Wall clock time and date at job start Sat Apr 11 2020 06:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30834 * 125.95659 * 2 1 4 4 C 1.33241 * 109.82716 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.52704 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47316 * 15.00149 * 5 4 3 7 7 C 1.52999 * 109.47320 * 254.99765 * 5 4 3 8 8 N 1.46906 * 109.47026 * 134.99756 * 5 4 3 9 9 C 1.46893 * 111.00055 * 205.00055 * 8 5 4 10 10 C 1.53003 * 109.47002 * 180.02562 * 9 8 5 11 11 H 1.08996 * 109.47501 * 54.99964 * 10 9 8 12 12 C 1.53008 * 109.46750 * 294.99502 * 10 9 8 13 13 C 1.53001 * 109.47003 * 175.00147 * 10 9 8 14 14 N 1.46500 * 109.47101 * 184.99652 * 13 10 9 15 15 C 1.34780 * 119.99822 * 179.97438 * 14 13 10 16 16 O 1.21281 * 120.00228 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99860 * 179.97438 * 15 14 13 18 18 S 1.80999 * 109.47216 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00055 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00169 * 0.02562 * 19 18 17 21 21 C 1.38802 * 120.00138 * 179.97438 * 19 18 17 22 22 N 1.31629 * 119.99645 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99850 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47629 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47028 * 120.00230 * 23 21 19 26 26 H 1.48507 * 109.46859 * 239.99791 * 23 21 19 27 27 N 1.30718 * 108.94820 * 359.97438 * 4 3 2 28 28 N 1.34428 * 125.96307 * 179.97438 * 2 1 3 29 29 H 0.96998 * 126.82131 * 0.02562 * 28 2 1 30 30 H 1.09005 * 109.47279 * 90.00387 * 1 2 3 31 31 H 1.09000 * 109.47450 * 210.00065 * 1 2 3 32 32 H 1.08997 * 109.47789 * 330.00215 * 1 2 3 33 33 H 1.08999 * 109.46771 * 59.99642 * 7 5 4 34 34 H 1.08994 * 109.47116 * 179.97438 * 7 5 4 35 35 H 1.08997 * 109.47240 * 300.00430 * 7 5 4 36 36 H 1.00892 * 111.00336 * 328.95928 * 8 5 4 37 37 H 1.09006 * 109.47169 * 299.99792 * 9 8 5 38 38 H 1.08993 * 109.47364 * 60.00111 * 9 8 5 39 39 H 1.08995 * 109.46562 * 60.00648 * 12 10 9 40 40 H 1.08997 * 109.46659 * 180.02562 * 12 10 9 41 41 H 1.08999 * 109.47133 * 300.00095 * 12 10 9 42 42 H 1.08998 * 109.47260 * 304.99459 * 13 10 9 43 43 H 1.08997 * 109.47502 * 64.99284 * 13 10 9 44 44 H 0.96999 * 119.99987 * 359.97438 * 14 13 10 45 45 H 1.08998 * 109.47065 * 300.00350 * 17 15 14 46 46 H 1.09002 * 109.46624 * 59.99968 * 17 15 14 47 47 H 0.97005 * 119.99677 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2752 1.0591 0.0000 4 6 3.5551 0.6889 0.0006 5 6 4.7371 1.6238 0.0002 6 1 4.4062 2.6279 0.2654 7 6 5.3691 1.6464 -1.3930 8 7 5.7284 1.1602 0.9802 9 6 6.5667 2.2722 1.4474 10 6 7.5849 1.7513 2.4638 11 1 8.1543 0.9339 2.0215 12 6 6.8511 1.2470 3.7081 13 6 8.5375 2.8822 2.8568 14 7 9.5837 2.3558 3.7370 15 6 10.5413 3.1769 4.2115 16 8 10.5367 4.3517 3.9103 17 6 11.6172 2.6355 5.1174 18 16 12.7442 3.9733 5.5822 19 6 13.8670 3.0847 6.6089 20 1 13.7251 2.0270 6.7754 21 6 14.9345 3.7436 7.2029 22 7 15.1077 5.0325 6.9995 23 14 16.1245 2.8015 8.2918 24 1 15.7111 1.3769 8.3604 25 1 17.4937 2.8934 7.7242 26 1 16.1144 3.3856 9.6572 27 7 3.6194 -0.6167 0.0015 28 7 2.2964 -1.0881 0.0005 29 1 2.0093 -2.0146 0.0006 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 4.6335 1.9904 -2.1201 34 1 6.2237 2.3229 -1.3933 35 1 5.7000 0.6423 -1.6582 36 1 5.2805 0.6946 1.7551 37 1 7.0924 2.7121 0.5998 38 1 5.9382 3.0286 1.9173 39 1 6.1725 0.4414 3.4280 40 1 7.5765 0.8764 4.4323 41 1 6.2818 2.0645 4.1504 42 1 8.9940 3.3010 1.9600 43 1 7.9814 3.6609 3.3788 44 1 9.5871 1.4163 3.9782 45 1 11.1604 2.2175 6.0144 46 1 12.1730 1.8563 4.5958 47 1 15.8540 5.4929 7.4143 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666513942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:28 Heat of formation + Delta-G solvation = 33.429759 kcal Electronic energy + Delta-G solvation = -25814.847225 eV Core-core repulsion = 21967.121206 eV Total energy + Delta-G solvation = -3847.726019 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.66744 -39.31160 -38.03641 -35.86251 -33.58913 -32.88431 -32.41154 -32.35189 -30.06809 -29.05212 -28.49469 -26.86808 -25.55082 -25.12213 -23.60939 -21.56006 -20.65088 -20.35661 -20.08319 -18.40923 -17.80088 -16.73365 -16.37078 -16.17773 -16.05353 -15.46175 -15.11909 -14.78246 -14.76189 -14.49925 -14.22369 -13.92796 -13.67389 -13.55220 -13.35957 -13.22901 -12.93723 -12.84715 -12.57564 -12.53167 -12.33983 -12.12238 -11.93160 -11.63642 -11.28124 -11.06766 -11.04106 -11.00907 -10.98878 -10.73052 -10.58263 -10.52084 -9.96987 -9.77786 -9.35097 -9.05347 -8.86236 -8.79291 -8.19756 -6.46843 -6.19395 -3.89461 1.07853 2.11274 2.32328 3.05515 3.16216 3.23345 3.25710 3.31199 3.37063 3.69507 3.87768 4.06401 4.22825 4.27951 4.62347 4.66294 4.68834 4.72334 4.75283 4.95207 5.03568 5.13847 5.15882 5.20310 5.23668 5.32576 5.40621 5.42809 5.52561 5.58340 5.67255 5.72580 5.73199 5.79647 5.85025 5.93622 5.96832 6.03038 6.10502 6.18197 6.47739 6.59859 6.70233 6.93914 7.60981 7.62375 7.77420 8.37948 8.67711 9.26127 10.88136 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.034498 B = 0.001428 C = 0.001403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.454671 B =19600.167134 C =19947.977241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.281 3.719 3 N -0.537 5.537 4 C 0.223 3.777 5 C 0.180 3.820 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.675 5.675 9 C 0.065 3.935 10 C -0.100 4.100 11 H 0.089 0.911 12 C -0.151 4.151 13 C 0.127 3.873 14 N -0.737 5.737 15 C 0.531 3.469 16 O -0.519 6.519 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 N -0.288 5.288 28 N -0.485 5.485 29 H 0.440 0.560 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.345 0.655 37 H 0.081 0.919 38 H 0.038 0.962 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.398 0.602 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.169 -13.952 -15.568 37.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.003 3.997 3 N -0.267 5.267 4 C -0.060 4.060 5 C 0.068 3.932 6 H 0.092 0.908 7 C -0.194 4.194 8 N -0.309 5.309 9 C -0.064 4.064 10 C -0.119 4.119 11 H 0.107 0.893 12 C -0.209 4.209 13 C 0.002 3.998 14 N -0.392 5.392 15 C 0.317 3.683 16 O -0.393 6.393 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 N -0.117 5.117 28 N -0.203 5.203 29 H 0.286 0.714 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.164 0.836 37 H 0.100 0.900 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.232 0.768 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -30.050 -12.033 -16.513 36.338 hybrid contribution -0.282 -2.689 1.748 3.219 sum -30.332 -14.722 -14.765 36.807 Atomic orbital electron populations 1.20413 0.83533 1.05150 1.04678 1.24424 0.96685 0.82857 0.95773 1.70372 1.01305 1.29632 1.25408 1.24251 0.93005 0.90341 0.98444 1.19767 0.84704 0.93440 0.95297 0.90833 1.21782 1.00670 1.03382 0.93590 1.60567 1.23982 1.28085 1.18259 1.21997 0.94820 0.91758 0.97867 1.21349 0.96235 0.98607 0.95756 0.89305 1.21890 1.00557 1.01086 0.97346 1.21236 0.88569 0.95618 0.94336 1.45982 1.28712 1.12712 1.51763 1.20292 0.81626 0.86233 0.80148 1.90700 1.74382 1.16369 1.57860 1.23530 0.99778 1.06281 1.00811 1.85394 1.26828 1.09088 1.62124 1.22919 1.13758 0.97510 1.34119 0.90891 1.24989 0.97151 0.95053 0.96387 1.70032 1.29864 1.08172 1.42235 0.86121 0.80108 0.79595 0.79690 1.19627 1.20570 1.20589 1.78140 0.95908 1.12187 1.25423 1.48123 1.04543 1.10126 1.57554 0.71392 0.88887 0.89770 0.88247 0.92298 0.91187 0.91390 0.83557 0.90025 0.94390 0.92529 0.92052 0.92546 0.91472 0.91671 0.76834 0.89293 0.89239 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.13 10.51 36.00 0.38 0.24 16 2 C 0.28 1.78 8.24 -155.70 -1.28 0.50 16 3 N -0.54 -5.10 11.19 -8.16 -0.09 -5.19 16 4 C 0.22 2.17 6.64 -156.85 -1.04 1.13 16 5 C 0.18 1.54 3.16 -68.86 -0.22 1.32 16 6 H 0.07 0.62 7.80 -51.93 -0.40 0.22 16 7 C -0.14 -1.06 9.40 37.16 0.35 -0.72 16 8 N -0.68 -5.67 6.29 -107.95 -0.68 -6.35 16 9 C 0.07 0.52 4.94 -3.83 -0.02 0.50 16 10 C -0.10 -0.86 2.63 -90.61 -0.24 -1.10 16 11 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 12 C -0.15 -1.23 8.84 37.16 0.33 -0.90 16 13 C 0.13 1.48 5.06 -4.04 -0.02 1.46 16 14 N -0.74 -9.97 5.28 -60.29 -0.32 -10.29 16 15 C 0.53 10.09 7.85 -10.98 -0.09 10.01 16 16 O -0.52 -12.01 15.86 5.56 0.09 -11.92 16 17 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 19 C -0.53 -15.40 9.50 30.94 0.29 -15.11 16 20 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.39 13.22 55.49 0.73 -25.65 16 23 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 N -0.29 -2.77 12.78 32.42 0.41 -2.35 16 28 N -0.48 -2.99 7.45 32.62 0.24 -2.75 16 29 H 0.44 1.13 8.96 -182.33 -1.63 -0.51 16 30 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 31 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 32 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.50 7.45 -51.93 -0.39 0.11 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.34 3.00 6.60 -39.30 -0.26 2.74 16 37 H 0.08 0.64 7.44 -51.93 -0.39 0.26 16 38 H 0.04 0.30 8.05 -51.93 -0.42 -0.12 16 39 H 0.06 0.42 6.68 -51.93 -0.35 0.08 16 40 H 0.06 0.51 7.18 -51.93 -0.37 0.13 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.40 4.29 7.65 -40.82 -0.31 3.97 16 45 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 46 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 47 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 405.42 15.07 6.11 6.11 Total: -1.00 -37.80 405.42 -10.88 -48.68 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -8.72 Total: 0.61 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -1.43 Total: -3.57 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.30 Total: -52.59 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.92 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.80 -10.88 -48.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666513942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.113 kcal (2) G-P(sol) polarization free energy of solvation -37.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds