Wall clock time and date at job start Sat Apr 11 2020 06:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 119.99610 * 2 1 4 4 H 1.48502 * 109.47097 * 240.00367 * 3 2 1 5 5 H 1.48504 * 109.47415 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47173 * 120.00375 * 3 2 1 7 7 C 1.38947 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99647 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00195 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99927 * 180.27719 * 9 7 2 11 11 O 1.21288 * 119.99699 * 359.72011 * 10 9 7 12 12 C 1.50703 * 119.99741 * 179.71933 * 10 9 7 13 13 N 1.46498 * 109.46810 * 179.97438 * 12 10 9 14 14 C 1.34775 * 119.99863 * 180.02562 * 13 12 10 15 15 O 1.21580 * 119.99946 * 355.01806 * 14 13 12 16 16 N 1.34777 * 119.99957 * 175.02166 * 14 13 12 17 17 C 1.46931 * 120.64502 * 184.94828 * 16 14 13 18 18 C 1.52722 * 109.02507 * 233.60838 * 17 16 14 19 19 C 1.53036 * 109.41718 * 305.61489 * 18 17 16 20 20 C 1.53015 * 109.57246 * 61.13877 * 19 18 17 21 21 C 1.46935 * 120.64939 * 5.22408 * 16 14 13 22 22 C 1.53091 * 109.38260 * 181.09446 * 19 18 17 23 23 C 1.53167 * 109.18591 * 177.47541 * 22 19 18 24 24 H 1.09000 * 109.62185 * 62.93614 * 23 22 19 25 25 O 1.42903 * 109.54570 * 183.16007 * 23 22 19 26 26 C 1.53185 * 109.02776 * 303.02118 * 23 22 19 27 27 C 1.53086 * 109.14071 * 57.02682 * 26 23 22 28 28 O 1.42881 * 109.48844 * 301.01720 * 19 18 17 29 29 H 0.97000 * 120.00348 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99704 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47347 * 300.00095 * 12 10 9 32 32 H 1.09000 * 109.46686 * 60.00241 * 12 10 9 33 33 H 0.97005 * 120.00059 * 0.02562 * 13 12 10 34 34 H 1.08998 * 109.59102 * 353.44575 * 17 16 14 35 35 H 1.09004 * 109.58785 * 113.88064 * 17 16 14 36 36 H 1.08993 * 109.56619 * 185.55814 * 18 17 16 37 37 H 1.09007 * 109.36221 * 65.53784 * 18 17 16 38 38 H 1.08994 * 109.49520 * 178.77586 * 20 19 18 39 39 H 1.09003 * 109.48940 * 58.69815 * 20 19 18 40 40 H 1.09002 * 109.58040 * 246.14141 * 21 16 14 41 41 H 1.09009 * 109.58167 * 6.41690 * 21 16 14 42 42 H 1.09004 * 109.51354 * 297.38783 * 22 19 18 43 43 H 1.09000 * 109.51844 * 57.55761 * 22 19 18 44 44 H 0.96698 * 114.00291 * 179.55179 * 25 23 22 45 45 H 1.08995 * 109.53091 * 297.12170 * 26 23 22 46 46 H 1.09003 * 109.52287 * 176.92127 * 26 23 22 47 47 H 1.09001 * 109.47926 * 182.37976 * 27 26 23 48 48 H 1.09000 * 109.48402 * 62.35621 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6966 -1.2126 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9974 -3.5578 0.0035 11 8 3.2103 -3.5577 0.0039 12 6 1.2439 -4.8629 0.0088 13 7 2.1959 -5.9764 0.0131 14 6 1.7467 -7.2470 0.0177 15 8 0.5551 -7.4702 0.1096 16 7 2.6185 -8.2703 -0.0796 17 6 2.1390 -9.6552 -0.1849 18 6 2.8045 -10.4965 0.9022 19 6 4.3243 -10.3479 0.8014 20 6 4.7115 -8.8831 1.0153 21 6 4.0669 -8.0233 -0.0763 22 6 4.9916 -11.2129 1.8740 23 6 6.5129 -11.1102 1.7288 24 1 6.8287 -10.0817 1.9037 25 8 7.1430 -11.9718 2.6789 26 6 6.9090 -11.5340 0.3111 27 6 6.1688 -10.6554 -0.7007 28 8 4.7602 -10.7728 -0.4912 29 1 -0.4851 0.8400 0.0004 30 1 0.3535 -2.3906 -0.0016 31 1 0.6169 -4.9170 0.8987 32 1 0.6176 -4.9243 -0.8812 33 1 3.1496 -5.7991 0.0127 34 1 1.0574 -9.6786 -0.0520 35 1 2.3978 -10.0581 -1.1641 36 1 2.5319 -11.5436 0.7715 37 1 2.4696 -10.1528 1.8809 38 1 5.7956 -8.7823 0.9650 39 1 4.3602 -8.5532 1.9930 40 1 4.4852 -8.2906 -1.0467 41 1 4.2573 -6.9692 0.1258 42 1 4.6953 -10.8605 2.8621 43 1 4.6829 -12.2507 1.7489 44 1 8.1091 -11.9623 2.6385 45 1 6.6383 -12.5780 0.1538 46 1 7.9844 -11.4119 0.1815 47 1 6.4141 -10.9799 -1.7120 48 1 6.4705 -9.6163 -0.5692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672533098.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:53 Heat of formation + Delta-G solvation = -183.169172 kcal Electronic energy + Delta-G solvation = -30704.237510 eV Core-core repulsion = 26372.073435 eV Total energy + Delta-G solvation = -4332.164075 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.01127 -40.95248 -40.01335 -38.09192 -36.99239 -36.26799 -35.41324 -33.96087 -33.36326 -32.96217 -32.02516 -30.10295 -28.77469 -26.47497 -25.31026 -24.63361 -24.42569 -22.44149 -21.39686 -20.94938 -20.38660 -20.06593 -19.38546 -18.38970 -17.56173 -17.24653 -17.09220 -16.95975 -16.71985 -16.40042 -16.07797 -15.99966 -15.79351 -15.52470 -15.26283 -15.16441 -14.81663 -14.74337 -14.32036 -14.03835 -13.89912 -13.62902 -13.53389 -13.42706 -13.16341 -13.04666 -12.88767 -12.76897 -12.46395 -12.32369 -12.20328 -12.13241 -11.99264 -11.68356 -11.55722 -11.29380 -11.21222 -10.72069 -10.55720 -10.49511 -10.30404 -10.09204 -9.52390 -8.50155 -6.00568 1.38579 1.42495 1.50794 1.56833 1.89707 2.06905 2.28381 2.72658 2.82232 3.13091 3.15166 3.16975 3.56859 3.63339 3.74524 3.90025 3.96825 4.04972 4.14483 4.19654 4.24776 4.32224 4.36388 4.41392 4.45866 4.47394 4.51937 4.68219 4.72604 4.79705 4.83199 4.85061 4.90078 4.97240 5.00900 5.07452 5.22983 5.29487 5.31110 5.39009 5.52132 5.88339 5.92530 6.29222 6.48282 6.84296 6.88254 7.03644 7.41437 7.49579 7.94399 8.66508 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019901 B = 0.002150 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.632062 B =13022.048865 C =13869.071030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.434 3.566 11 O -0.624 6.624 12 C 0.140 3.860 13 N -0.726 5.726 14 C 0.706 3.294 15 O -0.629 6.629 16 N -0.622 5.622 17 C 0.134 3.866 18 C -0.114 4.114 19 C 0.132 3.868 20 C -0.159 4.159 21 C 0.113 3.887 22 C -0.133 4.133 23 C 0.101 3.899 24 H 0.067 0.933 25 O -0.585 6.585 26 C -0.181 4.181 27 C 0.052 3.948 28 O -0.379 6.379 29 H 0.280 0.720 30 H 0.399 0.601 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.408 0.592 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.395 0.605 45 H 0.069 0.931 46 H 0.096 0.904 47 H 0.108 0.892 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.263 -23.672 1.004 27.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.222 3.778 11 O -0.512 6.512 12 C 0.012 3.988 13 N -0.386 5.386 14 C 0.407 3.593 15 O -0.511 6.511 16 N -0.359 5.359 17 C 0.012 3.988 18 C -0.152 4.152 19 C 0.092 3.908 20 C -0.197 4.197 21 C -0.010 4.010 22 C -0.171 4.171 23 C 0.042 3.958 24 H 0.085 0.915 25 O -0.393 6.393 26 C -0.218 4.218 27 C -0.024 4.024 28 O -0.298 6.298 29 H 0.089 0.911 30 H 0.233 0.767 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.249 0.751 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.118 0.882 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.245 0.755 45 H 0.088 0.912 46 H 0.114 0.886 47 H 0.126 0.874 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.308 -23.837 1.060 26.848 hybrid contribution 0.821 1.208 0.085 1.463 sum 13.130 -22.629 1.145 26.187 Atomic orbital electron populations 1.69678 1.07031 1.29704 1.49202 1.26146 0.96545 1.02726 0.95790 0.84920 0.77705 0.76186 0.79125 1.19423 1.19706 1.19453 1.19703 0.92982 0.83478 1.50459 0.89475 1.41833 1.09607 1.04587 1.63397 1.20367 0.88104 0.85826 0.83553 1.90452 1.15105 1.87542 1.58074 1.20598 0.91062 0.83196 1.03990 1.44901 1.11017 1.03323 1.79364 1.15863 0.84828 0.80850 0.77744 1.90858 1.15800 1.84390 1.60053 1.47251 1.05961 1.05735 1.76910 1.21347 0.99536 0.78307 0.99634 1.21835 0.92173 1.01623 0.99613 1.21256 0.94314 0.91900 0.83314 1.22577 1.02334 0.95108 0.99677 1.21682 0.79047 0.99843 1.00383 1.22102 0.94203 1.01245 0.99549 1.21893 0.92724 0.93360 0.87828 0.91510 1.86486 1.25895 1.67721 1.59228 1.22888 1.02293 1.01387 0.95276 1.22733 0.80251 0.99437 0.99980 1.87977 1.23577 1.85869 1.32375 0.91069 0.76705 0.89148 0.89092 0.75140 0.90245 0.90313 0.88384 0.90218 0.88220 0.90462 0.89837 0.90526 0.90516 0.90823 0.75488 0.91177 0.88591 0.87395 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.73 13.05 21.66 0.28 -48.44 16 2 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 3 Si 1.00 41.53 29.55 68.60 2.03 43.55 16 4 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 6 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.34 -18.50 9.68 84.04 0.81 -17.68 16 8 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 9 N -0.56 -28.15 5.29 -306.98 -1.62 -29.77 16 10 C 0.43 20.16 7.85 87.66 0.69 20.85 16 11 O -0.62 -32.00 15.24 -3.06 -0.05 -32.05 16 12 C 0.14 5.30 6.16 85.63 0.53 5.82 16 13 N -0.73 -25.12 5.44 -482.31 -2.62 -27.74 16 14 C 0.71 23.79 8.30 179.05 1.49 25.27 16 15 O -0.63 -25.18 15.77 -3.97 -0.06 -25.25 16 16 N -0.62 -15.94 2.98 -837.79 -2.50 -18.44 16 17 C 0.13 2.95 6.18 86.20 0.53 3.49 16 18 C -0.11 -1.95 5.09 30.51 0.16 -1.79 16 19 C 0.13 2.02 0.68 -10.75 -0.01 2.01 16 20 C -0.16 -2.49 4.20 30.66 0.13 -2.36 16 21 C 0.11 2.28 6.16 86.36 0.53 2.81 16 22 C -0.13 -1.93 4.56 30.68 0.14 -1.79 16 23 C 0.10 1.19 3.25 30.71 0.10 1.29 16 24 H 0.07 0.70 6.60 -2.39 -0.02 0.68 16 25 O -0.58 -7.76 13.33 -148.98 -1.99 -9.75 16 26 C -0.18 -1.68 5.76 30.68 0.18 -1.51 16 27 C 0.05 0.56 6.51 72.01 0.47 1.03 16 28 O -0.38 -5.99 8.99 -148.98 -1.34 -7.33 16 29 H 0.28 13.96 8.31 -92.71 -0.77 13.18 16 30 H 0.40 19.37 7.90 -92.71 -0.73 18.64 16 31 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 32 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 33 H 0.41 13.73 4.93 -92.70 -0.46 13.28 16 34 H 0.08 2.02 7.00 -2.39 -0.02 2.00 16 35 H 0.08 1.64 7.82 -2.38 -0.02 1.62 16 36 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.10 1.18 4.99 -2.39 -0.01 1.17 16 39 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 1.53 7.82 -2.39 -0.02 1.51 16 41 H 0.08 1.68 5.64 -2.38 -0.01 1.67 16 42 H 0.08 1.16 8.14 -2.38 -0.02 1.15 16 43 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 44 H 0.40 1.84 9.08 -74.06 -0.67 1.17 16 45 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.11 0.93 8.14 -2.39 -0.02 0.92 16 48 H 0.06 0.60 6.38 -2.39 -0.02 0.58 16 Total: -1.00 -70.45 375.88 -2.49 -72.95 By element: Atomic # 1 Polarization: 45.79 SS G_CDS: -0.84 Total: 44.95 kcal Atomic # 6 Polarization: 31.11 SS G_CDS: 6.21 Total: 37.32 kcal Atomic # 7 Polarization: -117.94 SS G_CDS: -6.46 Total: -124.40 kcal Atomic # 8 Polarization: -70.93 SS G_CDS: -3.43 Total: -74.37 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.55 kcal Total: -70.45 -2.49 -72.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672533098.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.224 kcal (2) G-P(sol) polarization free energy of solvation -70.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds