Wall clock time and date at job start Sat Apr 11 2020 06:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00515 * 2 1 4 4 H 1.48503 * 109.46740 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47499 * 119.99938 * 3 2 1 6 6 H 1.48504 * 109.47201 * 240.00378 * 3 2 1 7 7 C 1.38820 * 119.99467 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99839 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00190 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00285 * 174.07144 * 9 7 2 11 11 C 1.52998 * 109.54327 * 62.21846 * 10 9 7 12 12 N 1.46499 * 109.47164 * 54.84832 * 11 10 9 13 13 C 1.34779 * 120.00214 * 176.66455 * 12 11 10 14 14 O 1.21278 * 119.99688 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00128 * 180.02562 * 13 12 11 16 16 N 1.46503 * 109.47229 * 179.97438 * 15 13 12 17 17 C 1.46090 * 118.72582 * 269.73243 * 16 15 13 18 18 C 1.53216 * 109.82212 * 161.46719 * 17 16 15 19 19 O 1.43243 * 108.51359 * 49.53754 * 18 17 16 20 20 C 1.42965 * 112.99029 * 291.46049 * 19 18 17 21 21 C 1.33871 * 118.72663 * 90.00208 * 16 15 13 22 22 O 1.21282 * 118.83520 * 1.87978 * 21 16 15 23 23 C 1.53177 * 109.54184 * 302.04562 * 10 9 7 24 24 C 1.53285 * 109.06031 * 297.02638 * 23 10 9 25 25 O 1.42900 * 109.46053 * 302.44532 * 24 23 10 26 26 C 1.42904 * 114.09943 * 61.15813 * 25 24 23 27 27 C 1.53087 * 109.41425 * 298.84255 * 26 25 24 28 28 H 0.97000 * 119.99280 * 359.97438 * 1 2 3 29 29 H 0.97006 * 119.99870 * 354.06882 * 9 7 2 30 30 H 1.08999 * 109.47222 * 174.85004 * 11 10 9 31 31 H 1.09005 * 109.46947 * 294.85379 * 11 10 9 32 32 H 0.97003 * 120.00300 * 356.66303 * 12 11 10 33 33 H 1.09007 * 109.47226 * 299.99828 * 15 13 12 34 34 H 1.09001 * 109.47137 * 59.99699 * 15 13 12 35 35 H 1.09002 * 109.39699 * 281.77639 * 17 16 15 36 36 H 1.09001 * 109.39632 * 41.50635 * 17 16 15 37 37 H 1.09000 * 109.82449 * 289.74871 * 18 17 16 38 38 H 1.08999 * 109.67015 * 169.23795 * 18 17 16 39 39 H 1.08998 * 109.41533 * 289.49711 * 20 19 18 40 40 H 1.09005 * 109.36369 * 169.66276 * 20 19 18 41 41 H 1.09001 * 109.52689 * 57.01350 * 23 10 9 42 42 H 1.08998 * 109.52129 * 177.20594 * 23 10 9 43 43 H 1.09007 * 109.45488 * 182.44942 * 24 23 10 44 44 H 1.09001 * 109.46894 * 62.45037 * 24 23 10 45 45 H 1.08998 * 109.48150 * 178.85483 * 26 25 24 46 46 H 1.09003 * 109.48614 * 58.82955 * 26 25 24 47 47 H 1.08995 * 109.52701 * 297.70105 * 27 26 25 48 48 H 1.09004 * 109.57496 * 177.54261 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6963 1.2124 6 1 3.1041 1.6963 -1.2126 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2024 0.0001 9 7 1.3255 -2.3881 0.0016 10 6 2.0519 -3.6536 -0.1289 11 6 3.0008 -3.8239 1.0592 12 7 2.2445 -3.7084 2.3086 13 6 2.8645 -3.8923 3.4911 14 8 4.0486 -4.1529 3.5208 15 6 2.0865 -3.7740 4.7762 16 7 2.9797 -4.0165 5.9119 17 6 3.1287 -5.3821 6.4089 18 6 4.4046 -5.4926 7.2500 19 8 4.4155 -4.4227 8.2025 20 6 4.5897 -3.1389 7.5981 21 6 3.6234 -2.9772 6.4576 22 8 3.4197 -1.8660 6.0165 23 6 2.8576 -3.6499 -1.4316 24 6 1.8910 -3.5581 -2.6177 25 8 0.9720 -4.6512 -2.5687 26 6 0.1597 -4.6784 -1.3933 27 6 1.0549 -4.8161 -0.1591 28 1 -0.4849 0.8401 0.0004 29 1 0.3594 -2.3902 0.0888 30 1 3.4727 -4.8052 1.0095 31 1 3.7675 -3.0498 1.0257 32 1 1.2976 -3.4995 2.2849 33 1 1.6631 -2.7725 4.8539 34 1 1.2824 -4.5099 4.7832 35 1 2.2643 -5.6412 7.0204 36 1 3.1927 -6.0694 5.5653 37 1 5.2801 -5.4171 6.6052 38 1 4.4172 -6.4485 7.7736 39 1 5.6097 -3.0498 7.2241 40 1 4.4069 -2.3621 8.3406 41 1 3.5314 -2.7931 -1.4409 42 1 3.4366 -4.5705 -1.5044 43 1 2.4550 -3.5988 -3.5497 44 1 1.3412 -2.6183 -2.5664 45 1 -0.5237 -5.5260 -1.4432 46 1 -0.4129 -3.7533 -1.3256 47 1 1.5976 -5.7602 -0.2062 48 1 0.4413 -4.7932 0.7415 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671934900.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:40 Heat of formation + Delta-G solvation = -134.908480 kcal Electronic energy + Delta-G solvation = -31620.293009 eV Core-core repulsion = 27290.221674 eV Total energy + Delta-G solvation = -4330.071335 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.89613 -39.60771 -38.68723 -37.76179 -35.93269 -35.28174 -33.48521 -32.22116 -30.65685 -30.59374 -29.40634 -29.17953 -27.15698 -25.58405 -24.12715 -24.02536 -23.03953 -22.07151 -20.26573 -19.23839 -18.65452 -17.87992 -17.48884 -17.12103 -17.06066 -16.01623 -15.68536 -15.64076 -15.56488 -15.39364 -14.94933 -14.64560 -14.47090 -14.30171 -14.16676 -13.84088 -13.64804 -13.49336 -13.29223 -12.99246 -12.66767 -12.47477 -12.12072 -11.96378 -11.88288 -11.68165 -11.53899 -11.42876 -10.90759 -10.87608 -10.80901 -10.75411 -10.38265 -10.06278 -9.91079 -9.75611 -9.71189 -9.56297 -9.22267 -8.85926 -8.73507 -8.52929 -7.11677 -5.87550 -3.18331 2.36287 2.62981 2.94098 3.40986 3.43646 3.45827 3.48725 3.70995 4.12602 4.36641 4.49094 4.52175 4.72321 4.87249 4.99436 5.03628 5.13536 5.16194 5.17231 5.22518 5.31219 5.34916 5.41770 5.49846 5.50547 5.53527 5.63990 5.75893 5.97046 6.01270 6.05193 6.08862 6.19145 6.28976 6.39901 6.48142 6.52175 6.54319 6.71091 6.77062 6.95232 7.18325 7.64405 7.70503 7.89813 7.99860 8.29529 8.58281 9.42558 9.91580 10.28213 11.33897 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011517 B = 0.003531 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.578102 B = 7928.395643 C = 9636.672783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.003 4.003 3 Si 0.901 3.099 4 H -0.291 1.291 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.712 5.712 10 C 0.189 3.811 11 C 0.120 3.880 12 N -0.697 5.697 13 C 0.496 3.504 14 O -0.552 6.552 15 C 0.089 3.911 16 N -0.587 5.587 17 C 0.084 3.916 18 C 0.044 3.956 19 O -0.373 6.373 20 C 0.053 3.947 21 C 0.490 3.510 22 O -0.531 6.531 23 C -0.152 4.152 24 C 0.070 3.930 25 O -0.393 6.393 26 C 0.066 3.934 27 C -0.150 4.150 28 H 0.256 0.744 29 H 0.384 0.616 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.403 0.597 33 H 0.119 0.881 34 H 0.106 0.894 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.115 0.885 39 H 0.092 0.908 40 H 0.130 0.870 41 H 0.077 0.923 42 H 0.054 0.946 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.060 0.940 47 H 0.068 0.932 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.044 -14.596 10.258 18.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.732 3.268 4 H -0.217 1.217 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.354 5.354 10 C 0.097 3.903 11 C -0.007 4.007 12 N -0.348 5.348 13 C 0.280 3.720 14 O -0.430 6.430 15 C -0.037 4.037 16 N -0.320 5.320 17 C -0.039 4.039 18 C -0.033 4.033 19 O -0.291 6.291 20 C -0.026 4.026 21 C 0.278 3.722 22 O -0.407 6.407 23 C -0.192 4.192 24 C -0.007 4.007 25 O -0.312 6.312 26 C -0.011 4.011 27 C -0.188 4.188 28 H 0.066 0.934 29 H 0.219 0.781 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.239 0.761 33 H 0.137 0.863 34 H 0.124 0.876 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.133 0.867 39 H 0.110 0.890 40 H 0.148 0.852 41 H 0.096 0.904 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.078 0.922 47 H 0.087 0.913 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.849 -14.193 10.095 17.837 hybrid contribution -0.146 1.344 -0.132 1.359 sum 3.703 -12.849 9.963 16.675 Atomic orbital electron populations 1.69630 1.05017 1.25934 1.57101 1.24679 0.95403 0.97537 1.02337 0.86361 0.78719 0.83742 0.77967 1.21709 1.21178 1.21247 1.18991 0.90920 0.83636 1.43392 0.91337 1.42465 1.06153 0.99477 1.87337 1.19827 0.91303 0.87399 0.91775 1.21807 0.95132 0.99970 0.83774 1.45710 1.13862 1.69993 1.05249 1.20882 0.88271 0.77222 0.85611 1.90637 1.15590 1.49267 1.87531 1.21380 0.92394 1.05783 0.84181 1.46992 1.45782 1.07742 1.31506 1.22184 0.99421 0.83297 0.98966 1.23039 0.96682 0.91685 0.91886 1.88158 1.93965 1.14411 1.32567 1.22825 0.98258 0.87058 0.94469 1.20968 0.81782 0.84544 0.84945 1.90807 1.63053 1.24106 1.62762 1.22481 0.98901 1.01480 0.96352 1.22485 0.90818 0.90265 0.97088 1.87793 1.52653 1.49712 1.41077 1.22459 0.92434 1.01651 0.84573 1.22338 0.98926 0.98612 0.98918 0.93406 0.78080 0.92884 0.91797 0.76127 0.86337 0.87640 0.90542 0.89521 0.91371 0.86712 0.89034 0.85186 0.90449 0.92732 0.90403 0.91184 0.90106 0.92152 0.91323 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.02 13.07 55.49 0.73 -25.29 16 2 C 0.00 -0.08 5.50 -17.43 -0.10 -0.17 16 3 Si 0.90 22.10 29.55 -169.99 -5.02 17.08 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.24 -5.97 8.67 -15.06 -0.13 -6.10 16 8 H 0.07 1.75 6.78 -52.49 -0.36 1.40 16 9 N -0.71 -15.13 3.61 -47.06 -0.17 -15.30 16 10 C 0.19 3.29 0.41 -131.64 -0.05 3.23 16 11 C 0.12 2.12 4.37 -4.04 -0.02 2.10 16 12 N -0.70 -11.54 5.13 -60.30 -0.31 -11.85 16 13 C 0.50 8.32 7.89 -10.99 -0.09 8.23 16 14 O -0.55 -10.96 16.43 5.56 0.09 -10.87 16 15 C 0.09 1.19 5.80 -5.19 -0.03 1.16 16 16 N -0.59 -7.59 2.32 -175.66 -0.41 -7.99 16 17 C 0.08 0.75 6.63 -4.15 -0.03 0.72 16 18 C 0.04 0.35 6.91 37.27 0.26 0.61 16 19 O -0.37 -3.74 10.85 -35.23 -0.38 -4.12 16 20 C 0.05 0.58 6.98 35.84 0.25 0.83 16 21 C 0.49 7.28 7.58 -11.56 -0.09 7.19 16 22 O -0.53 -10.26 16.36 5.56 0.09 -10.17 16 23 C -0.15 -2.61 4.80 -26.49 -0.13 -2.74 16 24 C 0.07 1.22 6.68 37.31 0.25 1.46 16 25 O -0.39 -6.77 10.77 -35.23 -0.38 -7.15 16 26 C 0.07 1.01 6.67 37.20 0.25 1.26 16 27 C -0.15 -2.19 4.80 -26.59 -0.13 -2.32 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.38 8.72 6.81 -40.82 -0.28 8.44 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 1.33 7.47 -51.93 -0.39 0.94 16 32 H 0.40 6.36 7.42 -40.82 -0.30 6.05 16 33 H 0.12 1.77 7.24 -51.92 -0.38 1.40 16 34 H 0.11 0.98 8.03 -51.93 -0.42 0.56 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.72 8.13 -51.93 -0.42 0.30 16 37 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 38 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.08 1.44 7.19 -51.93 -0.37 1.07 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 44 H 0.07 1.42 7.75 -51.93 -0.40 1.02 16 45 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.06 1.04 7.14 -51.93 -0.37 0.67 16 47 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.07 0.92 7.37 -51.93 -0.38 0.54 16 LS Contribution 384.10 15.07 5.79 5.79 Total: -1.00 -33.68 384.10 -7.18 -40.86 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -7.43 Total: 13.55 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: 0.22 Total: 15.46 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: -0.16 Total: -60.44 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -0.58 Total: -32.30 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.68 -7.18 -40.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671934900.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.045 kcal (2) G-P(sol) polarization free energy of solvation -33.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds