Wall clock time and date at job start Sat Apr 11 2020 06:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30834 * 125.95659 * 2 1 4 4 C 1.33241 * 109.82716 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.52704 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47316 * 15.00149 * 5 4 3 7 7 C 1.52999 * 109.47320 * 254.99765 * 5 4 3 8 8 N 1.46906 * 109.47026 * 134.99756 * 5 4 3 9 9 C 1.46893 * 111.00055 * 205.00055 * 8 5 4 10 10 C 1.53003 * 109.47002 * 180.02562 * 9 8 5 11 11 H 1.08996 * 109.47501 * 54.99964 * 10 9 8 12 12 C 1.53008 * 109.46750 * 294.99502 * 10 9 8 13 13 C 1.53001 * 109.47003 * 175.00147 * 10 9 8 14 14 N 1.46500 * 109.47101 * 184.99652 * 13 10 9 15 15 C 1.34780 * 119.99822 * 179.97438 * 14 13 10 16 16 O 1.21281 * 120.00228 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99860 * 179.97438 * 15 14 13 18 18 S 1.80999 * 109.47216 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00055 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00169 * 0.02562 * 19 18 17 21 21 C 1.38802 * 120.00138 * 179.97438 * 19 18 17 22 22 N 1.31629 * 119.99645 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99850 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47629 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47028 * 120.00230 * 23 21 19 26 26 H 1.48507 * 109.46859 * 239.99791 * 23 21 19 27 27 N 1.30718 * 108.94820 * 359.97438 * 4 3 2 28 28 N 1.34428 * 125.96307 * 179.97438 * 2 1 3 29 29 H 0.96998 * 126.82131 * 0.02562 * 28 2 1 30 30 H 1.09005 * 109.47279 * 90.00387 * 1 2 3 31 31 H 1.09000 * 109.47450 * 210.00065 * 1 2 3 32 32 H 1.08997 * 109.47789 * 330.00215 * 1 2 3 33 33 H 1.08999 * 109.46771 * 59.99642 * 7 5 4 34 34 H 1.08994 * 109.47116 * 179.97438 * 7 5 4 35 35 H 1.08997 * 109.47240 * 300.00430 * 7 5 4 36 36 H 1.00892 * 111.00336 * 328.95928 * 8 5 4 37 37 H 1.09006 * 109.47169 * 299.99792 * 9 8 5 38 38 H 1.08993 * 109.47364 * 60.00111 * 9 8 5 39 39 H 1.08995 * 109.46562 * 60.00648 * 12 10 9 40 40 H 1.08997 * 109.46659 * 180.02562 * 12 10 9 41 41 H 1.08999 * 109.47133 * 300.00095 * 12 10 9 42 42 H 1.08998 * 109.47260 * 304.99459 * 13 10 9 43 43 H 1.08997 * 109.47502 * 64.99284 * 13 10 9 44 44 H 0.96999 * 119.99987 * 359.97438 * 14 13 10 45 45 H 1.08998 * 109.47065 * 300.00350 * 17 15 14 46 46 H 1.09002 * 109.46624 * 59.99968 * 17 15 14 47 47 H 0.97005 * 119.99677 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2752 1.0591 0.0000 4 6 3.5551 0.6889 0.0006 5 6 4.7371 1.6238 0.0002 6 1 4.4062 2.6279 0.2654 7 6 5.3691 1.6464 -1.3930 8 7 5.7284 1.1602 0.9802 9 6 6.5667 2.2722 1.4474 10 6 7.5849 1.7513 2.4638 11 1 8.1543 0.9339 2.0215 12 6 6.8511 1.2470 3.7081 13 6 8.5375 2.8822 2.8568 14 7 9.5837 2.3558 3.7370 15 6 10.5413 3.1769 4.2115 16 8 10.5367 4.3517 3.9103 17 6 11.6172 2.6355 5.1174 18 16 12.7442 3.9733 5.5822 19 6 13.8670 3.0847 6.6089 20 1 13.7251 2.0270 6.7754 21 6 14.9345 3.7436 7.2029 22 7 15.1077 5.0325 6.9995 23 14 16.1245 2.8015 8.2918 24 1 15.7111 1.3769 8.3604 25 1 17.4937 2.8934 7.7242 26 1 16.1144 3.3856 9.6572 27 7 3.6194 -0.6167 0.0015 28 7 2.2964 -1.0881 0.0005 29 1 2.0093 -2.0146 0.0006 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 4.6335 1.9904 -2.1201 34 1 6.2237 2.3229 -1.3933 35 1 5.7000 0.6423 -1.6582 36 1 5.2805 0.6946 1.7551 37 1 7.0924 2.7121 0.5998 38 1 5.9382 3.0286 1.9173 39 1 6.1725 0.4414 3.4280 40 1 7.5765 0.8764 4.4323 41 1 6.2818 2.0645 4.1504 42 1 8.9940 3.3010 1.9600 43 1 7.9814 3.6609 3.3788 44 1 9.5871 1.4163 3.9782 45 1 11.1604 2.2175 6.0144 46 1 12.1730 1.8563 4.5958 47 1 15.8540 5.4929 7.4143 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666513942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:27 Heat of formation + Delta-G solvation = 4.665957 kcal Electronic energy + Delta-G solvation = -25816.094517 eV Core-core repulsion = 21967.121206 eV Total energy + Delta-G solvation = -3848.973311 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.21628 -40.68228 -38.86537 -36.79347 -34.59103 -34.50264 -33.38587 -33.11087 -31.16763 -30.14305 -28.87528 -27.80957 -27.52595 -26.03704 -24.32981 -22.07372 -21.78307 -21.25415 -20.90869 -19.78707 -18.92175 -17.83648 -17.43575 -17.15640 -16.87529 -16.80582 -16.67826 -16.06179 -15.74111 -15.58172 -15.04475 -15.00296 -14.67318 -14.44103 -14.22442 -13.96973 -13.80256 -13.74226 -13.63943 -13.30061 -13.16181 -13.14479 -12.90706 -12.84889 -12.67595 -12.60379 -12.45282 -12.03316 -11.80695 -11.76445 -11.68662 -11.16131 -11.15126 -11.12578 -10.93985 -10.52017 -10.26171 -10.08583 -9.50090 -8.65693 -8.34083 -6.11962 0.55202 1.28091 1.41944 1.47964 1.59175 1.63786 1.69423 1.73912 2.26190 2.30434 2.77401 3.00238 3.17370 3.33798 3.60663 3.84754 3.84828 3.91670 3.97368 4.06363 4.24169 4.30968 4.32206 4.51218 4.52609 4.58699 4.66597 4.68744 4.69084 4.77494 4.82211 4.89288 4.96683 4.99374 5.04379 5.19434 5.23772 5.26288 5.34113 5.35913 5.42957 5.49335 5.91070 6.18482 6.20871 6.27516 6.52867 7.05631 7.07428 7.26768 8.75491 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.034498 B = 0.001428 C = 0.001403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.454671 B =19600.167134 C =19947.977241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.286 3.714 3 N -0.573 5.573 4 C 0.212 3.788 5 C 0.180 3.820 6 H 0.072 0.928 7 C -0.129 4.129 8 N -0.674 5.674 9 C 0.068 3.932 10 C -0.085 4.085 11 H 0.093 0.907 12 C -0.149 4.149 13 C 0.127 3.873 14 N -0.710 5.710 15 C 0.533 3.467 16 O -0.567 6.567 17 C -0.130 4.130 18 S -0.152 6.152 19 C -0.546 4.546 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.257 1.257 25 H -0.274 1.274 26 H -0.274 1.274 27 N -0.317 5.317 28 N -0.477 5.477 29 H 0.455 0.545 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.343 0.657 37 H 0.084 0.916 38 H 0.039 0.961 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.415 0.585 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.540 -16.634 -15.381 39.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.008 3.992 3 N -0.304 5.304 4 C -0.071 4.071 5 C 0.068 3.932 6 H 0.090 0.910 7 C -0.188 4.188 8 N -0.307 5.307 9 C -0.061 4.061 10 C -0.104 4.104 11 H 0.111 0.889 12 C -0.207 4.207 13 C 0.003 3.997 14 N -0.364 5.364 15 C 0.318 3.682 16 O -0.446 6.446 17 C -0.281 4.281 18 S 0.075 5.925 19 C -0.694 4.694 20 H 0.101 0.899 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.180 1.180 25 H -0.199 1.199 26 H -0.199 1.199 27 N -0.147 5.147 28 N -0.197 5.197 29 H 0.304 0.696 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.117 0.883 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.163 0.837 37 H 0.102 0.898 38 H 0.057 0.943 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.252 0.748 45 H 0.128 0.872 46 H 0.128 0.872 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -31.473 -14.793 -16.342 38.424 hybrid contribution -0.040 -1.923 1.605 2.505 sum -31.512 -16.716 -14.737 38.595 Atomic orbital electron populations 1.20646 0.80278 1.06516 1.06057 1.25212 0.98208 0.82090 0.93673 1.70367 1.01597 1.31347 1.27127 1.24380 0.93448 0.90547 0.98724 1.19769 0.84685 0.93263 0.95471 0.91009 1.21718 1.00875 1.02802 0.93360 1.60559 1.23994 1.28030 1.18155 1.21949 0.94661 0.91723 0.97788 1.21197 0.95664 0.97328 0.96192 0.88853 1.21876 1.00647 1.01240 0.96915 1.21357 0.88242 0.96675 0.93431 1.45731 1.27304 1.12984 1.50400 1.20057 0.82184 0.85901 0.80021 1.90690 1.75667 1.18439 1.59756 1.23377 0.98860 1.03618 1.02258 1.85575 1.29598 1.14377 1.62938 1.23248 1.14077 0.97891 1.34193 0.89921 1.26121 0.99128 0.96007 0.97828 1.70193 1.30815 1.10207 1.43587 0.84904 0.77186 0.78548 0.77289 1.18037 1.19917 1.19929 1.78030 0.97922 1.12298 1.26434 1.48059 1.03556 1.11052 1.57037 0.69618 0.87320 0.86978 0.88258 0.92142 0.90495 0.92497 0.83721 0.89805 0.94252 0.91623 0.91886 0.92891 0.92077 0.92414 0.74773 0.87233 0.87227 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.08 10.51 71.23 0.75 0.67 16 2 C 0.29 3.23 8.24 138.22 1.14 4.37 16 3 N -0.57 -10.59 11.19 -179.73 -2.01 -12.60 16 4 C 0.21 4.06 6.64 138.63 0.92 4.98 16 5 C 0.18 3.03 3.16 44.17 0.14 3.17 16 6 H 0.07 1.21 7.80 -2.39 -0.02 1.19 16 7 C -0.13 -1.99 9.40 71.98 0.68 -1.31 16 8 N -0.67 -10.72 6.29 -495.45 -3.11 -13.84 16 9 C 0.07 1.02 4.94 86.31 0.43 1.44 16 10 C -0.08 -1.31 2.63 -10.79 -0.03 -1.34 16 11 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 12 C -0.15 -2.13 8.84 71.98 0.64 -1.50 16 13 C 0.13 2.82 5.06 86.38 0.44 3.26 16 14 N -0.71 -18.04 5.28 -463.06 -2.45 -20.49 16 15 C 0.53 19.92 7.85 87.66 0.69 20.61 16 16 O -0.57 -26.71 15.86 -3.03 -0.05 -26.76 16 17 C -0.13 -5.21 6.16 71.24 0.44 -4.77 16 18 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 19 C -0.55 -31.48 9.50 67.95 0.65 -30.83 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 21 C 0.01 0.79 5.49 84.86 0.47 1.26 16 22 N -0.91 -56.42 13.22 21.65 0.29 -56.13 16 23 Si 1.00 43.91 29.55 68.60 2.03 45.94 16 24 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 N -0.32 -5.92 12.78 -51.33 -0.66 -6.57 16 28 N -0.48 -5.30 7.45 -50.71 -0.38 -5.67 16 29 H 0.46 1.60 8.96 -213.10 -1.91 -0.31 16 30 H 0.11 -0.16 8.14 -2.38 -0.02 -0.18 16 31 H 0.11 -0.49 8.14 -2.39 -0.02 -0.51 16 32 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 1.04 7.45 -2.39 -0.02 1.03 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.34 5.63 6.60 -89.70 -0.59 5.04 16 37 H 0.08 1.23 7.44 -2.38 -0.02 1.22 16 38 H 0.04 0.59 8.05 -2.39 -0.02 0.57 16 39 H 0.06 0.85 6.68 -2.39 -0.02 0.83 16 40 H 0.06 0.88 7.18 -2.39 -0.02 0.86 16 41 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.41 7.81 7.65 -92.71 -0.71 7.10 16 45 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 46 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 47 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 Total: -1.00 -84.31 405.42 -2.37 -86.69 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -2.20 Total: 19.13 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 7.33 Total: 0.02 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -8.32 Total: -115.30 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.05 Total: -26.76 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -84.31 -2.37 -86.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666513942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.354 kcal (2) G-P(sol) polarization free energy of solvation -84.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds