Wall clock time and date at job start Sat Apr 11 2020 06:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99541 * 2 1 4 4 H 1.48497 * 109.47365 * 269.99788 * 3 2 1 5 5 H 1.48506 * 109.47459 * 29.99775 * 3 2 1 6 6 H 1.48499 * 109.47309 * 149.99865 * 3 2 1 7 7 C 1.38810 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99902 * 191.02051 * 7 2 1 9 9 N 1.36930 * 119.99811 * 11.02743 * 7 2 1 10 10 C 1.46929 * 120.63530 * 31.68471 * 9 7 2 11 11 C 1.53191 * 108.77479 * 126.41405 * 10 9 7 12 12 C 1.53042 * 109.31298 * 54.63991 * 11 10 9 13 13 C 1.52996 * 109.45893 * 178.62801 * 12 11 10 14 14 O 1.42904 * 109.46958 * 180.75551 * 13 12 11 15 15 N 1.46493 * 109.46285 * 58.65119 * 12 11 10 16 16 C 1.34777 * 119.99845 * 62.67540 * 15 12 11 17 17 O 1.21283 * 120.00311 * 354.88099 * 16 15 12 18 18 C 1.50703 * 120.00238 * 174.88613 * 16 15 12 19 19 H 1.09003 * 109.86472 * 304.55436 * 18 16 15 20 20 C 1.54096 * 109.87959 * 65.71022 * 18 16 15 21 21 C 1.54811 * 104.19048 * 121.45540 * 20 18 16 22 22 C 1.54995 * 102.08860 * 20.88168 * 21 20 18 23 23 H 1.09008 * 110.62335 * 81.47645 * 22 21 20 24 24 C 1.50695 * 110.61957 * 204.47542 * 22 21 20 25 25 N 1.34780 * 120.00012 * 290.52277 * 24 22 21 26 26 O 1.21279 * 120.00345 * 110.52480 * 24 22 21 27 27 O 1.43738 * 109.87939 * 183.54364 * 18 16 15 28 28 C 1.53042 * 109.52326 * 298.63805 * 12 11 10 29 29 C 1.46926 * 120.62862 * 211.70861 * 9 7 2 30 30 H 0.97001 * 120.00646 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.58262 * 6.63118 * 10 9 7 32 32 H 1.08996 * 109.58575 * 246.20540 * 10 9 7 33 33 H 1.09001 * 109.49997 * 294.68687 * 11 10 9 34 34 H 1.09003 * 109.49529 * 174.58996 * 11 10 9 35 35 H 1.09000 * 109.47312 * 300.74966 * 13 12 11 36 36 H 1.09002 * 109.47666 * 60.75600 * 13 12 11 37 37 H 0.96702 * 113.99903 * 180.02562 * 14 13 12 38 38 H 0.96997 * 120.00527 * 242.67216 * 15 12 11 39 39 H 1.09001 * 110.48890 * 240.13279 * 20 18 16 40 40 H 1.08999 * 110.49015 * 2.64956 * 20 18 16 41 41 H 1.08998 * 110.90937 * 139.07679 * 21 20 18 42 42 H 1.08993 * 110.91234 * 262.65266 * 21 20 18 43 43 H 0.96995 * 119.99930 * 0.02562 * 25 24 22 44 44 H 0.97001 * 119.99916 * 179.97438 * 25 24 22 45 45 H 1.09004 * 109.49314 * 181.31197 * 28 12 11 46 46 H 1.08996 * 109.50293 * 301.40546 * 28 12 11 47 47 H 1.09001 * 109.58746 * 353.37354 * 29 9 7 48 48 H 1.09007 * 109.58875 * 113.79624 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4474 2.6528 0.7000 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0753 -1.2106 0.1793 9 7 1.3446 -2.3771 -0.2258 10 6 0.1676 -2.4136 -1.1044 11 6 0.3852 -3.4866 -2.1759 12 6 0.7052 -4.8210 -1.4983 13 6 0.8895 -5.9027 -2.5644 14 8 1.1710 -7.1525 -1.9311 15 7 -0.3982 -5.1942 -0.6098 16 6 -1.6246 -5.4249 -1.1188 17 8 -1.8379 -5.2338 -2.2974 18 6 -2.7311 -5.9202 -0.2236 19 1 -2.4184 -6.8347 0.2804 20 6 -3.0866 -4.8403 0.8166 21 6 -4.5891 -4.5583 0.5726 22 6 -5.0448 -5.8429 -0.1653 23 1 -5.2414 -6.6451 0.5461 24 6 -6.2643 -5.5673 -1.0066 25 7 -7.4478 -5.3118 -0.4146 26 8 -6.1808 -5.5755 -2.2165 27 8 -3.9139 -6.1704 -1.0010 28 6 1.9928 -4.6845 -0.6824 29 6 1.7936 -3.6254 0.4059 30 1 -0.4851 0.8400 -0.0004 31 1 0.0375 -1.4421 -1.5813 32 1 -0.7185 -2.6569 -0.5183 33 1 1.2167 -3.1961 -2.8181 34 1 -0.5191 -3.5906 -2.7755 35 1 -0.0232 -5.9915 -3.1536 36 1 1.7189 -5.6316 -3.2177 37 1 1.3002 -7.8858 -2.5482 38 1 -0.2461 -5.2754 0.3447 39 1 -2.9283 -5.2171 1.8271 40 1 -2.4954 -3.9400 0.6492 41 1 -5.1215 -4.4425 1.5167 42 1 -4.7226 -3.6791 -0.0575 43 1 -7.5145 -5.3050 0.5531 44 1 -8.2326 -5.1341 -0.9561 45 1 2.2329 -5.6414 -0.2189 46 1 2.8091 -4.3828 -1.3387 47 1 2.7362 -3.4535 0.9256 48 1 1.0400 -3.9676 1.1153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674324269.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:11 Heat of formation + Delta-G solvation = -137.616097 kcal Electronic energy + Delta-G solvation = -32233.146790 eV Core-core repulsion = 27902.958044 eV Total energy + Delta-G solvation = -4330.188746 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.72363 -39.80613 -38.45003 -36.99241 -36.07271 -34.04506 -33.95133 -32.49991 -31.76417 -30.79523 -29.86347 -29.33808 -26.69556 -24.87481 -23.85894 -22.35675 -22.22750 -21.13799 -20.72382 -20.19879 -18.63086 -18.07196 -17.57872 -17.14469 -16.76465 -16.56308 -16.37085 -15.53338 -14.96204 -14.83744 -14.73330 -14.65071 -14.38567 -13.92235 -13.81394 -13.64101 -13.42345 -13.27614 -13.05695 -12.66687 -12.43219 -12.22228 -11.91170 -11.82236 -11.64901 -11.39925 -11.23132 -11.06467 -10.87308 -10.75316 -10.41326 -10.31642 -10.26273 -10.03771 -9.92389 -9.89340 -9.81870 -9.60729 -9.54027 -8.86514 -8.50714 -8.47495 -6.61533 -5.78649 -3.27127 2.41820 2.77348 2.99805 3.36835 3.41740 3.43808 3.44309 4.01712 4.28427 4.47821 4.49363 4.56770 4.64405 4.78405 4.84945 4.97309 5.21196 5.30973 5.37334 5.40532 5.48691 5.54375 5.55492 5.69983 5.77237 5.79590 5.95178 5.98475 6.12446 6.27149 6.37127 6.43402 6.53482 6.60438 6.68001 6.69603 6.82339 6.91953 7.07366 7.10341 7.40647 7.71763 7.79186 7.80969 7.96121 8.07202 8.47577 8.65201 9.22207 9.83542 10.41952 11.28945 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011178 B = 0.003793 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.279944 B = 7380.929834 C = 9080.470439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.006 3.994 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.063 0.937 9 N -0.591 5.591 10 C 0.183 3.817 11 C -0.154 4.154 12 C 0.197 3.803 13 C 0.060 3.940 14 O -0.569 6.569 15 N -0.699 5.699 16 C 0.518 3.482 17 O -0.519 6.519 18 C 0.059 3.941 19 H 0.095 0.905 20 C -0.148 4.148 21 C -0.139 4.139 22 C 0.055 3.945 23 H 0.098 0.902 24 C 0.522 3.478 25 N -0.854 5.854 26 O -0.513 6.513 27 O -0.317 6.317 28 C -0.133 4.133 29 C 0.146 3.854 30 H 0.253 0.747 31 H 0.085 0.915 32 H 0.017 0.983 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.047 0.953 37 H 0.370 0.630 38 H 0.398 0.602 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.401 0.599 44 H 0.405 0.595 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.056 0.944 48 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.030 -14.280 4.763 17.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.193 4.193 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.081 0.919 9 N -0.314 5.314 10 C 0.058 3.942 11 C -0.194 4.194 12 C 0.111 3.889 13 C -0.018 4.018 14 O -0.373 6.373 15 N -0.352 5.352 16 C 0.302 3.698 17 O -0.394 6.394 18 C -0.003 4.003 19 H 0.113 0.887 20 C -0.186 4.186 21 C -0.177 4.177 22 C -0.007 4.007 23 H 0.115 0.885 24 C 0.305 3.695 25 N -0.421 5.421 26 O -0.386 6.386 27 O -0.234 6.234 28 C -0.173 4.173 29 C 0.019 3.981 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.035 0.965 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.216 0.784 38 H 0.233 0.767 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.106 0.894 43 H 0.229 0.771 44 H 0.236 0.764 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.074 0.926 48 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -9.071 -13.749 3.434 16.826 hybrid contribution 0.186 0.641 0.440 0.799 sum -8.885 -13.108 3.873 16.303 Atomic orbital electron populations 1.69974 1.05249 1.25441 1.54064 1.25150 0.95362 0.98344 1.00400 0.86283 0.79028 0.83655 0.77707 1.21432 1.21742 1.20445 1.19167 0.90889 0.84005 1.44337 0.91888 1.44043 1.32788 1.03373 1.51217 1.20643 0.88047 0.96481 0.89063 1.22624 1.01883 0.94510 1.00420 1.20279 0.86326 0.92804 0.89459 1.22775 0.99896 0.83839 0.95301 1.86450 1.94350 1.18800 1.37746 1.45777 1.08365 1.70035 1.11008 1.20102 0.83031 0.77959 0.88681 1.90662 1.81739 1.50470 1.16555 1.22721 0.87134 0.98886 0.91544 0.88707 1.22975 0.96541 1.00103 0.98955 1.23089 0.95936 0.97516 1.01187 1.23027 0.87602 0.98122 0.91941 0.88471 1.20184 0.84310 0.76362 0.88609 1.43714 1.11049 1.75808 1.11483 1.90820 1.84791 1.48732 1.14268 1.89131 1.11755 1.86479 1.36018 1.22239 0.95479 0.99883 0.99655 1.20892 0.97659 0.87174 0.92365 0.93650 0.89633 0.96471 0.92087 0.90829 0.91657 0.93498 0.78423 0.76741 0.89200 0.88398 0.89006 0.89399 0.77110 0.76395 0.91680 0.91034 0.92562 0.96844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.81 11.10 55.49 0.62 -25.19 16 2 C 0.01 0.17 5.04 -17.43 -0.09 0.08 16 3 Si 0.90 21.51 29.57 -169.99 -5.03 16.49 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.25 -6.82 9.58 -15.06 -0.14 -6.96 16 8 H 0.06 1.66 7.85 -52.49 -0.41 1.25 16 9 N -0.59 -14.30 2.98 -172.34 -0.51 -14.81 16 10 C 0.18 4.39 4.99 -3.71 -0.02 4.37 16 11 C -0.15 -3.18 4.71 -26.61 -0.13 -3.30 16 12 C 0.20 3.44 0.44 -131.78 -0.06 3.38 16 13 C 0.06 0.96 5.68 37.16 0.21 1.17 16 14 O -0.57 -8.01 12.84 -35.23 -0.45 -8.47 16 15 N -0.70 -11.32 3.96 -47.57 -0.19 -11.51 16 16 C 0.52 8.98 6.35 -10.98 -0.07 8.91 16 17 O -0.52 -11.09 12.78 -14.01 -0.18 -11.27 16 18 C 0.06 0.80 3.85 -27.31 -0.11 0.69 16 19 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 20 C -0.15 -1.67 6.62 -25.20 -0.17 -1.83 16 21 C -0.14 -1.40 6.57 -24.72 -0.16 -1.56 16 22 C 0.05 0.61 3.76 -26.83 -0.10 0.51 16 23 H 0.10 0.72 8.14 -51.92 -0.42 0.29 16 24 C 0.52 6.50 7.47 -10.99 -0.08 6.41 16 25 N -0.85 -5.90 8.87 31.22 0.28 -5.62 16 26 O -0.51 -9.41 17.41 -13.48 -0.23 -9.65 16 27 O -0.32 -5.08 10.02 -64.29 -0.64 -5.72 16 28 C -0.13 -2.27 4.84 -26.63 -0.13 -2.40 16 29 C 0.15 2.87 6.24 -3.73 -0.02 2.85 16 30 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.09 2.36 6.14 -51.93 -0.32 2.04 16 32 H 0.02 0.43 7.74 -51.93 -0.40 0.03 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.60 6.23 -51.93 -0.32 1.28 16 35 H 0.07 1.16 6.17 -51.93 -0.32 0.84 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.37 3.61 9.12 45.56 0.42 4.02 16 38 H 0.40 5.74 7.19 -40.82 -0.29 5.45 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.10 1.39 7.69 -51.93 -0.40 0.99 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 1.09 8.05 -51.93 -0.42 0.67 16 43 H 0.40 1.31 8.83 -40.82 -0.36 0.95 16 44 H 0.40 2.44 8.93 -40.82 -0.36 2.07 16 45 H 0.06 1.01 7.66 -51.93 -0.40 0.61 16 46 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.06 1.10 7.93 -51.93 -0.41 0.68 16 48 H 0.01 0.26 6.89 -51.93 -0.36 -0.10 16 LS Contribution 378.72 15.07 5.71 5.71 Total: -1.00 -37.92 378.72 -8.16 -46.08 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -6.46 Total: 11.64 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: -1.06 Total: 12.33 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: 0.19 Total: -57.13 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -1.51 Total: -35.11 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.92 -8.16 -46.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674324269.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.536 kcal (2) G-P(sol) polarization free energy of solvation -37.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds