Wall clock time and date at job start Sat Apr 11 2020 06:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30838 * 125.90074 * 2 1 4 4 N 1.40085 * 108.20778 * 180.02562 * 3 2 1 5 5 C 1.46500 * 126.03813 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47437 * 89.97569 * 5 4 3 7 7 H 1.08001 * 119.99652 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00146 * 179.97438 * 6 5 4 9 9 N 1.31509 * 119.99964 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99854 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47458 * 89.99682 * 10 8 6 12 12 H 1.48498 * 109.46644 * 209.99836 * 10 8 6 13 13 H 1.48501 * 109.47063 * 329.99789 * 10 8 6 14 14 C 1.34949 * 107.92468 * 359.76134 * 4 3 2 15 15 C 1.50697 * 126.12836 * 180.24031 * 14 4 3 16 16 C 1.35324 * 107.74484 * 0.38618 * 14 4 3 17 17 C 1.50693 * 126.03825 * 179.87478 * 16 14 4 18 18 C 1.53003 * 109.47295 * 269.71427 * 17 16 14 19 19 C 1.50693 * 109.47295 * 179.97438 * 18 17 16 20 20 O 1.21284 * 120.00310 * 0.02562 * 19 18 17 21 21 N 1.34780 * 120.00205 * 180.02562 * 19 18 17 22 22 C 1.47579 * 134.49439 * 180.02562 * 21 19 18 23 23 C 1.53950 * 86.11621 * 204.63969 * 22 21 19 24 24 C 1.53004 * 113.73988 * 221.94050 * 23 22 21 25 25 F 1.39896 * 109.47009 * 298.07600 * 24 23 22 26 26 F 1.39901 * 109.46880 * 58.07517 * 24 23 22 27 27 C 1.47925 * 134.49772 * 0.02562 * 21 19 18 28 28 H 1.08997 * 109.47203 * 269.97432 * 1 2 3 29 29 H 1.09005 * 109.46940 * 29.97653 * 1 2 3 30 30 H 1.09002 * 109.47431 * 149.97038 * 1 2 3 31 31 H 1.09002 * 109.46596 * 209.97705 * 5 4 3 32 32 H 1.09003 * 109.47109 * 329.97326 * 5 4 3 33 33 H 0.97001 * 119.99912 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.47263 * 270.17121 * 15 14 4 35 35 H 1.08996 * 109.47141 * 30.17964 * 15 14 4 36 36 H 1.09002 * 109.47011 * 150.17624 * 15 14 4 37 37 H 1.09003 * 109.47319 * 149.71583 * 17 16 14 38 38 H 1.09001 * 109.47328 * 29.71771 * 17 16 14 39 39 H 1.09003 * 109.46810 * 59.99844 * 18 17 16 40 40 H 1.09001 * 109.47213 * 300.00414 * 18 17 16 41 41 H 1.09003 * 113.77049 * 90.34034 * 22 21 19 42 42 H 1.08993 * 113.77081 * 318.93795 * 22 21 19 43 43 H 1.09002 * 113.74276 * 90.74001 * 23 22 21 44 44 H 1.08998 * 109.46740 * 178.07262 * 24 23 22 45 45 H 1.09006 * 113.87423 * 41.10256 * 27 21 19 46 46 H 1.08997 * 113.77410 * 269.60428 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0003 6 6 5.1950 1.7975 1.4206 7 1 4.6288 1.3823 2.2414 8 6 6.2882 2.5989 1.6728 9 7 6.6413 2.8582 2.9128 10 14 7.2669 3.3174 0.2532 11 1 6.6983 4.6369 -0.1223 12 1 8.6834 3.4878 0.6648 13 1 7.1968 2.3987 -0.9114 14 6 3.6142 -0.7154 0.0044 15 6 4.8350 -1.5989 0.0108 16 6 2.3271 -1.1331 -0.0006 17 6 1.8599 -2.5657 -0.0004 18 6 1.7013 -3.0507 -1.4429 19 6 1.2347 -4.4836 -1.4426 20 8 1.0470 -5.0601 -0.3922 21 7 1.0260 -5.1246 -2.6098 22 6 0.5832 -6.4831 -2.9789 23 6 1.3318 -6.2538 -4.3044 24 6 0.5739 -6.7562 -5.5348 25 9 0.3896 -8.1394 -5.4364 26 9 -0.6720 -6.1236 -5.6055 27 6 1.1489 -4.7491 -4.0353 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5143 31 1 5.6093 0.9982 -0.5143 32 1 4.5564 2.4334 -0.5138 33 1 7.4102 3.4223 3.0902 34 1 5.1338 -1.8133 -1.0153 35 1 5.6488 -1.0904 0.5276 36 1 4.6052 -2.5323 0.5248 37 1 0.9012 -2.6353 0.5137 38 1 2.5935 -3.1871 0.5133 39 1 2.6600 -2.9812 -1.9570 40 1 0.9677 -2.4294 -1.9566 41 1 -0.4966 -6.5770 -3.0947 42 1 1.0158 -7.2695 -2.3604 43 1 2.3716 -6.5801 -4.2833 44 1 1.1481 -6.5291 -6.4330 45 1 2.0328 -4.1520 -4.2596 46 1 0.2350 -4.3346 -4.4608 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647121247.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:08 Heat of formation + Delta-G solvation = -66.451816 kcal Electronic energy + Delta-G solvation = -29228.090614 eV Core-core repulsion = 24789.900268 eV Total energy + Delta-G solvation = -4438.190347 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.166 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.86103 -47.87020 -42.20210 -41.19142 -38.94340 -36.10165 -34.85760 -34.25596 -32.37732 -31.59053 -30.67793 -28.50208 -27.76658 -27.21800 -26.88754 -24.83182 -23.51667 -21.80270 -20.35206 -20.18559 -19.95746 -19.25265 -18.48961 -18.26145 -18.13806 -17.64555 -17.22943 -16.74223 -16.37043 -16.31480 -15.68195 -15.16664 -14.93085 -14.88302 -14.73917 -14.50970 -14.31069 -14.13571 -14.11442 -14.01941 -13.90003 -13.63728 -13.52916 -13.42442 -13.36601 -13.20857 -12.95770 -12.87048 -12.79311 -12.51442 -12.49528 -12.13479 -11.96924 -11.91764 -11.81922 -11.73493 -11.19692 -10.92392 -10.81204 -9.84364 -9.78307 -9.02926 -8.42818 -6.54295 1.13038 1.31986 1.35559 1.44778 1.57591 1.69033 1.89064 1.95991 2.24419 2.81996 2.89515 3.09511 3.35128 3.48306 3.69570 3.82778 3.90418 4.01217 4.18640 4.19412 4.22025 4.28600 4.36965 4.44400 4.51986 4.53113 4.53741 4.58313 4.62600 4.65640 4.73105 4.77948 4.83297 4.89111 4.93437 5.02964 5.08151 5.11675 5.21736 5.28685 5.38589 5.50232 5.91194 6.04476 6.40949 6.50815 6.60631 7.04947 7.10272 7.11946 8.74047 Molecular weight = 341.17amu Principal moments of inertia in cm(-1) A = 0.018568 B = 0.002102 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.606276 B =13317.493114 C =13772.768660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.056 3.944 3 N -0.346 5.346 4 N -0.355 5.355 5 C 0.242 3.758 6 C -0.551 4.551 7 H 0.019 0.981 8 C 0.018 3.982 9 N -0.938 5.938 10 Si 0.954 3.046 11 H -0.266 1.266 12 H -0.274 1.274 13 H -0.232 1.232 14 C 0.083 3.917 15 C -0.090 4.090 16 C -0.257 4.257 17 C -0.006 4.006 18 C -0.114 4.114 19 C 0.536 3.464 20 O -0.586 6.586 21 N -0.653 5.653 22 C 0.101 3.899 23 C -0.164 4.164 24 C 0.269 3.731 25 F -0.217 7.217 26 F -0.216 7.216 27 C 0.114 3.886 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.273 0.727 34 H 0.104 0.896 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.152 0.848 44 H 0.161 0.839 45 H 0.119 0.881 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.538 -20.000 -23.772 32.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.109 4.109 3 N -0.170 5.170 4 N -0.135 5.135 5 C 0.121 3.879 6 C -0.589 4.589 7 H 0.038 0.962 8 C -0.181 4.181 9 N -0.577 5.577 10 Si 0.775 3.225 11 H -0.191 1.191 12 H -0.199 1.199 13 H -0.155 1.155 14 C -0.046 4.046 15 C -0.148 4.148 16 C -0.269 4.269 17 C -0.045 4.045 18 C -0.154 4.154 19 C 0.328 3.672 20 O -0.466 6.466 21 N -0.389 5.389 22 C -0.021 4.021 23 C -0.184 4.184 24 C 0.215 3.785 25 F -0.199 7.199 26 F -0.197 7.197 27 C -0.007 4.007 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.170 0.830 44 H 0.178 0.822 45 H 0.137 0.863 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.339 -18.726 -22.908 31.027 hybrid contribution 0.273 -0.127 0.728 0.787 sum -9.067 -18.853 -22.180 30.490 Atomic orbital electron populations 1.20207 0.84830 1.03966 1.03199 1.22760 0.98083 0.90226 0.99812 1.77201 0.87737 1.24817 1.27206 1.48687 1.05106 1.04995 1.54691 1.19683 0.80913 0.90590 0.96676 1.21268 1.13699 1.32708 0.91274 0.96247 1.25902 0.97714 0.95341 0.99183 1.70043 1.27856 1.38070 1.21685 0.85634 0.77791 0.79910 0.79176 1.19136 1.19851 1.15490 1.21456 0.98218 0.84598 1.00357 1.20533 0.92261 0.97645 1.04358 1.19682 0.90570 0.96311 1.20338 1.19368 1.01145 0.88596 0.95366 1.21556 1.04379 0.90256 0.99189 1.20885 0.75981 0.88859 0.81510 1.90701 1.54300 1.69377 1.32208 1.50176 1.66954 1.15528 1.06233 1.23206 1.00019 0.85342 0.93543 1.24399 1.03218 0.98082 0.92677 1.22144 0.81389 0.72959 1.02021 1.92981 1.95933 1.33251 1.97703 1.92968 1.47158 1.81999 1.97610 1.23535 1.05015 0.95010 0.77186 0.90726 0.90746 0.88475 0.91135 0.93802 0.91737 0.87774 0.92167 0.88777 0.91609 0.91909 0.87275 0.87435 0.89625 0.90156 0.83003 0.82203 0.86251 0.87595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.68 10.12 71.23 0.72 -0.96 16 2 C 0.06 2.06 7.22 43.10 0.31 2.37 16 3 N -0.35 -15.73 12.58 -47.39 -0.60 -16.33 16 4 N -0.35 -16.15 3.60 -338.39 -1.22 -17.36 16 5 C 0.24 11.52 4.88 85.63 0.42 11.94 16 6 C -0.55 -32.06 9.94 25.60 0.25 -31.80 16 7 H 0.02 1.31 8.06 -2.91 -0.02 1.29 16 8 C 0.02 1.03 5.47 84.66 0.46 1.49 16 9 N -0.94 -57.75 13.96 21.45 0.30 -57.45 16 10 Si 0.95 40.96 27.47 68.60 1.88 42.84 16 11 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 12 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 13 H -0.23 -8.68 6.54 99.48 0.65 -8.03 16 14 C 0.08 3.14 6.93 41.41 0.29 3.43 16 15 C -0.09 -2.70 9.68 71.23 0.69 -2.01 16 16 C -0.26 -8.72 5.35 -20.14 -0.11 -8.83 16 17 C -0.01 -0.16 4.45 29.85 0.13 -0.02 16 18 C -0.11 -2.24 5.43 29.85 0.16 -2.08 16 19 C 0.54 12.10 8.06 87.65 0.71 12.81 16 20 O -0.59 -18.77 16.71 -3.04 -0.05 -18.82 16 21 N -0.65 -10.13 3.62 -835.62 -3.02 -13.15 16 22 C 0.10 1.32 8.22 86.49 0.71 2.03 16 23 C -0.16 -0.81 4.24 -10.13 -0.04 -0.85 16 24 C 0.27 1.18 5.33 71.98 0.38 1.56 16 25 F -0.22 -2.26 17.24 44.97 0.78 -1.49 16 26 F -0.22 -2.08 15.77 44.97 0.71 -1.37 16 27 C 0.11 0.70 8.08 86.42 0.70 1.39 16 28 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.10 1.97 7.92 -2.39 -0.02 1.95 16 31 H 0.07 2.99 6.73 -2.39 -0.02 2.97 16 32 H 0.04 2.07 7.57 -2.39 -0.02 2.06 16 33 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 34 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.06 2.09 7.74 -2.39 -0.02 2.07 16 36 H 0.09 2.47 7.14 -2.39 -0.02 2.46 16 37 H 0.07 1.85 7.88 -2.39 -0.02 1.83 16 38 H 0.06 1.80 7.09 -2.39 -0.02 1.78 16 39 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.09 1.17 7.84 -2.39 -0.02 1.16 16 42 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.15 0.22 8.14 -2.39 -0.02 0.20 16 44 H 0.16 -0.57 8.14 -2.39 -0.02 -0.59 16 45 H 0.12 0.22 8.14 -2.38 -0.02 0.20 16 46 H 0.11 0.55 7.19 -2.39 -0.02 0.54 16 Total: -1.00 -84.00 391.82 5.51 -78.49 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.94 Total: 14.17 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 5.79 Total: -9.53 kcal Atomic # 7 Polarization: -99.76 SS G_CDS: -4.53 Total: -104.29 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.05 Total: -18.82 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 1.48 Total: -2.86 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 1.88 Total: 42.84 kcal Total: -84.00 5.51 -78.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647121247.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.042 kcal (2) G-P(sol) polarization free energy of solvation -84.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds