Wall clock time and date at job start Sat Apr 11 2020 06:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30832 * 125.96182 * 2 1 4 4 C 1.33241 * 109.83006 * 180.11772 * 3 2 1 5 5 C 1.50696 * 125.52792 * 179.85650 * 4 3 2 6 6 H 1.09001 * 109.46837 * 344.71470 * 5 4 3 7 7 C 1.53002 * 109.47317 * 104.71918 * 5 4 3 8 8 N 1.46905 * 109.46893 * 224.71815 * 5 4 3 9 9 C 1.46896 * 111.00102 * 154.99792 * 8 5 4 10 10 C 1.52997 * 109.47453 * 179.97438 * 9 8 5 11 11 H 1.08999 * 109.47488 * 305.00272 * 10 9 8 12 12 C 1.53007 * 109.46763 * 65.00195 * 10 9 8 13 13 C 1.53001 * 109.47519 * 184.99832 * 10 9 8 14 14 N 1.46493 * 109.47084 * 175.00001 * 13 10 9 15 15 C 1.34784 * 119.99864 * 180.02562 * 14 13 10 16 16 O 1.21283 * 119.99649 * 359.72839 * 15 14 13 17 17 C 1.50694 * 119.99988 * 179.72721 * 15 14 13 18 18 S 1.81005 * 109.47244 * 179.97438 * 17 15 14 19 19 C 1.76192 * 100.00090 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00308 * 0.02562 * 19 18 17 21 21 C 1.38797 * 119.99747 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00171 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99848 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47396 * 59.99622 * 23 21 19 25 25 H 1.48504 * 109.46972 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46804 * 299.99684 * 23 21 19 27 27 N 1.30715 * 108.94504 * 359.59188 * 4 3 2 28 28 N 1.34427 * 125.96095 * 179.66001 * 2 1 3 29 29 H 0.96997 * 126.82171 * 0.02562 * 28 2 1 30 30 H 1.08999 * 109.47432 * 270.30855 * 1 2 3 31 31 H 1.09001 * 109.47026 * 30.30481 * 1 2 3 32 32 H 1.08997 * 109.47242 * 150.30670 * 1 2 3 33 33 H 1.09001 * 109.46699 * 299.99689 * 7 5 4 34 34 H 1.08996 * 109.47102 * 59.99893 * 7 5 4 35 35 H 1.08999 * 109.46641 * 179.97438 * 7 5 4 36 36 H 1.00900 * 111.00200 * 31.04617 * 8 5 4 37 37 H 1.09007 * 109.46844 * 59.99731 * 9 8 5 38 38 H 1.09002 * 109.47406 * 300.00055 * 9 8 5 39 39 H 1.08996 * 109.46781 * 299.99928 * 12 10 9 40 40 H 1.08999 * 109.47056 * 59.99813 * 12 10 9 41 41 H 1.08995 * 109.47177 * 180.02562 * 12 10 9 42 42 H 1.09007 * 109.46593 * 55.00258 * 13 10 9 43 43 H 1.09006 * 109.47216 * 295.00716 * 13 10 9 44 44 H 0.97000 * 120.00740 * 359.72857 * 14 13 10 45 45 H 1.08998 * 109.47224 * 299.99701 * 17 15 14 46 46 H 1.09002 * 109.47054 * 60.00213 * 17 15 14 47 47 H 0.97000 * 119.99868 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6888 -0.0026 5 6 4.7372 1.6236 -0.0065 6 1 4.4066 2.6262 -0.2778 7 6 5.3679 1.6542 1.3872 8 7 5.7295 1.1542 -0.9828 9 6 6.5683 2.2635 -1.4558 10 6 7.5874 1.7368 -2.4681 11 1 8.1563 0.9219 -2.0205 12 6 6.8547 1.2252 -3.7101 13 6 8.5404 2.8653 -2.8668 14 7 9.5874 2.3337 -3.7428 15 6 10.5455 3.1521 -4.2213 16 8 10.5380 4.3295 -3.9305 17 6 11.6260 2.6040 -5.1174 18 16 12.7526 3.9394 -5.5904 19 6 13.8812 3.0430 -6.6038 20 1 13.7415 1.9838 -6.7615 21 6 14.9500 3.6983 -7.1996 22 7 15.1201 4.9894 -7.0079 23 14 16.1462 2.7481 -8.2747 24 1 15.4136 2.1446 -9.4167 25 1 17.1901 3.6708 -8.7888 26 1 16.7857 1.6736 -7.4735 27 7 3.6194 -0.6168 0.0045 28 7 2.2964 -1.0881 0.0065 29 1 2.0093 -2.0145 0.0116 30 1 -0.3634 0.0055 1.0276 31 1 -0.3633 0.8872 -0.5186 32 1 -0.3633 -0.8927 -0.5090 33 1 4.6316 2.0025 2.1115 34 1 5.6985 0.6516 1.6584 35 1 6.2231 2.3300 1.3841 36 1 5.2822 0.6842 -1.7556 37 1 7.0931 2.7083 -0.6102 38 1 5.9401 3.0172 -1.9306 39 1 6.1758 0.4213 -3.4261 40 1 6.2858 2.0401 -4.1577 41 1 7.5807 0.8496 -4.4312 42 1 8.9960 3.2893 -1.9719 43 1 7.9847 3.6410 -3.3939 44 1 9.5936 1.3920 -3.9751 45 1 12.1812 1.8309 -4.5862 46 1 11.1737 2.1766 -6.0123 47 1 15.8672 5.4472 -7.4240 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666513941.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:25 Heat of formation + Delta-G solvation = 4.791864 kcal Electronic energy + Delta-G solvation = -25815.649516 eV Core-core repulsion = 21966.681665 eV Total energy + Delta-G solvation = -3848.967851 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.21693 -40.68168 -38.86497 -36.79305 -34.58792 -34.50220 -33.38577 -33.11080 -31.16715 -30.14240 -28.87564 -27.80561 -27.52273 -26.03666 -24.32986 -22.07384 -21.78294 -21.25338 -20.90884 -19.78212 -18.92167 -17.83520 -17.43369 -17.15565 -16.86819 -16.80565 -16.67935 -16.05987 -15.74116 -15.58100 -15.04224 -15.00367 -14.66741 -14.43985 -14.22356 -13.96848 -13.80338 -13.74166 -13.64028 -13.29929 -13.16445 -13.15024 -12.86193 -12.84506 -12.67698 -12.62943 -12.45258 -12.03748 -11.80661 -11.76669 -11.71376 -11.15916 -11.12690 -11.11900 -10.93963 -10.52002 -10.26806 -10.08520 -9.50103 -8.65565 -8.33342 -6.11603 0.55231 1.28001 1.44771 1.47753 1.57676 1.63798 1.69589 1.73763 2.26681 2.30732 2.77367 3.00685 3.17409 3.34044 3.60649 3.84741 3.84843 3.91676 3.97417 4.06445 4.24149 4.31022 4.32232 4.51202 4.52628 4.58737 4.66603 4.68768 4.69081 4.77539 4.82207 4.89197 4.96660 4.99378 5.04366 5.19464 5.23741 5.26316 5.34155 5.35942 5.42578 5.49381 5.91059 6.18489 6.20686 6.27493 6.52878 7.05651 7.07747 7.26808 8.75673 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.034531 B = 0.001428 C = 0.001403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.677672 B =19603.379685 C =19948.804089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.286 3.714 3 N -0.573 5.573 4 C 0.212 3.788 5 C 0.180 3.820 6 H 0.072 0.928 7 C -0.129 4.129 8 N -0.674 5.674 9 C 0.068 3.932 10 C -0.085 4.085 11 H 0.093 0.907 12 C -0.149 4.149 13 C 0.127 3.873 14 N -0.710 5.710 15 C 0.533 3.467 16 O -0.567 6.567 17 C -0.130 4.130 18 S -0.152 6.152 19 C -0.549 4.549 20 H 0.083 0.917 21 C 0.015 3.985 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.262 1.262 25 H -0.279 1.279 26 H -0.262 1.262 27 N -0.317 5.317 28 N -0.477 5.477 29 H 0.455 0.545 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.343 0.657 37 H 0.084 0.916 38 H 0.039 0.961 39 H 0.065 0.935 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.415 0.585 45 H 0.110 0.890 46 H 0.109 0.891 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.536 -16.537 15.420 39.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.008 3.992 3 N -0.304 5.304 4 C -0.071 4.071 5 C 0.068 3.932 6 H 0.090 0.910 7 C -0.188 4.188 8 N -0.307 5.307 9 C -0.061 4.061 10 C -0.104 4.104 11 H 0.111 0.889 12 C -0.207 4.207 13 C 0.003 3.997 14 N -0.364 5.364 15 C 0.318 3.682 16 O -0.446 6.446 17 C -0.281 4.281 18 S 0.076 5.924 19 C -0.696 4.696 20 H 0.101 0.899 21 C -0.190 4.190 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.187 1.187 25 H -0.204 1.204 26 H -0.187 1.187 27 N -0.147 5.147 28 N -0.197 5.197 29 H 0.304 0.696 30 H 0.127 0.873 31 H 0.117 0.883 32 H 0.130 0.870 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.163 0.837 37 H 0.102 0.898 38 H 0.057 0.943 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.252 0.748 45 H 0.128 0.872 46 H 0.128 0.872 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -31.472 -14.681 16.368 38.392 hybrid contribution -0.040 -1.953 -1.583 2.515 sum -31.512 -16.634 14.785 38.579 Atomic orbital electron populations 1.20647 0.80275 1.06518 1.06052 1.25214 0.98208 0.82088 0.93673 1.70363 1.01595 1.31352 1.27128 1.24378 0.93449 0.90545 0.98726 1.19769 0.84678 0.93235 0.95507 0.91005 1.21719 1.00874 1.02795 0.93367 1.60563 1.23948 1.27824 1.18398 1.21950 0.94652 0.91762 0.97760 1.21196 0.95660 0.97318 0.96207 0.88852 1.21875 1.00652 1.01211 0.96935 1.21358 0.88228 0.96637 0.93482 1.45730 1.27236 1.12812 1.50637 1.20058 0.82215 0.85970 0.79923 1.90690 1.75777 1.18265 1.59824 1.23376 0.98803 1.03603 1.02336 1.85569 1.29272 1.14118 1.63485 1.23185 1.13940 0.97688 1.34819 0.89911 1.26119 0.99157 0.96043 0.97706 1.70179 1.30843 1.10206 1.43539 0.85011 0.77053 0.77861 0.78109 1.18670 1.20367 1.18659 1.78028 0.97923 1.12307 1.26428 1.48058 1.03555 1.11055 1.57036 0.69620 0.87330 0.88255 0.86973 0.92140 0.92506 0.90495 0.83718 0.89807 0.94251 0.91628 0.92891 0.91887 0.92088 0.92407 0.74772 0.87223 0.87232 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.08 10.51 71.24 0.75 0.67 16 2 C 0.29 3.23 8.24 138.23 1.14 4.37 16 3 N -0.57 -10.59 11.19 -179.73 -2.01 -12.60 16 4 C 0.21 4.06 6.64 138.63 0.92 4.98 16 5 C 0.18 3.03 3.16 44.17 0.14 3.17 16 6 H 0.07 1.21 7.80 -2.39 -0.02 1.19 16 7 C -0.13 -1.99 9.40 71.98 0.68 -1.31 16 8 N -0.67 -10.72 6.29 -495.44 -3.11 -13.84 16 9 C 0.07 1.02 4.94 86.30 0.43 1.44 16 10 C -0.08 -1.31 2.63 -10.79 -0.03 -1.34 16 11 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 12 C -0.15 -2.13 8.84 71.98 0.64 -1.50 16 13 C 0.13 2.82 5.06 86.38 0.44 3.26 16 14 N -0.71 -18.04 5.28 -463.05 -2.45 -20.48 16 15 C 0.53 19.93 7.85 87.65 0.69 20.61 16 16 O -0.57 -26.72 15.86 -3.04 -0.05 -26.77 16 17 C -0.13 -5.21 6.16 71.23 0.44 -4.77 16 18 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 19 C -0.55 -31.61 9.50 67.95 0.65 -30.97 16 20 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 21 C 0.01 0.83 5.49 84.86 0.47 1.30 16 22 N -0.91 -56.43 13.22 21.65 0.29 -56.14 16 23 Si 1.00 43.82 29.55 68.60 2.03 45.85 16 24 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 25 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 26 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 27 N -0.32 -5.92 12.78 -51.34 -0.66 -6.58 16 28 N -0.48 -5.30 7.45 -50.71 -0.38 -5.67 16 29 H 0.46 1.61 8.96 -213.10 -1.91 -0.30 16 30 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 31 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.11 -0.49 8.14 -2.39 -0.02 -0.51 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.08 1.05 7.45 -2.39 -0.02 1.03 16 36 H 0.34 5.63 6.60 -89.69 -0.59 5.03 16 37 H 0.08 1.23 7.44 -2.38 -0.02 1.22 16 38 H 0.04 0.59 8.06 -2.39 -0.02 0.57 16 39 H 0.06 0.85 6.68 -2.39 -0.02 0.83 16 40 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.06 0.88 7.19 -2.39 -0.02 0.87 16 42 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 43 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 44 H 0.41 7.81 7.66 -92.71 -0.71 7.10 16 45 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 46 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 47 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -84.26 405.43 -2.37 -86.63 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -2.21 Total: 19.36 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 7.33 Total: -0.08 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -8.32 Total: -115.31 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.05 Total: -26.77 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -84.26 -2.37 -86.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666513941.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.421 kcal (2) G-P(sol) polarization free energy of solvation -84.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds