Wall clock time and date at job start Sat Apr 11 2020 06:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33251 * 125.52599 * 2 1 4 4 C 1.30825 * 109.82850 * 179.97438 * 3 2 1 5 5 C 1.50702 * 125.96432 * 179.97438 * 4 3 2 6 6 N 1.34434 * 108.08133 * 359.97438 * 4 3 2 7 7 C 1.46499 * 126.82568 * 179.73483 * 6 4 3 8 8 C 1.53005 * 109.46716 * 90.00053 * 7 6 4 9 9 N 1.46899 * 109.46604 * 179.97438 * 8 7 6 10 10 C 1.46903 * 110.99782 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47225 * 180.02562 * 10 9 8 12 12 N 1.46497 * 109.47256 * 179.97438 * 11 10 9 13 13 C 1.46503 * 119.99510 * 90.00327 * 12 11 10 14 14 C 1.34769 * 120.00555 * 270.00431 * 12 11 10 15 15 O 1.21287 * 120.00270 * 359.97438 * 14 12 11 16 16 C 1.50704 * 120.00198 * 179.97438 * 14 12 11 17 17 S 1.80998 * 109.47044 * 179.97438 * 16 14 12 18 18 C 1.76200 * 99.99911 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00076 * 359.97438 * 18 17 16 20 20 C 1.38799 * 119.99979 * 180.02562 * 18 17 16 21 21 N 1.31637 * 119.99798 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 120.00153 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47253 * 90.00330 * 22 20 18 24 24 H 1.48501 * 109.47398 * 210.00283 * 22 20 18 25 25 H 1.48500 * 109.47480 * 330.00459 * 22 20 18 26 26 N 1.30709 * 125.53091 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47249 * 90.02573 * 1 2 3 28 28 H 1.09001 * 109.47187 * 210.02584 * 1 2 3 29 29 H 1.09007 * 109.47215 * 330.02547 * 1 2 3 30 30 H 1.09003 * 109.46963 * 270.04529 * 5 4 3 31 31 H 1.09000 * 109.46797 * 30.03443 * 5 4 3 32 32 H 1.08988 * 109.47589 * 150.03703 * 5 4 3 33 33 H 1.08999 * 109.47205 * 209.99603 * 7 6 4 34 34 H 1.08998 * 109.47316 * 330.00276 * 7 6 4 35 35 H 1.08990 * 109.47183 * 299.99684 * 8 7 6 36 36 H 1.09003 * 109.47066 * 60.00552 * 8 7 6 37 37 H 1.00903 * 111.00040 * 56.05509 * 9 8 7 38 38 H 1.09001 * 109.47145 * 300.00424 * 10 9 8 39 39 H 1.08994 * 109.47025 * 60.00397 * 10 9 8 40 40 H 1.08993 * 109.47206 * 300.00477 * 11 10 9 41 41 H 1.09011 * 109.46643 * 60.00148 * 11 10 9 42 42 H 1.08999 * 109.47151 * 90.00340 * 13 12 11 43 43 H 1.09001 * 109.47271 * 209.99949 * 13 12 11 44 44 H 1.08995 * 109.47186 * 329.99864 * 13 12 11 45 45 H 1.08996 * 109.47044 * 300.00058 * 16 14 12 46 46 H 1.08999 * 109.46871 * 60.00611 * 16 14 12 47 47 H 0.97000 * 119.99540 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2812 1.0845 0.0000 4 6 3.5407 0.7305 0.0006 5 6 4.7228 1.6653 0.0002 6 7 3.5966 -0.6127 0.0015 7 6 4.8048 -1.4412 -0.0031 8 6 5.2316 -1.7284 1.4379 9 7 6.4427 -2.5597 1.4333 10 6 6.8832 -2.8557 2.8031 11 6 8.1444 -3.7208 2.7576 12 7 8.5840 -4.0155 4.1236 13 6 8.0862 -5.2093 4.8117 14 6 9.4462 -3.1886 4.7473 15 8 9.8587 -2.2005 4.1776 16 6 9.8979 -3.4915 6.1528 17 16 11.0447 -2.2060 6.7082 18 6 11.4021 -2.7948 8.3300 19 1 10.9431 -3.7047 8.6875 20 6 12.2728 -2.0888 9.1484 21 7 12.5403 -2.5290 10.3598 22 14 13.0663 -0.5147 8.5303 23 1 12.2011 0.6430 8.8719 24 1 14.3952 -0.3455 9.1710 25 1 13.2332 -0.5900 7.0567 26 7 2.2666 -1.0637 0.0005 27 1 -0.3634 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8903 0.5135 30 1 5.0075 1.8906 -1.0276 31 1 4.4557 2.5889 0.5139 32 1 5.5598 1.1928 0.5139 33 1 4.5988 -2.3812 -0.5151 34 1 5.6055 -0.9132 -0.5208 35 1 5.4376 -0.7885 1.9499 36 1 4.4309 -2.2565 1.9557 37 1 7.1808 -2.1206 0.9036 38 1 7.1011 -1.9235 3.3242 39 1 6.0939 -3.3910 3.3308 40 1 7.9269 -4.6530 2.2364 41 1 8.9336 -3.1850 2.2299 42 1 8.7523 -6.0485 4.6112 43 1 8.0510 -5.0219 5.8849 44 1 7.0852 -5.4456 4.4511 45 1 9.0325 -3.5177 6.8149 46 1 10.4000 -4.4588 6.1725 47 1 13.1490 -2.0357 10.9316 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663821698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:23 Heat of formation + Delta-G solvation = 26.238792 kcal Electronic energy + Delta-G solvation = -26047.498456 eV Core-core repulsion = 22199.460614 eV Total energy + Delta-G solvation = -3848.037843 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.19298 -40.94397 -38.22123 -36.71181 -35.34014 -34.68319 -33.74827 -32.30256 -30.94831 -30.05601 -29.01687 -27.87593 -27.73806 -26.69064 -23.87104 -23.38273 -21.76982 -21.49905 -20.68522 -19.57899 -18.20048 -17.93386 -17.46098 -17.32264 -17.07210 -16.78899 -16.75666 -15.85798 -15.63593 -15.37727 -15.16110 -14.99919 -14.83600 -14.50829 -14.36307 -14.24611 -14.09975 -13.73481 -13.67935 -13.62548 -13.37794 -13.37127 -13.22987 -13.09521 -13.02289 -12.82819 -12.76305 -12.67294 -12.40508 -12.03198 -11.86929 -11.18360 -11.08807 -10.99302 -10.81429 -10.54668 -10.37164 -9.79914 -9.66720 -9.01760 -8.52689 -6.23930 0.50586 0.96435 1.21425 1.30232 1.44917 1.49097 1.53401 1.79729 2.04309 2.23775 2.66414 2.85550 3.05132 3.12377 3.38528 3.57760 3.70756 3.79265 3.88710 4.00889 4.10690 4.14334 4.20158 4.29610 4.43143 4.46070 4.48104 4.51747 4.58176 4.62641 4.66543 4.70272 4.76457 4.86076 4.91178 4.93151 4.94642 4.97522 5.29114 5.43213 5.46649 5.69206 5.69776 5.83275 6.10017 6.18819 6.24708 6.92362 7.05175 7.05309 8.59618 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016101 B = 0.001759 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.640405 B =15911.917148 C =16739.789623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.206 3.794 3 N -0.576 5.576 4 C 0.276 3.724 5 C -0.078 4.078 6 N -0.380 5.380 7 C 0.132 3.868 8 C 0.056 3.944 9 N -0.672 5.672 10 C 0.055 3.945 11 C 0.122 3.878 12 N -0.609 5.609 13 C 0.069 3.931 14 C 0.532 3.468 15 O -0.559 6.559 16 C -0.108 4.108 17 S -0.176 6.176 18 C -0.530 4.530 19 H 0.062 0.938 20 C 0.046 3.954 21 N -0.916 5.916 22 Si 0.914 3.086 23 H -0.263 1.263 24 H -0.259 1.259 25 H -0.236 1.236 26 N -0.350 5.350 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.033 0.967 36 H 0.064 0.936 37 H 0.355 0.645 38 H 0.013 0.987 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.100 0.900 45 H 0.110 0.890 46 H 0.111 0.889 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.434 0.132 -24.696 31.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.076 4.076 3 N -0.306 5.306 4 C 0.000 4.000 5 C -0.137 4.137 6 N -0.171 5.171 7 C 0.010 3.990 8 C -0.075 4.075 9 N -0.304 5.304 10 C -0.076 4.076 11 C -0.001 4.001 12 N -0.343 5.343 13 C -0.073 4.073 14 C 0.319 3.681 15 O -0.438 6.438 16 C -0.259 4.259 17 S 0.051 5.949 18 C -0.677 4.677 19 H 0.080 0.920 20 C -0.160 4.160 21 N -0.554 5.554 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.160 1.160 26 N -0.179 5.179 27 H 0.115 0.885 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.131 0.869 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.128 0.872 34 H 0.147 0.853 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.174 0.826 38 H 0.031 0.969 39 H 0.096 0.904 40 H 0.133 0.867 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.118 0.882 45 H 0.128 0.872 46 H 0.129 0.871 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.405 0.499 -25.433 31.994 hybrid contribution 0.524 0.127 1.633 1.720 sum -18.881 0.626 -23.799 30.386 Atomic orbital electron populations 1.20226 0.81829 1.04757 1.04748 1.24990 0.99773 0.85507 0.97285 1.70390 1.00967 1.31717 1.27531 1.25123 0.95901 0.84364 0.94576 1.20621 0.90129 0.96896 1.06078 1.50396 1.05877 1.05828 1.55019 1.21859 0.82428 0.96873 0.97804 1.22097 0.93610 0.95879 0.95919 1.60278 1.07558 1.48948 1.13646 1.22168 0.97522 0.98243 0.89631 1.21416 0.95342 1.01537 0.81794 1.47784 1.44747 1.25668 1.16073 1.22125 1.01342 0.85834 0.97970 1.20030 0.78464 0.82550 0.87069 1.90667 1.57199 1.28667 1.67238 1.23300 1.02752 1.03279 0.96547 1.84665 1.57841 1.36073 1.16365 1.22451 1.32766 1.13425 0.99072 0.91997 1.25566 0.95591 1.00624 0.94179 1.70020 1.35818 1.40979 1.08572 0.85867 0.79321 0.79805 0.81377 1.18746 1.18311 1.16003 1.77959 0.87788 1.23491 1.28636 0.88548 0.89210 0.88914 0.86882 0.88132 0.88395 0.87202 0.85324 0.94882 0.91739 0.82599 0.96867 0.90354 0.86733 0.91028 0.90741 0.90932 0.88188 0.87205 0.87066 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.74 10.51 71.23 0.75 0.00 16 2 C 0.21 4.45 8.14 138.63 1.13 5.58 16 3 N -0.58 -13.03 11.19 -179.73 -2.01 -15.04 16 4 C 0.28 4.93 7.98 138.23 1.10 6.03 16 5 C -0.08 -0.69 10.01 71.24 0.71 0.02 16 6 N -0.38 -6.85 3.64 -338.48 -1.23 -8.08 16 7 C 0.13 1.47 6.39 86.38 0.55 2.03 16 8 C 0.06 0.76 6.01 86.31 0.52 1.27 16 9 N -0.67 -8.57 6.50 -513.89 -3.34 -11.91 16 10 C 0.05 0.95 6.01 86.30 0.52 1.47 16 11 C 0.12 2.19 5.67 86.38 0.49 2.68 16 12 N -0.61 -13.85 2.87 -846.76 -2.43 -16.28 16 13 C 0.07 1.06 10.24 127.77 1.31 2.37 16 14 C 0.53 17.76 7.69 87.66 0.67 18.43 16 15 O -0.56 -22.80 15.44 -3.05 -0.05 -22.85 16 16 C -0.11 -4.01 4.71 71.24 0.34 -3.67 16 17 S -0.18 -8.78 18.55 -56.49 -1.05 -9.83 16 18 C -0.53 -30.56 10.04 67.95 0.68 -29.88 16 19 H 0.06 3.77 8.03 -2.91 -0.02 3.74 16 20 C 0.05 2.67 5.50 84.86 0.47 3.14 16 21 N -0.92 -55.35 13.97 21.65 0.30 -55.04 16 22 Si 0.91 44.52 27.74 68.60 1.90 46.42 16 23 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 25 H -0.24 -11.44 6.74 99.48 0.67 -10.77 16 26 N -0.35 -8.00 12.70 -51.33 -0.65 -8.66 16 27 H 0.10 0.97 8.14 -2.39 -0.02 0.96 16 28 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.10 0.56 7.77 -2.39 -0.02 0.54 16 33 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.13 0.64 7.73 -2.39 -0.02 0.62 16 35 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.35 3.56 8.73 -89.69 -0.78 2.77 16 38 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 40 H 0.11 1.44 8.07 -2.39 -0.02 1.42 16 41 H 0.07 1.52 7.42 -2.38 -0.02 1.50 16 42 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.07 1.22 6.44 -2.39 -0.02 1.20 16 44 H 0.10 1.01 8.07 -2.39 -0.02 0.99 16 45 H 0.11 3.78 7.40 -2.40 -0.02 3.76 16 46 H 0.11 3.82 8.11 -2.40 -0.02 3.80 16 47 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -81.49 408.08 0.83 -80.66 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.15 Total: 11.13 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 9.24 Total: 9.49 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -9.37 Total: -115.02 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.05 Total: -22.85 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.90 Total: 46.42 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.05 Total: -9.83 kcal Total: -81.49 0.83 -80.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663821698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.895 kcal (2) G-P(sol) polarization free energy of solvation -81.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds