Wall clock time and date at job start Sat Apr 11 2020 06:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99541 * 2 1 4 4 H 1.48497 * 109.47365 * 269.99788 * 3 2 1 5 5 H 1.48506 * 109.47459 * 29.99775 * 3 2 1 6 6 H 1.48499 * 109.47309 * 149.99865 * 3 2 1 7 7 C 1.38810 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99902 * 191.02051 * 7 2 1 9 9 N 1.36930 * 119.99811 * 11.02743 * 7 2 1 10 10 C 1.46929 * 120.63530 * 31.68471 * 9 7 2 11 11 C 1.53191 * 108.77479 * 126.41405 * 10 9 7 12 12 C 1.53042 * 109.31298 * 54.63991 * 11 10 9 13 13 C 1.52996 * 109.45893 * 178.62801 * 12 11 10 14 14 O 1.42904 * 109.46958 * 180.75551 * 13 12 11 15 15 N 1.46493 * 109.46285 * 58.65119 * 12 11 10 16 16 C 1.34777 * 119.99845 * 62.67540 * 15 12 11 17 17 O 1.21283 * 120.00311 * 354.88099 * 16 15 12 18 18 C 1.50703 * 120.00238 * 174.88613 * 16 15 12 19 19 H 1.09003 * 109.86472 * 304.55436 * 18 16 15 20 20 C 1.54096 * 109.87959 * 65.71022 * 18 16 15 21 21 C 1.54811 * 104.19048 * 121.45540 * 20 18 16 22 22 C 1.54995 * 102.08860 * 20.88168 * 21 20 18 23 23 H 1.09008 * 110.62335 * 81.47645 * 22 21 20 24 24 C 1.50695 * 110.61957 * 204.47542 * 22 21 20 25 25 N 1.34780 * 120.00012 * 290.52277 * 24 22 21 26 26 O 1.21279 * 120.00345 * 110.52480 * 24 22 21 27 27 O 1.43738 * 109.87939 * 183.54364 * 18 16 15 28 28 C 1.53042 * 109.52326 * 298.63805 * 12 11 10 29 29 C 1.46926 * 120.62862 * 211.70861 * 9 7 2 30 30 H 0.97001 * 120.00646 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.58262 * 6.63118 * 10 9 7 32 32 H 1.08996 * 109.58575 * 246.20540 * 10 9 7 33 33 H 1.09001 * 109.49997 * 294.68687 * 11 10 9 34 34 H 1.09003 * 109.49529 * 174.58996 * 11 10 9 35 35 H 1.09000 * 109.47312 * 300.74966 * 13 12 11 36 36 H 1.09002 * 109.47666 * 60.75600 * 13 12 11 37 37 H 0.96702 * 113.99903 * 180.02562 * 14 13 12 38 38 H 0.96997 * 120.00527 * 242.67216 * 15 12 11 39 39 H 1.09001 * 110.48890 * 240.13279 * 20 18 16 40 40 H 1.08999 * 110.49015 * 2.64956 * 20 18 16 41 41 H 1.08998 * 110.90937 * 139.07679 * 21 20 18 42 42 H 1.08993 * 110.91234 * 262.65266 * 21 20 18 43 43 H 0.96995 * 119.99930 * 0.02562 * 25 24 22 44 44 H 0.97001 * 119.99916 * 179.97438 * 25 24 22 45 45 H 1.09004 * 109.49314 * 181.31197 * 28 12 11 46 46 H 1.08996 * 109.50293 * 301.40546 * 28 12 11 47 47 H 1.09001 * 109.58746 * 353.37354 * 29 9 7 48 48 H 1.09007 * 109.58875 * 113.79624 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4474 2.6528 0.7000 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0753 -1.2106 0.1793 9 7 1.3446 -2.3771 -0.2258 10 6 0.1676 -2.4136 -1.1044 11 6 0.3852 -3.4866 -2.1759 12 6 0.7052 -4.8210 -1.4983 13 6 0.8895 -5.9027 -2.5644 14 8 1.1710 -7.1525 -1.9311 15 7 -0.3982 -5.1942 -0.6098 16 6 -1.6246 -5.4249 -1.1188 17 8 -1.8379 -5.2338 -2.2974 18 6 -2.7311 -5.9202 -0.2236 19 1 -2.4184 -6.8347 0.2804 20 6 -3.0866 -4.8403 0.8166 21 6 -4.5891 -4.5583 0.5726 22 6 -5.0448 -5.8429 -0.1653 23 1 -5.2414 -6.6451 0.5461 24 6 -6.2643 -5.5673 -1.0066 25 7 -7.4478 -5.3118 -0.4146 26 8 -6.1808 -5.5755 -2.2165 27 8 -3.9139 -6.1704 -1.0010 28 6 1.9928 -4.6845 -0.6824 29 6 1.7936 -3.6254 0.4059 30 1 -0.4851 0.8400 -0.0004 31 1 0.0375 -1.4421 -1.5813 32 1 -0.7185 -2.6569 -0.5183 33 1 1.2167 -3.1961 -2.8181 34 1 -0.5191 -3.5906 -2.7755 35 1 -0.0232 -5.9915 -3.1536 36 1 1.7189 -5.6316 -3.2177 37 1 1.3002 -7.8858 -2.5482 38 1 -0.2461 -5.2754 0.3447 39 1 -2.9283 -5.2171 1.8271 40 1 -2.4954 -3.9400 0.6492 41 1 -5.1215 -4.4425 1.5167 42 1 -4.7226 -3.6791 -0.0575 43 1 -7.5145 -5.3050 0.5531 44 1 -8.2326 -5.1341 -0.9561 45 1 2.2329 -5.6414 -0.2189 46 1 2.8091 -4.3828 -1.3387 47 1 2.7362 -3.4535 0.9256 48 1 1.0400 -3.9676 1.1153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674324269.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:09 Heat of formation + Delta-G solvation = -170.751354 kcal Electronic energy + Delta-G solvation = -32234.583643 eV Core-core repulsion = 27902.958044 eV Total energy + Delta-G solvation = -4331.625598 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -41.89432 -40.99738 -39.59965 -38.41091 -37.41770 -35.63075 -34.86627 -33.89803 -33.05647 -32.29230 -31.52342 -30.50854 -28.36030 -25.90463 -25.62570 -23.95146 -23.28819 -22.66141 -21.60235 -21.58637 -20.16984 -19.12009 -18.78765 -18.42593 -18.05398 -17.60066 -17.47487 -16.87705 -16.72678 -16.13222 -15.90716 -15.86499 -15.63807 -15.46308 -15.14902 -15.00203 -14.85377 -14.57397 -14.44798 -14.27060 -13.93630 -13.36578 -13.22262 -13.18299 -12.99516 -12.79686 -12.64032 -12.58209 -12.47541 -12.21238 -12.04664 -11.97260 -11.84594 -11.46305 -11.42458 -11.20132 -11.01090 -10.82357 -10.72050 -10.54476 -10.20959 -9.93387 -8.60249 -7.85053 -5.36092 1.46330 1.48464 1.48672 1.56326 1.67614 1.83559 2.37692 2.51250 3.07734 3.25601 3.32550 3.39477 3.67289 3.72552 3.77636 3.84569 3.96568 4.00771 4.03652 4.14109 4.26854 4.36120 4.48028 4.51032 4.58658 4.64020 4.72722 4.74562 4.81604 4.92844 4.98103 5.02990 5.04652 5.17797 5.19005 5.33520 5.47113 5.57803 5.64907 5.67105 5.75842 5.87443 6.42222 6.42863 6.67885 6.87024 7.16947 7.30460 7.35666 7.86926 8.40354 9.20201 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011178 B = 0.003793 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.279944 B = 7380.929834 C = 9080.470439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.047 4.047 3 Si 0.964 3.036 4 H -0.291 1.291 5 H -0.295 1.295 6 H -0.265 1.265 7 C -0.261 4.261 8 H 0.068 0.932 9 N -0.606 5.606 10 C 0.200 3.800 11 C -0.142 4.142 12 C 0.196 3.804 13 C 0.074 3.926 14 O -0.570 6.570 15 N -0.691 5.691 16 C 0.508 3.492 17 O -0.569 6.569 18 C 0.061 3.939 19 H 0.134 0.866 20 C -0.142 4.142 21 C -0.134 4.134 22 C 0.053 3.947 23 H 0.149 0.851 24 C 0.515 3.485 25 N -0.824 5.824 26 O -0.588 6.588 27 O -0.363 6.363 28 C -0.117 4.117 29 C 0.142 3.858 30 H 0.247 0.753 31 H 0.041 0.959 32 H -0.001 1.001 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.042 0.958 36 H 0.059 0.941 37 H 0.392 0.608 38 H 0.409 0.591 39 H 0.136 0.864 40 H 0.060 0.940 41 H 0.142 0.858 42 H 0.051 0.949 43 H 0.423 0.577 44 H 0.411 0.589 45 H 0.093 0.907 46 H 0.069 0.931 47 H 0.061 0.939 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.554 -16.280 7.573 19.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.242 4.242 3 Si 0.793 3.207 4 H -0.218 1.218 5 H -0.222 1.222 6 H -0.189 1.189 7 C -0.392 4.392 8 H 0.086 0.914 9 N -0.329 5.329 10 C 0.074 3.926 11 C -0.182 4.182 12 C 0.110 3.890 13 C -0.005 4.005 14 O -0.377 6.377 15 N -0.344 5.344 16 C 0.294 3.706 17 O -0.448 6.448 18 C 0.000 4.000 19 H 0.151 0.849 20 C -0.180 4.180 21 C -0.172 4.172 22 C -0.008 4.008 23 H 0.166 0.834 24 C 0.300 3.700 25 N -0.390 5.390 26 O -0.467 6.467 27 O -0.281 6.281 28 C -0.156 4.156 29 C 0.017 3.983 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.017 0.983 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.241 0.759 38 H 0.245 0.755 39 H 0.154 0.846 40 H 0.078 0.922 41 H 0.160 0.840 42 H 0.070 0.930 43 H 0.255 0.745 44 H 0.243 0.757 45 H 0.111 0.889 46 H 0.087 0.913 47 H 0.080 0.920 48 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -8.599 -15.788 6.339 19.063 hybrid contribution -0.007 1.230 -0.407 1.296 sum -8.606 -14.558 5.932 17.922 Atomic orbital electron populations 1.70142 1.06657 1.25576 1.55632 1.25866 0.96047 1.01409 1.00891 0.85313 0.78290 0.79803 0.77292 1.21810 1.22195 1.18924 1.19511 0.91328 0.85165 1.43157 0.91421 1.44218 1.32441 1.04373 1.51905 1.20240 0.87773 0.95216 0.89373 1.22385 1.00831 0.95786 0.99233 1.20156 0.87082 0.91626 0.90139 1.22424 0.99369 0.84372 0.94328 1.86374 1.94169 1.18698 1.38466 1.45693 1.07985 1.69328 1.11347 1.20971 0.83968 0.76969 0.88671 1.90642 1.82574 1.52626 1.18963 1.22884 0.85385 1.00937 0.90752 0.84902 1.23009 0.96523 0.97958 1.00527 1.23129 0.95806 0.95619 1.02633 1.23407 0.85625 1.00011 0.91731 0.83406 1.20662 0.85970 0.75517 0.87896 1.43482 1.09620 1.73109 1.12817 1.90790 1.86048 1.52502 1.17333 1.89094 1.13569 1.86824 1.38578 1.22083 0.94820 1.00091 0.98585 1.21077 0.98038 0.85859 0.93306 0.94352 0.94025 0.98290 0.92408 0.92774 0.93955 0.92256 0.75906 0.75479 0.84573 0.92154 0.84001 0.92991 0.74480 0.75663 0.88871 0.91259 0.92013 0.95494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.28 11.10 21.65 0.24 -55.04 16 2 C -0.05 -2.58 5.04 84.86 0.43 -2.16 16 3 Si 0.96 44.79 29.57 68.60 2.03 46.82 16 4 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.26 -14.08 9.58 84.03 0.80 -13.28 16 8 H 0.07 3.53 7.85 -2.91 -0.02 3.50 16 9 N -0.61 -29.52 2.98 -699.16 -2.09 -31.60 16 10 C 0.20 10.01 4.99 86.36 0.43 10.44 16 11 C -0.14 -6.08 4.71 30.67 0.14 -5.94 16 12 C 0.20 6.74 0.44 3.63 0.00 6.75 16 13 C 0.07 2.28 5.68 71.98 0.41 2.69 16 14 O -0.57 -14.51 12.84 -148.98 -1.91 -16.42 16 15 N -0.69 -21.86 3.96 -422.81 -1.67 -23.53 16 16 C 0.51 17.77 6.35 87.66 0.56 18.33 16 17 O -0.57 -25.58 12.78 15.67 0.20 -25.38 16 18 C 0.06 1.58 3.85 30.22 0.12 1.70 16 19 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 20 C -0.14 -2.92 6.62 31.58 0.21 -2.71 16 21 C -0.13 -2.42 6.57 31.90 0.21 -2.21 16 22 C 0.05 1.06 3.76 30.53 0.11 1.18 16 23 H 0.15 1.48 8.14 -2.38 -0.02 1.46 16 24 C 0.52 12.59 7.47 87.65 0.65 13.24 16 25 N -0.82 -9.82 8.87 -173.53 -1.54 -11.36 16 26 O -0.59 -22.64 17.41 15.18 0.26 -22.38 16 27 O -0.36 -11.51 10.02 -121.19 -1.21 -12.73 16 28 C -0.12 -3.72 4.84 30.66 0.15 -3.57 16 29 C 0.14 5.39 6.24 86.35 0.54 5.93 16 30 H 0.25 14.32 8.31 -92.71 -0.77 13.54 16 31 H 0.04 2.43 6.14 -2.39 -0.01 2.42 16 32 H 0.00 -0.05 7.74 -2.39 -0.02 -0.07 16 33 H 0.06 2.45 8.14 -2.39 -0.02 2.44 16 34 H 0.05 2.52 6.23 -2.39 -0.01 2.51 16 35 H 0.04 1.53 6.17 -2.39 -0.01 1.52 16 36 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.39 6.51 9.12 -74.06 -0.68 5.84 16 38 H 0.41 10.98 7.19 -92.71 -0.67 10.31 16 39 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.06 1.72 7.69 -2.39 -0.02 1.71 16 41 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.05 1.31 8.05 -2.39 -0.02 1.29 16 43 H 0.42 1.29 8.83 -92.71 -0.82 0.48 16 44 H 0.41 4.40 8.93 -92.71 -0.83 3.57 16 45 H 0.09 2.53 7.66 -2.38 -0.02 2.51 16 46 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.06 2.27 7.93 -2.39 -0.02 2.25 16 48 H 0.03 0.96 6.89 -2.38 -0.02 0.95 16 Total: -1.00 -90.07 378.72 -2.88 -92.95 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: -1.95 Total: 28.28 kcal Atomic # 6 Polarization: 25.63 SS G_CDS: 4.77 Total: 30.39 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -5.06 Total: -121.53 kcal Atomic # 8 Polarization: -74.24 SS G_CDS: -2.66 Total: -76.91 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -90.07 -2.88 -92.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674324269.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.803 kcal (2) G-P(sol) polarization free energy of solvation -90.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds