Wall clock time and date at job start Sat Apr 11 2020 06:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33251 * 125.52599 * 2 1 4 4 C 1.30825 * 109.82850 * 179.97438 * 3 2 1 5 5 C 1.50702 * 125.96432 * 179.97438 * 4 3 2 6 6 N 1.34434 * 108.08133 * 359.97438 * 4 3 2 7 7 C 1.46499 * 126.82568 * 179.73483 * 6 4 3 8 8 C 1.53005 * 109.46716 * 90.00053 * 7 6 4 9 9 N 1.46899 * 109.46604 * 179.97438 * 8 7 6 10 10 C 1.46903 * 110.99782 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47225 * 180.02562 * 10 9 8 12 12 N 1.46497 * 109.47256 * 179.97438 * 11 10 9 13 13 C 1.46503 * 119.99510 * 90.00327 * 12 11 10 14 14 C 1.34769 * 120.00555 * 270.00431 * 12 11 10 15 15 O 1.21287 * 120.00270 * 359.97438 * 14 12 11 16 16 C 1.50704 * 120.00198 * 179.97438 * 14 12 11 17 17 S 1.80998 * 109.47044 * 179.97438 * 16 14 12 18 18 C 1.76200 * 99.99911 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00076 * 359.97438 * 18 17 16 20 20 C 1.38799 * 119.99979 * 180.02562 * 18 17 16 21 21 N 1.31637 * 119.99798 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 120.00153 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47253 * 90.00330 * 22 20 18 24 24 H 1.48501 * 109.47398 * 210.00283 * 22 20 18 25 25 H 1.48500 * 109.47480 * 330.00459 * 22 20 18 26 26 N 1.30709 * 125.53091 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47249 * 90.02573 * 1 2 3 28 28 H 1.09001 * 109.47187 * 210.02584 * 1 2 3 29 29 H 1.09007 * 109.47215 * 330.02547 * 1 2 3 30 30 H 1.09003 * 109.46963 * 270.04529 * 5 4 3 31 31 H 1.09000 * 109.46797 * 30.03443 * 5 4 3 32 32 H 1.08988 * 109.47589 * 150.03703 * 5 4 3 33 33 H 1.08999 * 109.47205 * 209.99603 * 7 6 4 34 34 H 1.08998 * 109.47316 * 330.00276 * 7 6 4 35 35 H 1.08990 * 109.47183 * 299.99684 * 8 7 6 36 36 H 1.09003 * 109.47066 * 60.00552 * 8 7 6 37 37 H 1.00903 * 111.00040 * 56.05509 * 9 8 7 38 38 H 1.09001 * 109.47145 * 300.00424 * 10 9 8 39 39 H 1.08994 * 109.47025 * 60.00397 * 10 9 8 40 40 H 1.08993 * 109.47206 * 300.00477 * 11 10 9 41 41 H 1.09011 * 109.46643 * 60.00148 * 11 10 9 42 42 H 1.08999 * 109.47151 * 90.00340 * 13 12 11 43 43 H 1.09001 * 109.47271 * 209.99949 * 13 12 11 44 44 H 1.08995 * 109.47186 * 329.99864 * 13 12 11 45 45 H 1.08996 * 109.47044 * 300.00058 * 16 14 12 46 46 H 1.08999 * 109.46871 * 60.00611 * 16 14 12 47 47 H 0.97000 * 119.99540 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2812 1.0845 0.0000 4 6 3.5407 0.7305 0.0006 5 6 4.7228 1.6653 0.0002 6 7 3.5966 -0.6127 0.0015 7 6 4.8048 -1.4412 -0.0031 8 6 5.2316 -1.7284 1.4379 9 7 6.4427 -2.5597 1.4333 10 6 6.8832 -2.8557 2.8031 11 6 8.1444 -3.7208 2.7576 12 7 8.5840 -4.0155 4.1236 13 6 8.0862 -5.2093 4.8117 14 6 9.4462 -3.1886 4.7473 15 8 9.8587 -2.2005 4.1776 16 6 9.8979 -3.4915 6.1528 17 16 11.0447 -2.2060 6.7082 18 6 11.4021 -2.7948 8.3300 19 1 10.9431 -3.7047 8.6875 20 6 12.2728 -2.0888 9.1484 21 7 12.5403 -2.5290 10.3598 22 14 13.0663 -0.5147 8.5303 23 1 12.2011 0.6430 8.8719 24 1 14.3952 -0.3455 9.1710 25 1 13.2332 -0.5900 7.0567 26 7 2.2666 -1.0637 0.0005 27 1 -0.3634 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8903 0.5135 30 1 5.0075 1.8906 -1.0276 31 1 4.4557 2.5889 0.5139 32 1 5.5598 1.1928 0.5139 33 1 4.5988 -2.3812 -0.5151 34 1 5.6055 -0.9132 -0.5208 35 1 5.4376 -0.7885 1.9499 36 1 4.4309 -2.2565 1.9557 37 1 7.1808 -2.1206 0.9036 38 1 7.1011 -1.9235 3.3242 39 1 6.0939 -3.3910 3.3308 40 1 7.9269 -4.6530 2.2364 41 1 8.9336 -3.1850 2.2299 42 1 8.7523 -6.0485 4.6112 43 1 8.0510 -5.0219 5.8849 44 1 7.0852 -5.4456 4.4511 45 1 9.0325 -3.5177 6.8149 46 1 10.4000 -4.4588 6.1725 47 1 13.1490 -2.0357 10.9316 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663821698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:23 Heat of formation + Delta-G solvation = 52.023892 kcal Electronic energy + Delta-G solvation = -26046.380331 eV Core-core repulsion = 22199.460614 eV Total energy + Delta-G solvation = -3846.919717 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.49986 -39.71528 -37.46665 -35.68836 -34.58443 -33.10565 -32.47465 -31.39169 -30.08024 -29.27827 -28.17754 -26.98047 -25.92644 -25.58298 -23.15337 -22.58600 -21.07724 -20.84831 -19.35962 -17.74680 -17.28337 -16.99730 -16.62003 -16.29363 -15.94426 -15.67175 -15.01844 -14.93846 -14.73171 -14.36888 -14.28497 -13.84950 -13.77334 -13.70205 -13.38762 -13.20907 -13.11859 -13.07048 -12.83587 -12.78944 -12.59796 -12.41517 -12.34220 -12.22161 -11.89350 -11.75601 -11.32383 -11.25482 -11.04537 -10.63655 -10.32901 -10.08481 -9.89836 -9.69300 -9.58430 -9.04209 -9.02118 -8.72049 -8.54254 -6.96714 -6.32487 -4.04754 1.20126 1.82031 2.51888 2.62957 2.83396 3.10305 3.29535 3.46553 3.52301 3.62088 3.83832 3.94978 4.29006 4.29255 4.34669 4.46278 4.54977 4.72185 4.76450 4.85075 4.88868 4.92757 5.01651 5.06562 5.10738 5.15998 5.17670 5.20202 5.28950 5.33454 5.35356 5.41244 5.47916 5.60688 5.61430 5.68677 5.78643 5.95528 5.95777 6.12127 6.27921 6.42936 6.52280 6.82548 7.33727 7.76706 7.90499 8.33757 8.37887 9.13567 10.76693 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016101 B = 0.001759 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.640405 B =15911.917148 C =16739.789623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.220 3.780 3 N -0.544 5.544 4 C 0.280 3.720 5 C -0.080 4.080 6 N -0.377 5.377 7 C 0.130 3.870 8 C 0.046 3.954 9 N -0.682 5.682 10 C 0.045 3.955 11 C 0.121 3.879 12 N -0.622 5.622 13 C 0.078 3.922 14 C 0.532 3.468 15 O -0.519 6.519 16 C -0.122 4.122 17 S -0.144 6.144 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.879 5.879 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.236 1.236 26 N -0.317 5.317 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.039 0.961 36 H 0.083 0.917 37 H 0.345 0.655 38 H 0.041 0.959 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.058 0.942 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.097 0.903 46 H 0.098 0.902 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.063 0.367 -22.807 29.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.062 4.062 3 N -0.273 5.273 4 C 0.004 3.996 5 C -0.139 4.139 6 N -0.168 5.168 7 C 0.008 3.992 8 C -0.084 4.084 9 N -0.314 5.314 10 C -0.086 4.086 11 C -0.003 4.003 12 N -0.358 5.358 13 C -0.065 4.065 14 C 0.319 3.681 15 O -0.393 6.393 16 C -0.272 4.272 17 S 0.082 5.918 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.160 1.160 26 N -0.146 5.146 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.101 0.899 33 H 0.127 0.873 34 H 0.116 0.884 35 H 0.057 0.943 36 H 0.101 0.899 37 H 0.163 0.837 38 H 0.059 0.941 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.115 0.885 46 H 0.116 0.884 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.014 0.784 -23.529 30.261 hybrid contribution 0.526 0.197 1.097 1.232 sum -18.488 0.981 -22.432 29.086 Atomic orbital electron populations 1.20091 0.83865 1.04077 1.03684 1.24310 0.98303 0.85723 0.97905 1.70375 0.99847 1.30953 1.26092 1.24404 0.95350 0.83878 0.95965 1.20431 0.91267 0.97645 1.04564 1.50255 1.05901 1.05439 1.55162 1.21709 0.82584 0.96538 0.98410 1.22244 0.94282 0.96562 0.95350 1.60314 1.07334 1.48801 1.14937 1.22344 0.97788 0.99658 0.88765 1.21250 0.95648 1.00108 0.83265 1.47783 1.46671 1.25987 1.15398 1.21830 0.99391 0.86974 0.98311 1.20363 0.77586 0.82277 0.87835 1.90683 1.55200 1.26792 1.66649 1.23317 1.03817 1.05214 0.94857 1.84769 1.55450 1.33018 1.18532 1.22300 1.33130 1.14296 0.97188 0.89381 1.24713 0.94996 0.97583 0.93992 1.69940 1.34828 1.39403 1.07411 0.86735 0.79595 0.83579 0.81933 1.19229 1.19895 1.15956 1.78043 0.86645 1.22533 1.27353 0.89889 0.89993 0.89565 0.88910 0.88229 0.89896 0.87284 0.88372 0.94311 0.89889 0.83731 0.94051 0.90717 0.89743 0.89833 0.92342 0.90502 0.91158 0.88520 0.88407 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.51 36.00 0.38 -0.02 16 2 C 0.22 2.38 8.14 -156.85 -1.28 1.10 16 3 N -0.54 -6.22 11.19 -8.16 -0.09 -6.31 16 4 C 0.28 2.63 7.98 -155.69 -1.24 1.39 16 5 C -0.08 -0.42 10.01 36.01 0.36 -0.06 16 6 N -0.38 -3.56 3.64 -58.34 -0.21 -3.78 16 7 C 0.13 0.84 6.39 -4.04 -0.03 0.82 16 8 C 0.05 0.35 6.01 -3.82 -0.02 0.32 16 9 N -0.68 -5.08 6.50 -113.78 -0.74 -5.82 16 10 C 0.04 0.43 6.01 -3.82 -0.02 0.41 16 11 C 0.12 1.24 5.67 -4.04 -0.02 1.22 16 12 N -0.62 -7.80 2.87 -181.57 -0.52 -8.32 16 13 C 0.08 0.73 10.24 59.85 0.61 1.34 16 14 C 0.53 9.20 7.69 -10.99 -0.08 9.11 16 15 O -0.52 -10.69 15.44 5.55 0.09 -10.61 16 16 C -0.12 -2.31 4.71 36.01 0.17 -2.14 16 17 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 18 C -0.52 -14.85 10.04 30.94 0.31 -14.54 16 19 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 20 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 21 N -0.88 -26.28 13.97 55.49 0.78 -25.50 16 22 Si 0.86 21.55 27.74 -169.99 -4.71 16.83 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 26 N -0.32 -3.66 12.70 32.42 0.41 -3.25 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.33 7.77 -51.94 -0.40 -0.07 16 33 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.10 0.39 7.73 -51.93 -0.40 -0.01 16 35 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.34 2.16 8.73 -39.29 -0.34 1.81 16 38 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 41 H 0.08 0.97 7.42 -51.92 -0.39 0.58 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.74 6.44 -51.93 -0.33 0.41 16 44 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 45 H 0.10 1.71 7.40 -51.92 -0.38 1.33 16 46 H 0.10 1.74 8.11 -51.92 -0.42 1.32 16 47 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 408.08 15.07 6.15 6.15 Total: -1.00 -36.78 408.08 -9.55 -46.33 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -7.74 Total: -1.76 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -0.96 Total: 1.63 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -0.38 Total: -52.98 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.83 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.78 -9.55 -46.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663821698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.355 kcal (2) G-P(sol) polarization free energy of solvation -36.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds