Wall clock time and date at job start Sat Apr 11 2020 06:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30832 * 125.96182 * 2 1 4 4 C 1.33241 * 109.83006 * 180.11772 * 3 2 1 5 5 C 1.50696 * 125.52792 * 179.85650 * 4 3 2 6 6 H 1.09001 * 109.46837 * 344.71470 * 5 4 3 7 7 C 1.53002 * 109.47317 * 104.71918 * 5 4 3 8 8 N 1.46905 * 109.46893 * 224.71815 * 5 4 3 9 9 C 1.46896 * 111.00102 * 154.99792 * 8 5 4 10 10 C 1.52997 * 109.47453 * 179.97438 * 9 8 5 11 11 H 1.08999 * 109.47488 * 305.00272 * 10 9 8 12 12 C 1.53007 * 109.46763 * 65.00195 * 10 9 8 13 13 C 1.53001 * 109.47519 * 184.99832 * 10 9 8 14 14 N 1.46493 * 109.47084 * 175.00001 * 13 10 9 15 15 C 1.34784 * 119.99864 * 180.02562 * 14 13 10 16 16 O 1.21283 * 119.99649 * 359.72839 * 15 14 13 17 17 C 1.50694 * 119.99988 * 179.72721 * 15 14 13 18 18 S 1.81005 * 109.47244 * 179.97438 * 17 15 14 19 19 C 1.76192 * 100.00090 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00308 * 0.02562 * 19 18 17 21 21 C 1.38797 * 119.99747 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00171 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99848 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47396 * 59.99622 * 23 21 19 25 25 H 1.48504 * 109.46972 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46804 * 299.99684 * 23 21 19 27 27 N 1.30715 * 108.94504 * 359.59188 * 4 3 2 28 28 N 1.34427 * 125.96095 * 179.66001 * 2 1 3 29 29 H 0.96997 * 126.82171 * 0.02562 * 28 2 1 30 30 H 1.08999 * 109.47432 * 270.30855 * 1 2 3 31 31 H 1.09001 * 109.47026 * 30.30481 * 1 2 3 32 32 H 1.08997 * 109.47242 * 150.30670 * 1 2 3 33 33 H 1.09001 * 109.46699 * 299.99689 * 7 5 4 34 34 H 1.08996 * 109.47102 * 59.99893 * 7 5 4 35 35 H 1.08999 * 109.46641 * 179.97438 * 7 5 4 36 36 H 1.00900 * 111.00200 * 31.04617 * 8 5 4 37 37 H 1.09007 * 109.46844 * 59.99731 * 9 8 5 38 38 H 1.09002 * 109.47406 * 300.00055 * 9 8 5 39 39 H 1.08996 * 109.46781 * 299.99928 * 12 10 9 40 40 H 1.08999 * 109.47056 * 59.99813 * 12 10 9 41 41 H 1.08995 * 109.47177 * 180.02562 * 12 10 9 42 42 H 1.09007 * 109.46593 * 55.00258 * 13 10 9 43 43 H 1.09006 * 109.47216 * 295.00716 * 13 10 9 44 44 H 0.97000 * 120.00740 * 359.72857 * 14 13 10 45 45 H 1.08998 * 109.47224 * 299.99701 * 17 15 14 46 46 H 1.09002 * 109.47054 * 60.00213 * 17 15 14 47 47 H 0.97000 * 119.99868 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6888 -0.0026 5 6 4.7372 1.6236 -0.0065 6 1 4.4066 2.6262 -0.2778 7 6 5.3679 1.6542 1.3872 8 7 5.7295 1.1542 -0.9828 9 6 6.5683 2.2635 -1.4558 10 6 7.5874 1.7368 -2.4681 11 1 8.1563 0.9219 -2.0205 12 6 6.8547 1.2252 -3.7101 13 6 8.5404 2.8653 -2.8668 14 7 9.5874 2.3337 -3.7428 15 6 10.5455 3.1521 -4.2213 16 8 10.5380 4.3295 -3.9305 17 6 11.6260 2.6040 -5.1174 18 16 12.7526 3.9394 -5.5904 19 6 13.8812 3.0430 -6.6038 20 1 13.7415 1.9838 -6.7615 21 6 14.9500 3.6983 -7.1996 22 7 15.1201 4.9894 -7.0079 23 14 16.1462 2.7481 -8.2747 24 1 15.4136 2.1446 -9.4167 25 1 17.1901 3.6708 -8.7888 26 1 16.7857 1.6736 -7.4735 27 7 3.6194 -0.6168 0.0045 28 7 2.2964 -1.0881 0.0065 29 1 2.0093 -2.0145 0.0116 30 1 -0.3634 0.0055 1.0276 31 1 -0.3633 0.8872 -0.5186 32 1 -0.3633 -0.8927 -0.5090 33 1 4.6316 2.0025 2.1115 34 1 5.6985 0.6516 1.6584 35 1 6.2231 2.3300 1.3841 36 1 5.2822 0.6842 -1.7556 37 1 7.0931 2.7083 -0.6102 38 1 5.9401 3.0172 -1.9306 39 1 6.1758 0.4213 -3.4261 40 1 6.2858 2.0401 -4.1577 41 1 7.5807 0.8496 -4.4312 42 1 8.9960 3.2893 -1.9719 43 1 7.9847 3.6410 -3.3939 44 1 9.5936 1.3920 -3.9751 45 1 12.1812 1.8309 -4.5862 46 1 11.1737 2.1766 -6.0123 47 1 15.8672 5.4472 -7.4240 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666513941.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:26 Heat of formation + Delta-G solvation = 33.516390 kcal Electronic energy + Delta-G solvation = -25814.403927 eV Core-core repulsion = 21966.681665 eV Total energy + Delta-G solvation = -3847.722262 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.66797 -39.31089 -38.03593 -35.86201 -33.58906 -32.88411 -32.40875 -32.35125 -30.06724 -29.05166 -28.49495 -26.86712 -25.54687 -25.12060 -23.60928 -21.56004 -20.65090 -20.35631 -20.08238 -18.40904 -17.79716 -16.73362 -16.36870 -16.17574 -16.05406 -15.46311 -15.11823 -14.77845 -14.76117 -14.49647 -14.22381 -13.92500 -13.67363 -13.55100 -13.35974 -13.22876 -12.93682 -12.84554 -12.57550 -12.52792 -12.34031 -12.12305 -11.93112 -11.63563 -11.28058 -11.05987 -11.02199 -11.01297 -10.99943 -10.74024 -10.58088 -10.52160 -9.96954 -9.79386 -9.35063 -9.03587 -8.86207 -8.79231 -8.20450 -6.46676 -6.18713 -3.89102 1.07894 2.11336 2.32307 3.05542 3.16256 3.25597 3.25644 3.30177 3.36152 3.69504 3.87803 4.06404 4.23397 4.27967 4.62361 4.66309 4.68894 4.72303 4.75360 4.95259 5.03555 5.13839 5.16272 5.20416 5.23668 5.32628 5.40679 5.42845 5.52551 5.58415 5.67300 5.72646 5.73243 5.79698 5.85013 5.93692 5.96887 6.03074 6.10522 6.18227 6.47746 6.59884 6.70315 6.93879 7.61012 7.62006 7.77430 8.37830 8.67744 9.26417 10.88670 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.034531 B = 0.001428 C = 0.001403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.677672 B =19603.379685 C =19948.804089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.281 3.719 3 N -0.537 5.537 4 C 0.223 3.777 5 C 0.180 3.820 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.675 5.675 9 C 0.065 3.935 10 C -0.100 4.100 11 H 0.089 0.911 12 C -0.151 4.151 13 C 0.127 3.873 14 N -0.737 5.737 15 C 0.531 3.469 16 O -0.519 6.519 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 N -0.288 5.288 28 N -0.485 5.485 29 H 0.440 0.560 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.345 0.655 37 H 0.081 0.919 38 H 0.038 0.962 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.398 0.602 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.173 -13.839 15.593 37.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.003 3.997 3 N -0.267 5.267 4 C -0.060 4.060 5 C 0.068 3.932 6 H 0.092 0.908 7 C -0.194 4.194 8 N -0.309 5.309 9 C -0.064 4.064 10 C -0.119 4.119 11 H 0.107 0.893 12 C -0.209 4.209 13 C 0.002 3.998 14 N -0.392 5.392 15 C 0.317 3.683 16 O -0.393 6.393 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.199 1.199 27 N -0.117 5.117 28 N -0.203 5.203 29 H 0.286 0.714 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.164 0.836 37 H 0.100 0.900 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.232 0.768 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -30.057 -11.904 16.525 36.307 hybrid contribution -0.277 -2.723 -1.721 3.233 sum -30.335 -14.627 14.803 36.787 Atomic orbital electron populations 1.20414 0.83531 1.05140 1.04687 1.24426 0.96686 0.82855 0.95773 1.70369 1.01304 1.29637 1.25409 1.24249 0.93005 0.90340 0.98446 1.19767 0.84698 0.93410 0.95336 0.90832 1.21784 1.00670 1.03375 0.93598 1.60572 1.23937 1.27880 1.18501 1.21998 0.94811 0.91798 0.97837 1.21348 0.96232 0.98586 0.95779 0.89310 1.21889 1.00561 1.01060 0.97363 1.21237 0.88554 0.95588 0.94378 1.45982 1.28648 1.12517 1.52022 1.20292 0.81659 0.86313 0.80034 1.90700 1.74498 1.16198 1.57917 1.23530 0.99722 1.06257 1.00906 1.85387 1.26493 1.08822 1.62653 1.22836 1.13630 0.97239 1.34757 0.90994 1.24982 0.97146 0.95062 0.96322 1.70009 1.29943 1.08156 1.42206 0.86233 0.79863 0.79346 0.80106 1.19967 1.20812 1.19940 1.78138 0.95908 1.12196 1.25417 1.48123 1.04542 1.10128 1.57554 0.71393 0.88890 0.88249 0.89767 0.92291 0.91396 0.91187 0.83557 0.90026 0.94389 0.92538 0.92543 0.92049 0.91488 0.91656 0.76836 0.89237 0.89296 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.13 10.51 36.01 0.38 0.24 16 2 C 0.28 1.78 8.24 -155.70 -1.28 0.50 16 3 N -0.54 -5.10 11.19 -8.16 -0.09 -5.19 16 4 C 0.22 2.17 6.64 -156.85 -1.04 1.13 16 5 C 0.18 1.54 3.16 -68.86 -0.22 1.32 16 6 H 0.07 0.62 7.80 -51.93 -0.41 0.22 16 7 C -0.14 -1.07 9.40 37.16 0.35 -0.72 16 8 N -0.68 -5.67 6.29 -107.95 -0.68 -6.35 16 9 C 0.07 0.52 4.94 -3.83 -0.02 0.50 16 10 C -0.10 -0.86 2.63 -90.62 -0.24 -1.10 16 11 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 12 C -0.15 -1.23 8.84 37.16 0.33 -0.90 16 13 C 0.13 1.48 5.06 -4.04 -0.02 1.46 16 14 N -0.74 -9.97 5.28 -60.29 -0.32 -10.29 16 15 C 0.53 10.09 7.85 -10.98 -0.09 10.01 16 16 O -0.52 -12.01 15.86 5.56 0.09 -11.92 16 17 C -0.15 -3.15 6.16 36.00 0.22 -2.93 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 19 C -0.54 -15.45 9.50 30.94 0.29 -15.16 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 22 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 23 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 27 N -0.29 -2.77 12.78 32.42 0.41 -2.35 16 28 N -0.48 -2.99 7.45 32.62 0.24 -2.75 16 29 H 0.44 1.13 8.96 -182.34 -1.63 -0.51 16 30 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 31 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.50 7.45 -51.93 -0.39 0.11 16 36 H 0.34 3.00 6.60 -39.29 -0.26 2.74 16 37 H 0.08 0.64 7.44 -51.92 -0.39 0.26 16 38 H 0.04 0.30 8.06 -51.93 -0.42 -0.12 16 39 H 0.06 0.42 6.68 -51.93 -0.35 0.08 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.51 7.19 -51.93 -0.37 0.13 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.40 4.29 7.66 -40.82 -0.31 3.97 16 45 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 46 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 47 H 0.27 7.60 8.31 -40.82 -0.34 7.27 16 LS Contribution 405.43 15.07 6.11 6.11 Total: -1.00 -37.75 405.43 -10.88 -48.64 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -8.72 Total: 0.69 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -1.43 Total: -3.59 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.30 Total: -52.60 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.92 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.75 -10.88 -48.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666513941.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.152 kcal (2) G-P(sol) polarization free energy of solvation -37.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds