Wall clock time and date at job start Sat Apr 11 2020 06:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30835 * 125.96411 * 2 1 4 4 C 1.33242 * 109.83187 * 179.97438 * 3 2 1 5 5 C 1.50698 * 125.52968 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.46978 * 15.00156 * 5 4 3 7 7 C 1.53004 * 109.46913 * 255.00342 * 5 4 3 8 8 N 1.46897 * 109.47303 * 135.00477 * 5 4 3 9 9 C 1.46901 * 111.00075 * 205.00124 * 8 5 4 10 10 C 1.52999 * 109.47168 * 179.97438 * 9 8 5 11 11 H 1.08993 * 109.47839 * 305.00284 * 10 9 8 12 12 C 1.53006 * 109.46626 * 65.00215 * 10 9 8 13 13 C 1.52997 * 109.46991 * 184.99837 * 10 9 8 14 14 N 1.46500 * 109.47170 * 175.00373 * 13 10 9 15 15 C 1.34775 * 120.00364 * 179.97438 * 14 13 10 16 16 O 1.21283 * 119.99711 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00294 * 179.97438 * 15 14 13 18 18 S 1.81002 * 109.47195 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99971 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99979 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99985 * 180.02562 * 19 18 17 22 22 N 1.31635 * 120.00064 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00144 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47076 * 89.99839 * 23 21 19 25 25 H 1.48489 * 109.47315 * 210.00075 * 23 21 19 26 26 H 1.48504 * 109.46887 * 330.00198 * 23 21 19 27 27 N 1.30716 * 108.94239 * 0.26860 * 4 3 2 28 28 N 1.34432 * 125.96037 * 179.97438 * 2 1 3 29 29 H 0.97000 * 126.82094 * 0.02562 * 28 2 1 30 30 H 1.09001 * 109.47504 * 89.99402 * 1 2 3 31 31 H 1.08995 * 109.47547 * 209.99740 * 1 2 3 32 32 H 1.09002 * 109.46905 * 330.00136 * 1 2 3 33 33 H 1.09003 * 109.47147 * 299.99710 * 7 5 4 34 34 H 1.08998 * 109.47090 * 59.99969 * 7 5 4 35 35 H 1.08998 * 109.47044 * 180.02562 * 7 5 4 36 36 H 1.00900 * 111.00201 * 81.04216 * 8 5 4 37 37 H 1.09007 * 109.47037 * 59.99803 * 9 8 5 38 38 H 1.08993 * 109.46890 * 299.99947 * 9 8 5 39 39 H 1.09001 * 109.46801 * 59.99811 * 12 10 9 40 40 H 1.09001 * 109.46998 * 179.97438 * 12 10 9 41 41 H 1.09000 * 109.47050 * 299.99699 * 12 10 9 42 42 H 1.09006 * 109.47500 * 295.00320 * 13 10 9 43 43 H 1.09000 * 109.47325 * 55.00408 * 13 10 9 44 44 H 0.97001 * 119.99650 * 0.02562 * 14 13 10 45 45 H 1.08998 * 109.47218 * 300.00411 * 17 15 14 46 46 H 1.09000 * 109.46808 * 60.00788 * 17 15 14 47 47 H 0.96996 * 119.99997 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6887 0.0006 5 6 4.7373 1.6235 0.0013 6 1 4.4064 2.6275 0.2673 7 6 5.3695 1.6473 -1.3918 8 7 5.7284 1.1589 0.9809 9 6 6.5668 2.2706 1.4494 10 6 7.5839 1.7489 2.4663 11 1 7.0612 1.2302 3.2699 12 6 8.5455 0.7802 1.7748 13 6 8.3734 2.9239 3.0466 14 7 9.2630 2.4394 4.1050 15 6 10.0609 3.3037 4.7629 16 8 10.0420 4.4827 4.4791 17 6 10.9755 2.8053 5.8520 18 16 11.9097 4.1954 6.5384 19 6 12.8686 3.3504 7.7513 20 1 12.7617 2.2830 7.8767 21 6 13.7604 4.0567 8.5464 22 7 13.8896 5.3579 8.3947 23 14 14.7765 3.1610 9.8328 24 1 16.0563 2.7120 9.2281 25 1 15.0594 4.0775 10.9664 26 1 14.0216 1.9814 10.3265 27 7 3.6193 -0.6168 -0.0049 28 7 2.2964 -1.0881 0.0005 29 1 2.0092 -2.0146 0.0006 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 5.7004 0.6434 -1.6578 34 1 4.6341 1.9920 -2.1187 35 1 6.2247 2.3231 -1.3912 36 1 6.2938 0.4157 0.5987 37 1 5.9380 3.0266 1.9199 38 1 7.0925 2.7111 0.6023 39 1 9.0682 1.2990 0.9712 40 1 9.2704 0.4089 2.4991 41 1 7.9830 -0.0569 1.3614 42 1 8.9659 3.3883 2.2583 43 1 7.6816 3.6573 3.4610 44 1 9.2783 1.4964 4.3317 45 1 10.3827 2.3417 6.6404 46 1 11.6671 2.0715 5.4380 47 1 14.5126 5.8515 8.9506 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666513944.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:33 Heat of formation + Delta-G solvation = 32.123131 kcal Electronic energy + Delta-G solvation = -25805.179163 eV Core-core repulsion = 21957.396485 eV Total energy + Delta-G solvation = -3847.782679 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.53213 -39.32201 -38.11371 -35.88782 -33.55808 -32.77481 -32.41182 -32.35833 -29.98496 -29.03760 -28.38774 -26.76886 -25.51892 -25.09175 -23.83361 -21.49731 -20.69711 -20.41997 -20.07652 -18.33392 -17.79959 -16.55501 -16.36376 -16.17700 -15.68409 -15.48995 -15.21591 -14.88126 -14.78061 -14.46935 -14.21632 -13.92159 -13.69811 -13.45793 -13.36874 -13.17929 -12.97219 -12.82747 -12.76265 -12.52047 -12.39953 -12.18140 -11.81472 -11.79791 -11.27244 -11.10740 -11.04374 -11.01109 -10.99580 -10.73529 -10.47214 -10.41207 -9.85301 -9.78782 -9.35473 -9.04558 -8.86157 -8.79231 -8.20329 -6.46922 -6.19196 -3.89466 1.19689 2.21979 2.44884 3.06020 3.15994 3.24170 3.28298 3.31681 3.38838 3.74287 3.98634 4.15949 4.22952 4.34967 4.58697 4.62070 4.66730 4.74659 4.78225 4.81439 4.99388 5.14635 5.15930 5.20124 5.21096 5.26608 5.34443 5.42821 5.44327 5.57632 5.63678 5.67901 5.72500 5.79718 5.84558 5.93499 6.03082 6.04098 6.10213 6.17991 6.53354 6.63863 6.70139 6.98864 7.62019 7.72172 7.77147 8.37728 8.67474 9.26110 10.88255 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028353 B = 0.001443 C = 0.001424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.324141 B =19398.908938 C =19652.247564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.281 3.719 3 N -0.538 5.538 4 C 0.246 3.754 5 C 0.178 3.822 6 H 0.107 0.893 7 C -0.177 4.177 8 N -0.679 5.679 9 C 0.067 3.933 10 C -0.101 4.101 11 H 0.087 0.913 12 C -0.152 4.152 13 C 0.127 3.873 14 N -0.737 5.737 15 C 0.531 3.469 16 O -0.519 6.519 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 N -0.300 5.300 28 N -0.486 5.486 29 H 0.439 0.561 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.349 0.651 37 H 0.080 0.920 38 H 0.039 0.961 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.397 0.603 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.188 -15.053 -21.150 36.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.002 3.998 3 N -0.268 5.268 4 C -0.037 4.037 5 C 0.065 3.935 6 H 0.125 0.875 7 C -0.237 4.237 8 N -0.312 5.312 9 C -0.062 4.062 10 C -0.120 4.120 11 H 0.105 0.895 12 C -0.209 4.209 13 C 0.002 3.998 14 N -0.392 5.392 15 C 0.317 3.683 16 O -0.393 6.393 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 N -0.129 5.129 28 N -0.204 5.204 29 H 0.284 0.716 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.169 0.831 37 H 0.098 0.902 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.232 0.768 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -25.980 -12.879 -21.030 35.820 hybrid contribution 0.823 -3.017 0.512 3.169 sum -25.157 -15.896 -20.518 36.146 Atomic orbital electron populations 1.20396 0.83670 1.05123 1.04525 1.24378 0.96601 0.82901 0.95908 1.70327 1.01373 1.29594 1.25491 1.24029 0.92778 0.89987 0.96951 1.19657 0.87001 0.95463 0.91394 0.87487 1.22464 1.01586 1.02920 0.96734 1.60301 1.19014 1.11542 1.40341 1.21947 0.94171 0.92959 0.97118 1.21355 0.95664 0.96433 0.98565 0.89476 1.21897 0.99089 0.99023 1.00893 1.21237 0.92559 0.95676 0.90289 1.45981 1.43086 1.11424 1.38678 1.20290 0.79854 0.86104 0.82050 1.90700 1.66607 1.16493 1.65517 1.23529 1.01155 1.06632 0.99093 1.85391 1.47284 1.06767 1.43952 1.22877 1.26901 0.96431 1.22170 0.90944 1.24987 0.96432 0.94945 0.97188 1.70021 1.35149 1.06330 1.38809 0.86172 0.79950 0.79213 0.80187 1.20286 1.20755 1.19712 1.77990 0.96208 1.12439 1.26264 1.48038 1.04533 1.09989 1.57875 0.71583 0.89020 0.89850 0.88272 0.91848 0.91499 0.91112 0.83082 0.90190 0.94229 0.92475 0.92105 0.92336 0.91634 0.91516 0.76840 0.89253 0.89283 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.18 10.51 36.00 0.38 0.20 16 2 C 0.28 1.96 8.24 -155.69 -1.28 0.68 16 3 N -0.54 -5.44 11.19 -8.16 -0.09 -5.53 16 4 C 0.25 2.49 6.99 -156.85 -1.10 1.39 16 5 C 0.18 1.47 3.13 -68.87 -0.22 1.25 16 6 H 0.11 0.89 7.80 -51.93 -0.40 0.48 16 7 C -0.18 -1.18 9.14 37.16 0.34 -0.84 16 8 N -0.68 -5.56 6.22 -107.95 -0.67 -6.23 16 9 C 0.07 0.52 4.94 -3.82 -0.02 0.50 16 10 C -0.10 -0.86 2.63 -90.62 -0.24 -1.09 16 11 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 12 C -0.15 -1.17 8.84 37.16 0.33 -0.84 16 13 C 0.13 1.47 5.06 -4.04 -0.02 1.45 16 14 N -0.74 -9.96 5.28 -60.29 -0.32 -10.28 16 15 C 0.53 10.09 7.85 -10.99 -0.09 10.00 16 16 O -0.52 -12.01 15.86 5.55 0.09 -11.92 16 17 C -0.15 -3.15 6.16 36.00 0.22 -2.92 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 19 C -0.54 -15.43 9.50 30.94 0.29 -15.13 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.39 13.22 55.49 0.73 -25.65 16 23 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 N -0.30 -2.99 12.78 32.42 0.41 -2.57 16 28 N -0.49 -3.30 7.45 32.62 0.24 -3.05 16 29 H 0.44 1.38 8.96 -182.34 -1.63 -0.25 16 30 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 31 H 0.08 0.01 8.14 -51.93 -0.42 -0.42 16 32 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.41 7.45 -51.93 -0.39 0.02 16 36 H 0.35 2.71 6.72 -39.29 -0.26 2.45 16 37 H 0.08 0.65 8.06 -51.93 -0.42 0.23 16 38 H 0.04 0.28 7.43 -51.93 -0.39 -0.11 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.49 7.18 -51.93 -0.37 0.11 16 41 H 0.06 0.40 6.68 -51.93 -0.35 0.06 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.40 4.29 7.65 -40.82 -0.31 3.97 16 45 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 46 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 47 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 405.53 15.07 6.11 6.11 Total: -1.00 -38.12 405.53 -10.94 -49.06 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -8.72 Total: 0.70 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -1.49 Total: -3.31 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 0.31 Total: -53.32 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.92 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -38.12 -10.94 -49.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666513944.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.180 kcal (2) G-P(sol) polarization free energy of solvation -38.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds