Wall clock time and date at job start Sat Apr 11 2020 06:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 119.99610 * 2 1 4 4 H 1.48502 * 109.47097 * 240.00367 * 3 2 1 5 5 H 1.48504 * 109.47415 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47173 * 120.00375 * 3 2 1 7 7 C 1.38947 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99647 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00195 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99927 * 180.27719 * 9 7 2 11 11 O 1.21288 * 119.99699 * 359.72011 * 10 9 7 12 12 C 1.50703 * 119.99741 * 179.71933 * 10 9 7 13 13 N 1.46498 * 109.46810 * 179.97438 * 12 10 9 14 14 C 1.34775 * 119.99863 * 180.02562 * 13 12 10 15 15 O 1.21580 * 119.99946 * 355.01806 * 14 13 12 16 16 N 1.34777 * 119.99957 * 175.02166 * 14 13 12 17 17 C 1.46931 * 120.64502 * 184.94828 * 16 14 13 18 18 C 1.52722 * 109.02507 * 233.60838 * 17 16 14 19 19 C 1.53036 * 109.41718 * 305.61489 * 18 17 16 20 20 C 1.53015 * 109.57246 * 61.13877 * 19 18 17 21 21 C 1.46935 * 120.64939 * 5.22408 * 16 14 13 22 22 C 1.53091 * 109.38260 * 181.09446 * 19 18 17 23 23 C 1.53167 * 109.18591 * 177.47541 * 22 19 18 24 24 H 1.09000 * 109.62185 * 62.93614 * 23 22 19 25 25 O 1.42903 * 109.54570 * 183.16007 * 23 22 19 26 26 C 1.53185 * 109.02776 * 303.02118 * 23 22 19 27 27 C 1.53086 * 109.14071 * 57.02682 * 26 23 22 28 28 O 1.42881 * 109.48844 * 301.01720 * 19 18 17 29 29 H 0.97000 * 120.00348 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99704 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47347 * 300.00095 * 12 10 9 32 32 H 1.09000 * 109.46686 * 60.00241 * 12 10 9 33 33 H 0.97005 * 120.00059 * 0.02562 * 13 12 10 34 34 H 1.08998 * 109.59102 * 353.44575 * 17 16 14 35 35 H 1.09004 * 109.58785 * 113.88064 * 17 16 14 36 36 H 1.08993 * 109.56619 * 185.55814 * 18 17 16 37 37 H 1.09007 * 109.36221 * 65.53784 * 18 17 16 38 38 H 1.08994 * 109.49520 * 178.77586 * 20 19 18 39 39 H 1.09003 * 109.48940 * 58.69815 * 20 19 18 40 40 H 1.09002 * 109.58040 * 246.14141 * 21 16 14 41 41 H 1.09009 * 109.58167 * 6.41690 * 21 16 14 42 42 H 1.09004 * 109.51354 * 297.38783 * 22 19 18 43 43 H 1.09000 * 109.51844 * 57.55761 * 22 19 18 44 44 H 0.96698 * 114.00291 * 179.55179 * 25 23 22 45 45 H 1.08995 * 109.53091 * 297.12170 * 26 23 22 46 46 H 1.09003 * 109.52287 * 176.92127 * 26 23 22 47 47 H 1.09001 * 109.47926 * 182.37976 * 27 26 23 48 48 H 1.09000 * 109.48402 * 62.35621 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6966 -1.2126 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9974 -3.5578 0.0035 11 8 3.2103 -3.5577 0.0039 12 6 1.2439 -4.8629 0.0088 13 7 2.1959 -5.9764 0.0131 14 6 1.7467 -7.2470 0.0177 15 8 0.5551 -7.4702 0.1096 16 7 2.6185 -8.2703 -0.0796 17 6 2.1390 -9.6552 -0.1849 18 6 2.8045 -10.4965 0.9022 19 6 4.3243 -10.3479 0.8014 20 6 4.7115 -8.8831 1.0153 21 6 4.0669 -8.0233 -0.0763 22 6 4.9916 -11.2129 1.8740 23 6 6.5129 -11.1102 1.7288 24 1 6.8287 -10.0817 1.9037 25 8 7.1430 -11.9718 2.6789 26 6 6.9090 -11.5340 0.3111 27 6 6.1688 -10.6554 -0.7007 28 8 4.7602 -10.7728 -0.4912 29 1 -0.4851 0.8400 0.0004 30 1 0.3535 -2.3906 -0.0016 31 1 0.6169 -4.9170 0.8987 32 1 0.6176 -4.9243 -0.8812 33 1 3.1496 -5.7991 0.0127 34 1 1.0574 -9.6786 -0.0520 35 1 2.3978 -10.0581 -1.1641 36 1 2.5319 -11.5436 0.7715 37 1 2.4696 -10.1528 1.8809 38 1 5.7956 -8.7823 0.9650 39 1 4.3602 -8.5532 1.9930 40 1 4.4852 -8.2906 -1.0467 41 1 4.2573 -6.9692 0.1258 42 1 4.6953 -10.8605 2.8621 43 1 4.6829 -12.2507 1.7489 44 1 8.1091 -11.9623 2.6385 45 1 6.6383 -12.5780 0.1538 46 1 7.9844 -11.4119 0.1815 47 1 6.4141 -10.9799 -1.7120 48 1 6.4705 -9.6163 -0.5692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672533098.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:54 Heat of formation + Delta-G solvation = -156.713537 kcal Electronic energy + Delta-G solvation = -30703.090308 eV Core-core repulsion = 26372.073435 eV Total energy + Delta-G solvation = -4331.016873 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.17974 -39.77201 -38.26346 -37.36375 -36.12964 -34.50160 -33.77769 -33.11132 -32.35599 -31.38290 -31.19156 -29.15267 -27.34261 -24.88680 -24.39750 -23.75468 -23.69766 -21.57526 -20.01559 -19.66257 -19.39481 -18.46889 -17.93935 -17.74688 -16.46263 -16.18044 -16.01885 -15.64700 -15.48365 -15.38593 -14.93951 -14.74101 -14.49706 -14.36967 -14.28381 -13.90139 -13.75749 -13.51256 -13.50758 -13.19325 -12.71569 -12.54815 -12.36275 -12.14887 -12.11319 -11.89002 -11.63886 -11.61826 -11.43113 -11.27062 -11.10555 -11.07764 -10.59550 -10.50996 -10.31366 -10.17761 -9.95295 -9.83246 -9.62583 -8.90253 -8.62289 -8.40865 -8.09721 -6.50990 -3.93139 2.73843 3.13499 3.21337 3.25026 3.30831 3.40441 3.64037 3.75611 3.99356 4.14790 4.20793 4.25623 4.37053 4.46990 4.59549 4.66607 4.82204 4.88130 4.92711 4.93676 5.09485 5.17595 5.18294 5.23439 5.27125 5.35942 5.40039 5.49698 5.52023 5.59121 5.65031 5.73445 5.77038 5.83984 5.94606 6.01195 6.04423 6.09373 6.51914 6.77903 6.88337 7.08619 7.16186 7.45872 7.92467 8.18243 8.45609 8.80395 9.04734 9.39932 9.87822 10.65822 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019901 B = 0.002150 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.632062 B =13022.048865 C =13869.071030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.429 3.571 11 O -0.600 6.600 12 C 0.127 3.873 13 N -0.726 5.726 14 C 0.709 3.291 15 O -0.596 6.596 16 N -0.629 5.629 17 C 0.135 3.865 18 C -0.118 4.118 19 C 0.126 3.874 20 C -0.164 4.164 21 C 0.116 3.884 22 C -0.135 4.135 23 C 0.101 3.899 24 H 0.060 0.940 25 O -0.566 6.566 26 C -0.188 4.188 27 C 0.059 3.941 28 O -0.364 6.364 29 H 0.275 0.725 30 H 0.396 0.604 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.405 0.595 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.378 0.622 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.097 0.903 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.737 -23.179 1.089 26.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.122 0.878 9 N -0.184 5.184 10 C 0.215 3.785 11 O -0.486 6.486 12 C -0.001 4.001 13 N -0.385 5.385 14 C 0.410 3.590 15 O -0.475 6.475 16 N -0.367 5.367 17 C 0.012 3.988 18 C -0.157 4.157 19 C 0.086 3.914 20 C -0.202 4.202 21 C -0.008 4.008 22 C -0.172 4.172 23 C 0.043 3.957 24 H 0.078 0.922 25 O -0.372 6.372 26 C -0.226 4.226 27 C -0.018 4.018 28 O -0.283 6.283 29 H 0.085 0.915 30 H 0.230 0.770 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.245 0.755 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.225 0.775 45 H 0.098 0.902 46 H 0.093 0.907 47 H 0.115 0.885 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.745 -23.301 1.148 25.684 hybrid contribution 1.251 1.161 0.075 1.709 sum 11.996 -22.139 1.223 25.210 Atomic orbital electron populations 1.69607 1.05995 1.28627 1.49223 1.25325 0.95670 0.99919 0.96810 0.85873 0.78773 0.80185 0.79121 1.19791 1.20853 1.19804 1.19669 0.93406 0.82018 1.48386 0.87765 1.41783 1.09506 1.04440 1.62626 1.19765 0.88275 0.85017 0.85466 1.90476 1.13795 1.86898 1.57479 1.20791 0.91287 0.84904 1.03140 1.44970 1.11215 1.03388 1.78952 1.15750 0.84832 0.80578 0.77849 1.90885 1.14236 1.83925 1.58453 1.47161 1.05258 1.05937 1.78343 1.21245 1.00187 0.79051 0.98336 1.21869 0.91618 1.01403 1.00765 1.21381 0.94917 0.92101 0.82999 1.22601 1.01343 0.95400 1.00883 1.21519 0.80550 0.99755 0.98950 1.22158 0.93109 1.01918 1.00064 1.21888 0.93562 0.93008 0.87267 0.92223 1.86530 1.24147 1.67546 1.58958 1.22959 1.01108 1.02259 0.96324 1.22539 0.81358 0.98769 0.99124 1.87996 1.22074 1.85775 1.32457 0.91531 0.76990 0.89964 0.90080 0.75470 0.88662 0.91024 0.89761 0.89899 0.90204 0.89938 0.90935 0.89756 0.90104 0.90126 0.77487 0.90191 0.90702 0.88465 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.89 13.05 55.50 0.72 -23.17 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.49 29.55 -169.99 -5.02 15.47 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.31 -8.28 9.68 -14.94 -0.14 -8.43 16 8 H 0.10 2.93 7.16 -52.48 -0.38 2.56 16 9 N -0.55 -13.65 5.29 -10.96 -0.06 -13.71 16 10 C 0.43 9.89 7.85 -10.98 -0.09 9.80 16 11 O -0.60 -15.27 15.24 5.55 0.08 -15.19 16 12 C 0.13 2.41 6.16 -5.19 -0.03 2.38 16 13 N -0.73 -12.64 5.44 -66.42 -0.36 -13.00 16 14 C 0.71 12.01 8.30 -86.92 -0.72 11.29 16 15 O -0.60 -11.88 15.77 5.30 0.08 -11.79 16 16 N -0.63 -8.26 2.98 -178.78 -0.53 -8.79 16 17 C 0.13 1.52 6.18 -3.95 -0.02 1.50 16 18 C -0.12 -1.06 5.09 -26.86 -0.14 -1.20 16 19 C 0.13 1.06 0.68 -90.55 -0.06 1.00 16 20 C -0.16 -1.42 4.20 -26.63 -0.11 -1.53 16 21 C 0.12 1.24 6.16 -3.71 -0.02 1.22 16 22 C -0.13 -1.08 4.56 -26.60 -0.12 -1.20 16 23 C 0.10 0.71 3.25 -26.55 -0.09 0.62 16 24 H 0.06 0.39 6.60 -51.93 -0.34 0.05 16 25 O -0.57 -4.30 13.33 -35.23 -0.47 -4.77 16 26 C -0.19 -1.11 5.76 -26.59 -0.15 -1.27 16 27 C 0.06 0.39 6.51 37.20 0.24 0.63 16 28 O -0.36 -3.23 8.99 -35.23 -0.32 -3.55 16 29 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.40 9.49 7.90 -40.82 -0.32 9.17 16 31 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.41 6.87 4.93 -40.82 -0.20 6.67 16 34 H 0.10 1.20 7.00 -51.93 -0.36 0.84 16 35 H 0.07 0.78 7.82 -51.93 -0.41 0.37 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 38 H 0.08 0.58 4.99 -51.93 -0.26 0.32 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.73 7.82 -51.93 -0.41 0.33 16 41 H 0.08 0.96 5.64 -51.92 -0.29 0.67 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.38 1.29 9.08 45.56 0.41 1.71 16 45 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.35 6.38 -51.93 -0.33 0.02 16 LS Contribution 375.88 15.07 5.66 5.66 Total: -1.00 -33.18 375.88 -8.01 -41.19 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -6.25 Total: 16.25 kcal Atomic # 6 Polarization: 16.95 SS G_CDS: -1.56 Total: 15.39 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.23 Total: -58.67 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -0.62 Total: -35.30 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.18 -8.01 -41.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672533098.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.523 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds