Wall clock time and date at job start Sat Apr 11 2020 06:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47122 * 2 1 4 4 N 1.46500 * 109.46994 * 120.00010 * 2 1 3 5 5 C 1.46498 * 120.00292 * 122.26031 * 4 2 1 6 6 C 1.53003 * 109.47000 * 269.99987 * 5 4 2 7 7 N 1.46499 * 109.46567 * 179.97438 * 6 5 4 8 8 C 1.46498 * 120.00444 * 269.99823 * 7 6 5 9 9 C 1.36937 * 120.00057 * 90.00351 * 7 6 5 10 10 H 1.08006 * 119.99841 * 6.46614 * 9 7 6 11 11 C 1.38807 * 120.00493 * 186.46412 * 9 7 6 12 12 N 1.31626 * 119.99899 * 32.82759 * 11 9 7 13 13 Si 1.86804 * 120.00244 * 212.82936 * 11 9 7 14 14 H 1.48503 * 109.47094 * 95.00078 * 13 11 9 15 15 H 1.48502 * 109.47055 * 214.99599 * 13 11 9 16 16 H 1.48492 * 109.47069 * 334.99960 * 13 11 9 17 17 C 1.34778 * 119.99637 * 302.26475 * 4 2 1 18 18 O 1.21562 * 119.99609 * 211.70151 * 17 4 2 19 19 C 1.47836 * 120.00677 * 31.70183 * 17 4 2 20 20 C 1.40020 * 120.56158 * 137.24056 * 19 17 4 21 21 C 1.38363 * 118.28787 * 179.70783 * 20 19 17 22 22 C 1.38350 * 119.30385 * 0.27260 * 21 20 19 23 23 C 1.50699 * 119.46489 * 180.02562 * 22 21 20 24 24 F 1.39894 * 109.47420 * 210.00414 * 23 22 21 25 25 F 1.39906 * 109.46659 * 330.00039 * 23 22 21 26 26 N 1.31932 * 121.08173 * 359.97438 * 22 21 20 27 27 C 1.31699 * 121.87418 * 0.02562 * 26 22 21 28 28 H 1.08993 * 109.47025 * 253.26364 * 1 2 3 29 29 H 1.09004 * 109.46568 * 13.25848 * 1 2 3 30 30 H 1.08997 * 109.47366 * 133.25434 * 1 2 3 31 31 H 1.08998 * 109.46546 * 239.99749 * 2 1 3 32 32 H 1.09004 * 109.46590 * 222.88046 * 3 2 1 33 33 H 1.09000 * 109.47552 * 342.87952 * 3 2 1 34 34 H 1.09000 * 109.46922 * 102.88571 * 3 2 1 35 35 H 1.08994 * 109.47034 * 29.99840 * 5 4 2 36 36 H 1.09001 * 109.47016 * 149.99820 * 5 4 2 37 37 H 1.08994 * 109.47107 * 299.99808 * 6 5 4 38 38 H 1.09003 * 109.46775 * 60.00511 * 6 5 4 39 39 H 1.09000 * 109.47340 * 95.26052 * 8 7 6 40 40 H 1.08999 * 109.47641 * 215.26522 * 8 7 6 41 41 H 1.09001 * 109.47309 * 335.26849 * 8 7 6 42 42 H 0.96994 * 119.99977 * 179.97438 * 12 11 9 43 43 H 1.07997 * 120.85528 * 359.97438 * 20 19 17 44 44 H 1.07994 * 120.34777 * 180.25032 * 21 20 19 45 45 H 1.08991 * 109.47286 * 89.99664 * 23 22 21 46 46 H 1.08007 * 119.71332 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.9010 -1.8522 1.0624 6 6 2.0581 -3.1267 0.9830 7 7 2.9408 -4.2881 0.8486 8 6 3.3348 -4.7589 -0.4816 9 6 3.3976 -4.9339 1.9664 10 1 3.0262 -4.6543 2.9413 11 6 4.3380 -5.9478 1.8467 12 7 5.2442 -5.8958 0.8934 13 14 4.3176 -7.3862 3.0384 14 1 3.5510 -8.5106 2.4441 15 1 5.7104 -7.8250 3.3086 16 1 3.6754 -6.9666 4.3098 17 6 1.6555 -0.2573 2.4197 18 8 2.4168 -0.3820 3.3591 19 6 0.3316 0.3695 2.6195 20 6 -0.4462 0.0492 3.7388 21 6 -1.6753 0.6684 3.8822 22 6 -2.0949 1.5711 2.9215 23 6 -3.4326 2.2481 3.0744 24 9 -3.9581 2.5335 1.8097 25 9 -4.3078 1.4010 3.7627 26 7 -1.3427 1.8499 1.8741 27 6 -0.1659 1.2869 1.6934 28 1 -0.3633 -0.2959 0.9841 29 1 -0.3632 1.0003 -0.2357 30 1 -0.3634 -0.7042 -0.7484 31 1 1.8933 -0.5139 -0.8900 32 1 2.8712 1.5339 -0.6993 33 1 1.2352 2.1125 -0.3025 34 1 2.3772 1.7086 1.0018 35 1 3.4965 -1.7533 0.1550 36 1 3.5625 -1.9073 1.9270 37 1 1.4625 -3.2255 1.8905 38 1 1.3967 -3.0715 0.1183 39 1 4.2992 -4.3271 -0.7489 40 1 3.4130 -5.8460 -0.4739 41 1 2.5852 -4.4537 -1.2117 42 1 5.9015 -6.6041 0.8100 43 1 -0.0940 -0.6596 4.4736 44 1 -2.3006 0.4490 4.7350 45 1 -3.3088 3.1751 3.6341 46 1 0.4212 1.5411 0.8232 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677200767.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:30 Heat of formation + Delta-G solvation = -3.432015 kcal Electronic energy + Delta-G solvation = -30665.906446 eV Core-core repulsion = 26230.448843 eV Total energy + Delta-G solvation = -4435.457603 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.166 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -49.99692 -48.01547 -42.86144 -40.37178 -38.34689 -37.63711 -34.88008 -33.88708 -33.28826 -32.37097 -29.87543 -28.60441 -28.02750 -27.81982 -25.47438 -25.13540 -23.89955 -23.25152 -22.33561 -20.36478 -19.11643 -18.82713 -18.58083 -18.47264 -17.99957 -17.66910 -16.97778 -16.88554 -16.66916 -16.40115 -15.80198 -15.62096 -15.31694 -15.09526 -14.92400 -14.82943 -14.54529 -14.45869 -14.26786 -14.10832 -13.99777 -13.78690 -13.46983 -13.39724 -13.16036 -13.02020 -12.91660 -12.75149 -12.43571 -12.39515 -12.23251 -12.11478 -11.97287 -11.72514 -11.60217 -11.37303 -11.09105 -10.64531 -10.55040 -9.88021 -9.71454 -8.96115 -7.99314 -5.20624 -0.62417 0.07174 1.28453 1.42734 1.46176 1.54382 1.80245 2.30085 2.45655 2.49922 3.08111 3.13214 3.20717 3.28588 3.54189 3.65316 3.71824 3.75924 3.87065 3.94577 4.01598 4.08151 4.12924 4.20263 4.40144 4.46277 4.49974 4.53869 4.59392 4.75203 4.77744 4.79342 4.83328 4.85203 4.94615 5.08857 5.12978 5.25363 5.27959 5.30606 5.49894 5.60642 5.68150 6.19092 6.30465 6.52291 6.86726 7.06510 7.81685 8.20065 9.08266 Molecular weight = 341.17amu Principal moments of inertia in cm(-1) A = 0.016074 B = 0.002783 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.510683 B =10057.550293 C =10857.089866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.124 3.876 3 C -0.185 4.185 4 N -0.613 5.613 5 C 0.111 3.889 6 C 0.148 3.852 7 N -0.613 5.613 8 C 0.168 3.832 9 C -0.274 4.274 10 H 0.064 0.936 11 C -0.041 4.041 12 N -0.917 5.917 13 Si 0.947 3.053 14 H -0.284 1.284 15 H -0.295 1.295 16 H -0.275 1.275 17 C 0.572 3.428 18 O -0.562 6.562 19 C -0.204 4.204 20 C -0.030 4.030 21 C -0.154 4.154 22 C 0.064 3.936 23 C 0.328 3.672 24 F -0.199 7.199 25 F -0.198 7.198 26 N -0.488 5.488 27 C 0.142 3.858 28 H 0.069 0.931 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.117 0.883 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.042 0.958 37 H 0.029 0.971 38 H 0.071 0.929 39 H 0.002 0.998 40 H 0.022 0.978 41 H 0.045 0.955 42 H 0.252 0.748 43 H 0.144 0.856 44 H 0.173 0.827 45 H 0.174 0.826 46 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.227 20.491 -1.532 26.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.022 3.978 3 C -0.242 4.242 4 N -0.346 5.346 5 C -0.014 4.014 6 C 0.021 3.979 7 N -0.337 5.337 8 C 0.024 3.976 9 C -0.404 4.404 10 H 0.082 0.918 11 C -0.237 4.237 12 N -0.563 5.563 13 Si 0.775 3.225 14 H -0.211 1.211 15 H -0.222 1.222 16 H -0.200 1.200 17 C 0.361 3.639 18 O -0.441 6.441 19 C -0.209 4.209 20 C -0.056 4.056 21 C -0.174 4.174 22 C -0.073 4.073 23 C 0.274 3.726 24 F -0.180 7.180 25 F -0.180 7.180 26 N -0.197 5.197 27 C -0.015 4.015 28 H 0.087 0.913 29 H 0.124 0.876 30 H 0.096 0.904 31 H 0.135 0.865 32 H 0.107 0.893 33 H 0.124 0.876 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.061 0.939 37 H 0.047 0.953 38 H 0.089 0.911 39 H 0.020 0.980 40 H 0.041 0.959 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.162 0.838 44 H 0.190 0.810 45 H 0.190 0.810 46 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -17.048 20.888 -1.710 27.017 hybrid contribution 0.962 -2.007 1.373 2.615 sum -16.086 18.881 -0.337 24.807 Atomic orbital electron populations 1.23731 0.94701 1.04657 1.03195 1.21550 0.94386 0.94129 0.87746 1.22727 1.03852 0.94431 1.03149 1.47942 1.50240 1.31059 1.05393 1.22206 0.92970 0.84483 1.01711 1.21188 0.91962 0.85128 0.99646 1.44319 1.55315 1.31018 1.03013 1.20679 0.95625 0.97496 0.83832 1.19362 1.19642 1.13538 0.87822 0.91801 1.25318 0.95762 1.02414 1.00252 1.70383 1.15185 1.32798 1.37886 0.85557 0.76539 0.81176 0.79222 1.21115 1.22184 1.19980 1.18385 0.85756 0.76945 0.82792 1.90778 1.53470 1.56118 1.43695 1.21146 0.96513 1.03699 0.99548 1.21758 0.92908 0.96406 0.94480 1.21898 0.96749 0.97015 1.01750 1.22230 0.96938 0.95845 0.92306 1.20477 0.80477 0.93236 0.78447 1.93011 1.87631 1.94059 1.43287 1.93020 1.71120 1.74499 1.79334 1.67529 1.05719 1.25462 1.21039 1.25074 0.92158 0.88006 0.96289 0.91308 0.87634 0.90380 0.86513 0.89307 0.87582 0.93193 0.90135 0.93895 0.95280 0.91091 0.97955 0.95920 0.93671 0.93915 0.83803 0.80993 0.80982 0.76030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.42 7.73 71.98 0.56 -2.86 16 2 C 0.12 2.33 3.27 44.99 0.15 2.48 16 3 C -0.18 -2.66 8.35 71.98 0.60 -2.06 16 4 N -0.61 -17.62 2.40 -801.22 -1.92 -19.54 16 5 C 0.11 4.09 5.88 86.38 0.51 4.60 16 6 C 0.15 5.88 6.03 86.38 0.52 6.40 16 7 N -0.61 -30.44 2.93 -726.94 -2.13 -32.57 16 8 C 0.17 7.94 9.14 127.77 1.17 9.11 16 9 C -0.27 -15.49 9.64 84.03 0.81 -14.68 16 10 H 0.06 3.68 8.00 -2.91 -0.02 3.65 16 11 C -0.04 -2.32 4.71 84.86 0.40 -1.92 16 12 N -0.92 -54.11 11.13 21.65 0.24 -53.87 16 13 Si 0.95 45.77 29.66 68.60 2.03 47.80 16 14 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 15 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 16 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 17 C 0.57 18.35 5.91 86.78 0.51 18.87 16 18 O -0.56 -23.36 16.79 -3.91 -0.07 -23.42 16 19 C -0.20 -5.09 4.23 -19.99 -0.08 -5.18 16 20 C -0.03 -0.68 9.83 22.73 0.22 -0.45 16 21 C -0.15 -2.69 9.42 22.33 0.21 -2.48 16 22 C 0.06 1.11 6.58 42.57 0.28 1.39 16 23 C 0.33 4.23 5.72 71.24 0.41 4.64 16 24 F -0.20 -3.54 17.05 44.97 0.77 -2.77 16 25 F -0.20 -2.95 16.45 44.97 0.74 -2.22 16 26 N -0.49 -9.50 9.92 -195.60 -1.94 -11.44 16 27 C 0.14 2.81 5.89 85.02 0.50 3.31 16 28 H 0.07 1.47 3.96 -10.92 -0.04 1.43 16 29 H 0.11 1.36 5.37 -2.38 -0.01 1.35 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.12 1.93 7.81 -2.39 -0.02 1.91 16 32 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.11 0.93 6.22 -2.39 -0.01 0.91 16 34 H 0.05 0.94 6.83 -2.39 -0.02 0.92 16 35 H 0.08 2.79 7.94 -2.39 -0.02 2.77 16 36 H 0.04 1.97 7.35 -2.39 -0.02 1.95 16 37 H 0.03 1.23 8.03 -2.39 -0.02 1.21 16 38 H 0.07 2.38 7.86 -2.39 -0.02 2.36 16 39 H 0.00 0.11 7.78 -2.39 -0.02 0.09 16 40 H 0.02 1.16 6.79 -2.39 -0.02 1.15 16 41 H 0.04 1.72 7.83 -2.39 -0.02 1.70 16 42 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 43 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 44 H 0.17 2.08 7.59 -2.91 -0.02 2.06 16 45 H 0.17 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.22 3.54 1.13 -3.43 0.00 3.53 16 Total: -1.00 -73.99 371.25 5.47 -68.51 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 0.99 Total: 8.34 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: 6.76 Total: 21.17 kcal Atomic # 7 Polarization: -111.66 SS G_CDS: -5.75 Total: -117.41 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.07 Total: -23.42 kcal Atomic # 9 Polarization: -6.49 SS G_CDS: 1.51 Total: -4.98 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -73.99 5.47 -68.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677200767.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.082 kcal (2) G-P(sol) polarization free energy of solvation -73.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds