Wall clock time and date at job start Sat Apr 11 2020 06:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00515 * 2 1 4 4 H 1.48503 * 109.46740 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47499 * 119.99938 * 3 2 1 6 6 H 1.48504 * 109.47201 * 240.00378 * 3 2 1 7 7 C 1.38820 * 119.99467 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99839 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00190 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00285 * 174.07144 * 9 7 2 11 11 C 1.52998 * 109.54327 * 62.21846 * 10 9 7 12 12 N 1.46499 * 109.47164 * 54.84832 * 11 10 9 13 13 C 1.34779 * 120.00214 * 176.66455 * 12 11 10 14 14 O 1.21278 * 119.99688 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00128 * 180.02562 * 13 12 11 16 16 N 1.46503 * 109.47229 * 179.97438 * 15 13 12 17 17 C 1.46090 * 118.72582 * 269.73243 * 16 15 13 18 18 C 1.53216 * 109.82212 * 161.46719 * 17 16 15 19 19 O 1.43243 * 108.51359 * 49.53754 * 18 17 16 20 20 C 1.42965 * 112.99029 * 291.46049 * 19 18 17 21 21 C 1.33871 * 118.72663 * 90.00208 * 16 15 13 22 22 O 1.21282 * 118.83520 * 1.87978 * 21 16 15 23 23 C 1.53177 * 109.54184 * 302.04562 * 10 9 7 24 24 C 1.53285 * 109.06031 * 297.02638 * 23 10 9 25 25 O 1.42900 * 109.46053 * 302.44532 * 24 23 10 26 26 C 1.42904 * 114.09943 * 61.15813 * 25 24 23 27 27 C 1.53087 * 109.41425 * 298.84255 * 26 25 24 28 28 H 0.97000 * 119.99280 * 359.97438 * 1 2 3 29 29 H 0.97006 * 119.99870 * 354.06882 * 9 7 2 30 30 H 1.08999 * 109.47222 * 174.85004 * 11 10 9 31 31 H 1.09005 * 109.46947 * 294.85379 * 11 10 9 32 32 H 0.97003 * 120.00300 * 356.66303 * 12 11 10 33 33 H 1.09007 * 109.47226 * 299.99828 * 15 13 12 34 34 H 1.09001 * 109.47137 * 59.99699 * 15 13 12 35 35 H 1.09002 * 109.39699 * 281.77639 * 17 16 15 36 36 H 1.09001 * 109.39632 * 41.50635 * 17 16 15 37 37 H 1.09000 * 109.82449 * 289.74871 * 18 17 16 38 38 H 1.08999 * 109.67015 * 169.23795 * 18 17 16 39 39 H 1.08998 * 109.41533 * 289.49711 * 20 19 18 40 40 H 1.09005 * 109.36369 * 169.66276 * 20 19 18 41 41 H 1.09001 * 109.52689 * 57.01350 * 23 10 9 42 42 H 1.08998 * 109.52129 * 177.20594 * 23 10 9 43 43 H 1.09007 * 109.45488 * 182.44942 * 24 23 10 44 44 H 1.09001 * 109.46894 * 62.45037 * 24 23 10 45 45 H 1.08998 * 109.48150 * 178.85483 * 26 25 24 46 46 H 1.09003 * 109.48614 * 58.82955 * 26 25 24 47 47 H 1.08995 * 109.52701 * 297.70105 * 27 26 25 48 48 H 1.09004 * 109.57496 * 177.54261 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6963 1.2124 6 1 3.1041 1.6963 -1.2126 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2024 0.0001 9 7 1.3255 -2.3881 0.0016 10 6 2.0519 -3.6536 -0.1289 11 6 3.0008 -3.8239 1.0592 12 7 2.2445 -3.7084 2.3086 13 6 2.8645 -3.8923 3.4911 14 8 4.0486 -4.1529 3.5208 15 6 2.0865 -3.7740 4.7762 16 7 2.9797 -4.0165 5.9119 17 6 3.1287 -5.3821 6.4089 18 6 4.4046 -5.4926 7.2500 19 8 4.4155 -4.4227 8.2025 20 6 4.5897 -3.1389 7.5981 21 6 3.6234 -2.9772 6.4576 22 8 3.4197 -1.8660 6.0165 23 6 2.8576 -3.6499 -1.4316 24 6 1.8910 -3.5581 -2.6177 25 8 0.9720 -4.6512 -2.5687 26 6 0.1597 -4.6784 -1.3933 27 6 1.0549 -4.8161 -0.1591 28 1 -0.4849 0.8401 0.0004 29 1 0.3594 -2.3902 0.0888 30 1 3.4727 -4.8052 1.0095 31 1 3.7675 -3.0498 1.0257 32 1 1.2976 -3.4995 2.2849 33 1 1.6631 -2.7725 4.8539 34 1 1.2824 -4.5099 4.7832 35 1 2.2643 -5.6412 7.0204 36 1 3.1927 -6.0694 5.5653 37 1 5.2801 -5.4171 6.6052 38 1 4.4172 -6.4485 7.7736 39 1 5.6097 -3.0498 7.2241 40 1 4.4069 -2.3621 8.3406 41 1 3.5314 -2.7931 -1.4409 42 1 3.4366 -4.5705 -1.5044 43 1 2.4550 -3.5988 -3.5497 44 1 1.3412 -2.6183 -2.5664 45 1 -0.5237 -5.5260 -1.4432 46 1 -0.4129 -3.7533 -1.3256 47 1 1.5976 -5.7602 -0.2062 48 1 0.4413 -4.7932 0.7415 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671934900.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:39 Heat of formation + Delta-G solvation = -161.546255 kcal Electronic energy + Delta-G solvation = -31621.448109 eV Core-core repulsion = 27290.221674 eV Total energy + Delta-G solvation = -4331.226435 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.94292 -40.97621 -39.99960 -38.75232 -37.35645 -36.36142 -35.13838 -33.89847 -31.97764 -31.43244 -30.98015 -30.44803 -28.35437 -26.70808 -25.93769 -24.89512 -24.41867 -23.43628 -21.58867 -20.29641 -20.05885 -19.16859 -18.78818 -18.53033 -18.13409 -17.21454 -16.94576 -16.91630 -16.74314 -16.55476 -16.23329 -16.10165 -15.78873 -15.63900 -15.37685 -15.35446 -15.02741 -14.57133 -14.39074 -14.15777 -14.01581 -13.79722 -13.70038 -13.17476 -13.07943 -12.87073 -12.86108 -12.81039 -12.71010 -12.31570 -12.29693 -12.11825 -11.78066 -11.65158 -11.43450 -11.19525 -11.14854 -10.99592 -10.56969 -10.33966 -9.97105 -9.87665 -9.00053 -7.94916 -5.20488 1.26168 1.41160 1.44662 1.47699 1.60840 1.66358 2.40388 2.53877 2.74036 3.07363 3.26230 3.38366 3.72790 3.74145 3.82120 3.87405 3.98118 4.02357 4.11631 4.14503 4.17994 4.23205 4.35215 4.39140 4.47674 4.48159 4.58937 4.69862 4.73877 4.76344 4.80647 4.82545 4.88493 5.02809 5.08420 5.09641 5.21201 5.26868 5.33557 5.52860 5.59263 5.72120 6.20643 6.27670 6.36565 6.58666 6.88495 7.24094 7.37498 8.06158 8.32877 9.26675 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011517 B = 0.003531 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.578102 B = 7928.395643 C = 9636.672783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.056 4.056 3 Si 0.944 3.056 4 H -0.296 1.296 5 H -0.297 1.297 6 H -0.281 1.281 7 C -0.215 4.215 8 H 0.060 0.940 9 N -0.711 5.711 10 C 0.187 3.813 11 C 0.129 3.871 12 N -0.695 5.695 13 C 0.493 3.507 14 O -0.585 6.585 15 C 0.092 3.908 16 N -0.587 5.587 17 C 0.077 3.923 18 C 0.041 3.959 19 O -0.374 6.374 20 C 0.061 3.939 21 C 0.477 3.523 22 O -0.590 6.590 23 C -0.150 4.150 24 C 0.076 3.924 25 O -0.397 6.397 26 C 0.063 3.937 27 C -0.140 4.140 28 H 0.248 0.752 29 H 0.378 0.622 30 H 0.069 0.931 31 H 0.026 0.974 32 H 0.408 0.592 33 H 0.099 0.901 34 H 0.154 0.846 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.058 0.942 38 H 0.152 0.848 39 H 0.099 0.901 40 H 0.144 0.856 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.098 0.902 44 H 0.034 0.966 45 H 0.114 0.886 46 H 0.036 0.964 47 H 0.090 0.910 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.982 -17.735 11.142 21.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.249 4.249 3 Si 0.776 3.224 4 H -0.222 1.222 5 H -0.225 1.225 6 H -0.207 1.207 7 C -0.347 4.347 8 H 0.078 0.922 9 N -0.352 5.352 10 C 0.096 3.904 11 C 0.002 3.998 12 N -0.345 5.345 13 C 0.278 3.722 14 O -0.466 6.466 15 C -0.035 4.035 16 N -0.318 5.318 17 C -0.044 4.044 18 C -0.035 4.035 19 O -0.292 6.292 20 C -0.018 4.018 21 C 0.266 3.734 22 O -0.471 6.471 23 C -0.190 4.190 24 C -0.001 4.001 25 O -0.316 6.316 26 C -0.013 4.013 27 C -0.178 4.178 28 H 0.057 0.943 29 H 0.212 0.788 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.245 0.755 33 H 0.118 0.882 34 H 0.171 0.829 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.077 0.923 38 H 0.170 0.830 39 H 0.117 0.883 40 H 0.162 0.838 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.116 0.884 44 H 0.052 0.948 45 H 0.132 0.868 46 H 0.054 0.946 47 H 0.109 0.891 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.799 -17.409 10.981 20.930 hybrid contribution -0.069 2.175 -0.417 2.216 sum 3.730 -15.233 10.565 18.910 Atomic orbital electron populations 1.69720 1.05676 1.25568 1.59587 1.25132 0.95978 0.99539 1.04259 0.85668 0.77586 0.81767 0.77416 1.22184 1.22459 1.20690 1.19094 0.90612 0.84932 1.40096 0.92185 1.42472 1.05848 0.99932 1.86997 1.20039 0.91876 0.86816 0.91680 1.21629 0.94389 0.99450 0.84347 1.45707 1.13982 1.69793 1.05060 1.21509 0.88045 0.76083 0.86516 1.90616 1.17113 1.50825 1.88062 1.21431 0.93072 1.06297 0.82672 1.47241 1.44784 1.09135 1.30683 1.22534 1.01051 0.81003 0.99809 1.23280 0.95862 0.92536 0.91865 1.88167 1.93872 1.14253 1.32956 1.22790 0.97332 0.88203 0.93523 1.21770 0.81904 0.84119 0.85582 1.90771 1.65127 1.26375 1.64815 1.22450 0.98671 1.01810 0.96058 1.22374 0.90618 0.88940 0.98130 1.87796 1.52668 1.49063 1.42072 1.22605 0.92572 1.01896 0.84269 1.22293 0.98322 0.97804 0.99383 0.94258 0.78760 0.91259 0.95569 0.75548 0.88246 0.82877 0.87779 0.88566 0.92332 0.83014 0.88302 0.83813 0.92490 0.90286 0.88422 0.94768 0.86809 0.94565 0.89128 0.89668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.65 13.07 21.65 0.28 -54.37 16 2 C -0.06 -3.05 5.50 84.86 0.47 -2.58 16 3 Si 0.94 46.60 29.55 68.60 2.03 48.63 16 4 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 5 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 6 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 7 C -0.22 -10.97 8.67 84.04 0.73 -10.24 16 8 H 0.06 3.15 6.78 -2.91 -0.02 3.13 16 9 N -0.71 -30.35 3.61 -302.81 -1.09 -31.44 16 10 C 0.19 6.28 0.41 3.72 0.00 6.28 16 11 C 0.13 4.45 4.37 86.38 0.38 4.82 16 12 N -0.69 -22.36 5.13 -463.06 -2.38 -24.74 16 13 C 0.49 16.14 7.89 87.66 0.69 16.83 16 14 O -0.59 -23.06 16.43 -3.02 -0.05 -23.10 16 15 C 0.09 2.33 5.80 85.63 0.50 2.83 16 16 N -0.59 -14.34 2.32 -828.56 -1.92 -16.26 16 17 C 0.08 1.13 6.63 86.53 0.57 1.70 16 18 C 0.04 0.54 6.91 72.05 0.50 1.03 16 19 O -0.37 -6.63 10.85 -148.98 -1.62 -8.25 16 20 C 0.06 1.27 6.98 71.13 0.50 1.76 16 21 C 0.48 14.11 7.58 87.69 0.66 14.77 16 22 O -0.59 -23.59 16.36 -3.04 -0.05 -23.64 16 23 C -0.15 -4.99 4.80 30.75 0.15 -4.84 16 24 C 0.08 2.57 6.68 72.08 0.48 3.05 16 25 O -0.40 -12.80 10.77 -148.98 -1.60 -14.41 16 26 C 0.06 1.79 6.67 72.01 0.48 2.27 16 27 C -0.14 -3.70 4.80 30.68 0.15 -3.55 16 28 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 29 H 0.38 17.26 6.81 -92.70 -0.63 16.62 16 30 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.03 1.10 7.47 -2.38 -0.02 1.08 16 32 H 0.41 12.39 7.42 -92.71 -0.69 11.70 16 33 H 0.10 2.99 7.24 -2.38 -0.02 2.98 16 34 H 0.15 2.34 8.03 -2.39 -0.02 2.32 16 35 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.10 1.27 8.13 -2.39 -0.02 1.25 16 37 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 38 H 0.15 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.14 2.53 8.14 -2.38 -0.02 2.51 16 41 H 0.06 2.12 7.19 -2.39 -0.02 2.11 16 42 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.10 2.87 8.14 -2.38 -0.02 2.86 16 44 H 0.03 1.40 7.75 -2.39 -0.02 1.38 16 45 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 46 H 0.04 1.22 7.14 -2.39 -0.02 1.20 16 47 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.08 2.00 7.37 -2.39 -0.02 1.99 16 Total: -1.00 -75.95 384.10 -0.48 -76.43 By element: Atomic # 1 Polarization: 37.34 SS G_CDS: -0.33 Total: 37.01 kcal Atomic # 6 Polarization: 27.90 SS G_CDS: 6.25 Total: 34.15 kcal Atomic # 7 Polarization: -121.70 SS G_CDS: -5.11 Total: -126.81 kcal Atomic # 8 Polarization: -66.09 SS G_CDS: -3.32 Total: -69.41 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -75.95 -0.48 -76.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671934900.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.120 kcal (2) G-P(sol) polarization free energy of solvation -75.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds