Wall clock time and date at job start Sat Apr 11 2020 06:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30835 * 125.96411 * 2 1 4 4 C 1.33242 * 109.83187 * 179.97438 * 3 2 1 5 5 C 1.50698 * 125.52968 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.46978 * 15.00156 * 5 4 3 7 7 C 1.53004 * 109.46913 * 255.00342 * 5 4 3 8 8 N 1.46897 * 109.47303 * 135.00477 * 5 4 3 9 9 C 1.46901 * 111.00075 * 205.00124 * 8 5 4 10 10 C 1.52999 * 109.47168 * 179.97438 * 9 8 5 11 11 H 1.08993 * 109.47839 * 305.00284 * 10 9 8 12 12 C 1.53006 * 109.46626 * 65.00215 * 10 9 8 13 13 C 1.52997 * 109.46991 * 184.99837 * 10 9 8 14 14 N 1.46500 * 109.47170 * 175.00373 * 13 10 9 15 15 C 1.34775 * 120.00364 * 179.97438 * 14 13 10 16 16 O 1.21283 * 119.99711 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00294 * 179.97438 * 15 14 13 18 18 S 1.81002 * 109.47195 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99971 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99979 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99985 * 180.02562 * 19 18 17 22 22 N 1.31635 * 120.00064 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00144 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47076 * 89.99839 * 23 21 19 25 25 H 1.48489 * 109.47315 * 210.00075 * 23 21 19 26 26 H 1.48504 * 109.46887 * 330.00198 * 23 21 19 27 27 N 1.30716 * 108.94239 * 0.26860 * 4 3 2 28 28 N 1.34432 * 125.96037 * 179.97438 * 2 1 3 29 29 H 0.97000 * 126.82094 * 0.02562 * 28 2 1 30 30 H 1.09001 * 109.47504 * 89.99402 * 1 2 3 31 31 H 1.08995 * 109.47547 * 209.99740 * 1 2 3 32 32 H 1.09002 * 109.46905 * 330.00136 * 1 2 3 33 33 H 1.09003 * 109.47147 * 299.99710 * 7 5 4 34 34 H 1.08998 * 109.47090 * 59.99969 * 7 5 4 35 35 H 1.08998 * 109.47044 * 180.02562 * 7 5 4 36 36 H 1.00900 * 111.00201 * 81.04216 * 8 5 4 37 37 H 1.09007 * 109.47037 * 59.99803 * 9 8 5 38 38 H 1.08993 * 109.46890 * 299.99947 * 9 8 5 39 39 H 1.09001 * 109.46801 * 59.99811 * 12 10 9 40 40 H 1.09001 * 109.46998 * 179.97438 * 12 10 9 41 41 H 1.09000 * 109.47050 * 299.99699 * 12 10 9 42 42 H 1.09006 * 109.47500 * 295.00320 * 13 10 9 43 43 H 1.09000 * 109.47325 * 55.00408 * 13 10 9 44 44 H 0.97001 * 119.99650 * 0.02562 * 14 13 10 45 45 H 1.08998 * 109.47218 * 300.00411 * 17 15 14 46 46 H 1.09000 * 109.46808 * 60.00788 * 17 15 14 47 47 H 0.96996 * 119.99997 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6887 0.0006 5 6 4.7373 1.6235 0.0013 6 1 4.4064 2.6275 0.2673 7 6 5.3695 1.6473 -1.3918 8 7 5.7284 1.1589 0.9809 9 6 6.5668 2.2706 1.4494 10 6 7.5839 1.7489 2.4663 11 1 7.0612 1.2302 3.2699 12 6 8.5455 0.7802 1.7748 13 6 8.3734 2.9239 3.0466 14 7 9.2630 2.4394 4.1050 15 6 10.0609 3.3037 4.7629 16 8 10.0420 4.4827 4.4791 17 6 10.9755 2.8053 5.8520 18 16 11.9097 4.1954 6.5384 19 6 12.8686 3.3504 7.7513 20 1 12.7617 2.2830 7.8767 21 6 13.7604 4.0567 8.5464 22 7 13.8896 5.3579 8.3947 23 14 14.7765 3.1610 9.8328 24 1 16.0563 2.7120 9.2281 25 1 15.0594 4.0775 10.9664 26 1 14.0216 1.9814 10.3265 27 7 3.6193 -0.6168 -0.0049 28 7 2.2964 -1.0881 0.0005 29 1 2.0092 -2.0146 0.0006 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 5.7004 0.6434 -1.6578 34 1 4.6341 1.9920 -2.1187 35 1 6.2247 2.3231 -1.3912 36 1 6.2938 0.4157 0.5987 37 1 5.9380 3.0266 1.9199 38 1 7.0925 2.7111 0.6023 39 1 9.0682 1.2990 0.9712 40 1 9.2704 0.4089 2.4991 41 1 7.9830 -0.0569 1.3614 42 1 8.9659 3.3883 2.2583 43 1 7.6816 3.6573 3.4610 44 1 9.2783 1.4964 4.3317 45 1 10.3827 2.3417 6.6404 46 1 11.6671 2.0715 5.4380 47 1 14.5126 5.8515 8.9506 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666513944.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:33 Heat of formation + Delta-G solvation = 3.145020 kcal Electronic energy + Delta-G solvation = -25806.435748 eV Core-core repulsion = 21957.396485 eV Total energy + Delta-G solvation = -3849.039264 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.11324 -40.68445 -38.91947 -36.81649 -34.58735 -34.48004 -33.31286 -33.12810 -31.11784 -30.04128 -28.80083 -27.78558 -27.44816 -25.89613 -24.58317 -22.03802 -21.78151 -21.32607 -20.92746 -19.78539 -18.88277 -17.80971 -17.46257 -16.93921 -16.87288 -16.71578 -16.47465 -16.09433 -15.78968 -15.59185 -15.17931 -14.92285 -14.68925 -14.44197 -14.14090 -13.88678 -13.84879 -13.75830 -13.56786 -13.39296 -13.19793 -13.15712 -12.94841 -12.87994 -12.66484 -12.61714 -12.40916 -12.02392 -11.84560 -11.76082 -11.69739 -11.13542 -11.08512 -11.05265 -10.94268 -10.43549 -10.26801 -10.08674 -9.45435 -8.65845 -8.33882 -6.12017 0.63618 1.27859 1.43082 1.47806 1.58363 1.63523 1.77113 1.83093 2.26624 2.30911 2.82207 3.00252 3.32242 3.37169 3.67093 3.86365 3.86624 3.93578 3.98174 4.06729 4.16147 4.24507 4.31018 4.50026 4.52148 4.58561 4.59710 4.70577 4.72701 4.77507 4.82149 4.86217 4.98431 5.03089 5.06031 5.12245 5.25451 5.30077 5.38088 5.42540 5.42827 5.49952 5.93939 6.20586 6.24069 6.38903 6.52675 7.07382 7.13427 7.26514 8.75407 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028353 B = 0.001443 C = 0.001424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.324141 B =19398.908938 C =19652.247564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.284 3.716 3 N -0.576 5.576 4 C 0.233 3.767 5 C 0.178 3.822 6 H 0.102 0.898 7 C -0.168 4.168 8 N -0.683 5.683 9 C 0.071 3.929 10 C -0.086 4.086 11 H 0.086 0.914 12 C -0.150 4.150 13 C 0.127 3.873 14 N -0.710 5.710 15 C 0.533 3.467 16 O -0.567 6.567 17 C -0.130 4.130 18 S -0.152 6.152 19 C -0.548 4.548 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.267 1.267 25 H -0.278 1.278 26 H -0.258 1.258 27 N -0.327 5.327 28 N -0.480 5.480 29 H 0.453 0.547 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.351 0.649 37 H 0.074 0.926 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.415 0.585 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.165 -17.823 -21.351 38.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.006 3.994 3 N -0.307 5.307 4 C -0.051 4.051 5 C 0.065 3.935 6 H 0.120 0.880 7 C -0.227 4.227 8 N -0.316 5.316 9 C -0.058 4.058 10 C -0.105 4.105 11 H 0.105 0.895 12 C -0.207 4.207 13 C 0.003 3.997 14 N -0.364 5.364 15 C 0.318 3.682 16 O -0.446 6.446 17 C -0.281 4.281 18 S 0.075 5.925 19 C -0.695 4.695 20 H 0.101 0.899 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.182 1.182 27 N -0.157 5.157 28 N -0.200 5.200 29 H 0.302 0.698 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.172 0.828 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.252 0.748 45 H 0.127 0.873 46 H 0.128 0.872 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -26.999 -15.732 -21.256 37.792 hybrid contribution 0.960 -2.229 0.476 2.473 sum -26.040 -17.961 -20.780 37.848 Atomic orbital electron populations 1.20622 0.80442 1.06375 1.05982 1.25173 0.98160 0.82199 0.93908 1.70326 1.01815 1.31328 1.27259 1.24323 0.93342 0.90330 0.97106 1.19670 0.86779 0.94905 0.92136 0.87995 1.22373 1.01674 1.02982 0.95710 1.60250 1.19038 1.11642 1.40635 1.21876 0.93919 0.92799 0.97189 1.21200 0.95482 0.95154 0.98645 0.89518 1.21887 0.98910 0.99071 1.00824 1.21365 0.92091 0.96907 0.89369 1.45735 1.41386 1.11616 1.37691 1.20055 0.80233 0.85862 0.82023 1.90690 1.68301 1.18559 1.67007 1.23376 1.01127 1.03658 0.99958 1.85572 1.49290 1.12353 1.45240 1.23216 1.27126 0.96878 1.22311 0.89923 1.26123 0.97639 0.95748 0.99555 1.70186 1.36144 1.08307 1.40140 0.84951 0.78109 0.78062 0.76838 1.19266 1.20282 1.18240 1.77882 0.98046 1.12506 1.27239 1.47990 1.03664 1.10899 1.57413 0.69829 0.87292 0.87155 0.88400 0.92075 0.91751 0.90080 0.82779 0.90715 0.93282 0.92406 0.92137 0.91190 0.92099 0.92428 0.74799 0.87319 0.87169 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.19 10.51 71.23 0.75 0.56 16 2 C 0.28 3.64 8.24 138.22 1.14 4.78 16 3 N -0.58 -11.47 11.19 -179.73 -2.01 -13.49 16 4 C 0.23 4.64 6.99 138.63 0.97 5.61 16 5 C 0.18 2.87 3.13 44.17 0.14 3.01 16 6 H 0.10 1.70 7.80 -2.39 -0.02 1.68 16 7 C -0.17 -2.11 9.14 71.98 0.66 -1.46 16 8 N -0.68 -10.48 6.22 -495.45 -3.08 -13.56 16 9 C 0.07 1.03 4.94 86.30 0.43 1.45 16 10 C -0.09 -1.31 2.63 -10.79 -0.03 -1.33 16 11 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 12 C -0.15 -1.97 8.84 71.98 0.64 -1.33 16 13 C 0.13 2.80 5.06 86.38 0.44 3.24 16 14 N -0.71 -18.07 5.28 -463.06 -2.45 -20.52 16 15 C 0.53 19.94 7.85 87.66 0.69 20.63 16 16 O -0.57 -26.73 15.86 -3.04 -0.05 -26.78 16 17 C -0.13 -5.21 6.16 71.23 0.44 -4.78 16 18 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16 19 C -0.55 -31.57 9.50 67.95 0.65 -30.92 16 20 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 21 C 0.01 0.81 5.49 84.86 0.47 1.27 16 22 N -0.91 -56.41 13.22 21.65 0.29 -56.13 16 23 Si 1.00 43.87 29.55 68.60 2.03 45.90 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 25 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 27 N -0.33 -6.31 12.78 -51.33 -0.66 -6.97 16 28 N -0.48 -5.97 7.45 -50.71 -0.38 -6.35 16 29 H 0.45 2.18 8.96 -213.10 -1.91 0.27 16 30 H 0.11 -0.06 8.14 -2.39 -0.02 -0.07 16 31 H 0.11 -0.31 8.14 -2.39 -0.02 -0.33 16 32 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 0.83 7.45 -2.39 -0.02 0.81 16 36 H 0.35 4.99 6.72 -89.69 -0.60 4.38 16 37 H 0.07 1.17 8.06 -2.38 -0.02 1.15 16 38 H 0.05 0.62 7.43 -2.39 -0.02 0.61 16 39 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 0.81 7.18 -2.39 -0.02 0.79 16 41 H 0.07 0.79 6.68 -2.39 -0.02 0.78 16 42 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.41 7.85 7.65 -92.71 -0.71 7.14 16 45 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 46 H 0.11 3.95 8.14 -2.39 -0.02 3.94 16 47 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -85.08 405.53 -2.32 -87.40 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -2.22 Total: 19.44 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 7.36 Total: 0.75 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -8.29 Total: -117.01 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.05 Total: -26.78 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal Total: -85.08 -2.32 -87.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666513944.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.544 kcal (2) G-P(sol) polarization free energy of solvation -85.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds