.04 -1.18 16 27 C 0.11 0.56 8.08 -2.77 -0.02 0.54 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.78 7.92 -51.93 -0.41 0.37 16 31 H 0.05 1.03 6.73 -51.93 -0.35 0.68 16 32 H 0.04 1.07 7.57 -51.93 -0.39 0.67 16 33 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.45 7.74 -51.93 -0.40 1.05 16 36 H 0.08 1.07 7.14 -51.93 -0.37 0.70 16 37 H 0.07 1.03 7.88 -51.93 -0.41 0.62 16 38 H 0.07 1.03 7.09 -51.93 -0.37 0.66 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.09 0.64 7.84 -51.93 -0.41 0.24 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.13 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.12 0.07 8.14 -51.93 -0.42 -0.36 16 45 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.10 0.44 7.19 -51.93 -0.37 0.06 16 LS Contribution 391.82 15.07 5.90 5.90 Total: -1.00 -35.58 391.82 -7.21 -42.79 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -6.88 Total: -0.53 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -2.07 Total: -7.02 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.34 Total: -45.61 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.49 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.07 Total: -2.40 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.67 Total: 15.36 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.58 -7.21 -42.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647121247.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.423 kcal (2) G-P(sol) polarization free energy of solvation -35.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds