Wall clock time and date at job start Sat Apr 11 2020 06:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86807 * 119.99633 * 2 1 4 4 H 1.48501 * 109.46923 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47022 * 300.00069 * 3 2 1 6 6 H 1.48494 * 109.47180 * 60.00260 * 3 2 1 7 7 C 1.38946 * 120.00460 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99768 * 179.97438 * 7 2 1 9 9 N 1.37091 * 119.99845 * 359.97438 * 7 2 1 10 10 C 1.34783 * 119.99963 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00040 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00013 * 180.02562 * 10 9 7 13 13 N 1.46493 * 109.47362 * 179.97438 * 12 10 9 14 14 C 1.34771 * 120.00662 * 179.97438 * 13 12 10 15 15 O 1.21595 * 119.99602 * 354.92641 * 14 13 12 16 16 N 1.34772 * 120.00579 * 174.92316 * 14 13 12 17 17 C 1.47150 * 120.98061 * 4.97533 * 16 14 13 18 18 C 1.53298 * 108.38624 * 230.55773 * 17 16 14 19 19 O 1.42962 * 109.22298 * 307.69819 * 18 17 16 20 20 C 1.42959 * 114.16500 * 62.57846 * 19 18 17 21 21 C 1.47155 * 120.98431 * 184.99926 * 16 14 13 22 22 H 1.08994 * 109.71467 * 249.18179 * 21 16 14 23 23 C 1.53002 * 109.68219 * 9.71994 * 21 16 14 24 24 C 1.52993 * 109.47224 * 180.24446 * 23 21 16 25 25 H 1.08994 * 110.75557 * 53.54723 * 24 23 21 26 26 C 1.55306 * 110.84888 * 177.02426 * 24 23 21 27 27 C 1.55208 * 100.82897 * 152.17779 * 26 24 23 28 28 O 1.43648 * 105.25824 * 323.81059 * 27 26 24 29 29 C 1.43241 * 109.96799 * 24.29024 * 28 27 26 30 30 H 0.96995 * 120.00492 * 359.97438 * 1 2 3 31 31 H 0.96997 * 120.00200 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.47254 * 59.99300 * 12 10 9 33 33 H 1.09002 * 109.47044 * 300.00040 * 12 10 9 34 34 H 0.97012 * 119.99823 * 359.97438 * 13 12 10 35 35 H 1.08997 * 109.67943 * 110.83649 * 17 16 14 36 36 H 1.08997 * 109.71476 * 350.29917 * 17 16 14 37 37 H 1.09000 * 109.51354 * 187.77355 * 18 17 16 38 38 H 1.09002 * 109.51123 * 67.62282 * 18 17 16 39 39 H 1.09005 * 109.51288 * 177.49515 * 20 19 18 40 40 H 1.09000 * 109.55524 * 57.37310 * 20 19 18 41 41 H 1.08999 * 109.47081 * 300.24420 * 23 21 16 42 42 H 1.09005 * 109.47258 * 60.24016 * 23 21 16 43 43 H 1.09003 * 111.12018 * 270.23938 * 26 24 23 44 44 H 1.09002 * 111.12685 * 34.39998 * 26 24 23 45 45 H 1.09000 * 110.36948 * 204.79830 * 27 26 24 46 46 H 1.09000 * 110.21311 * 82.74932 * 27 26 24 47 47 H 1.09005 * 109.82524 * 238.76933 * 29 28 27 48 48 H 1.09003 * 109.82920 * 117.80335 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2031 -0.0010 9 7 1.3235 -2.3905 -0.0005 10 6 1.9975 -3.5577 -0.0005 11 8 3.2104 -3.5577 -0.0010 12 6 1.2441 -4.8629 -0.0011 13 7 2.1961 -5.9763 -0.0016 14 6 1.7470 -7.2470 -0.0017 15 8 0.5555 -7.4707 0.0918 16 7 2.6185 -8.2698 -0.1054 17 6 4.0703 -8.0303 -0.1105 18 6 4.6771 -8.7635 -1.3124 19 8 4.2592 -10.1305 -1.2898 20 6 2.8468 -10.3128 -1.4140 21 6 2.1462 -9.6590 -0.2174 22 1 2.3903 -10.2049 0.6939 23 6 0.6320 -9.6725 -0.4363 24 6 0.1454 -11.1189 -0.5460 25 1 0.4731 -11.7029 0.3140 26 6 -1.3996 -11.1725 -0.6943 27 6 -1.5709 -12.4976 -1.4842 28 8 -0.4501 -12.5506 -2.3811 29 6 0.6284 -11.7626 -1.8635 30 1 -0.4850 0.8400 0.0004 31 1 0.3536 -2.3906 -0.0005 32 1 0.6177 -4.9204 -0.8913 33 1 0.6171 -4.9209 0.8886 34 1 3.1498 -5.7990 -0.0019 35 1 4.5086 -8.4119 0.8117 36 1 4.2664 -6.9615 -0.1954 37 1 5.7646 -8.7143 -1.2577 38 1 4.3366 -8.2938 -2.2352 39 1 2.6174 -11.3783 -1.4326 40 1 2.4989 -9.8495 -2.3373 41 1 0.1389 -9.1861 0.4053 42 1 0.3930 -9.1380 -1.3558 43 1 -1.8860 -11.2264 0.2797 44 1 -1.7688 -10.3233 -1.2693 45 1 -2.5048 -12.4863 -2.0461 46 1 -1.5505 -13.3478 -0.8024 47 1 0.8946 -10.9848 -2.5792 48 1 1.4915 -12.3993 -1.6694 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680957602.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:53 Heat of formation + Delta-G solvation = -125.401605 kcal Electronic energy + Delta-G solvation = -30767.805549 eV Core-core repulsion = 26438.146464 eV Total energy + Delta-G solvation = -4329.659086 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.05920 -39.62124 -38.76091 -38.07926 -35.46773 -34.79090 -34.23517 -33.47760 -31.61718 -31.40408 -29.59961 -28.44303 -26.88514 -26.84035 -24.50921 -23.48542 -22.46421 -22.00802 -20.84333 -19.76635 -19.58076 -18.35952 -17.92089 -17.00982 -16.94562 -16.25399 -16.15322 -15.79543 -15.74787 -15.31593 -15.13742 -14.83426 -14.59752 -14.58442 -14.49566 -14.06948 -13.83509 -13.49141 -13.39738 -13.30528 -12.71011 -12.53193 -12.21745 -12.18802 -11.98430 -11.67280 -11.63157 -11.53748 -11.38583 -11.17790 -11.06038 -10.93997 -10.78738 -10.44273 -10.41513 -10.35822 -9.73227 -9.68870 -9.22317 -8.93744 -8.67971 -8.49390 -8.14319 -6.55399 -3.97536 2.47215 3.07084 3.19843 3.23000 3.26216 3.42745 3.69989 3.72778 3.83800 4.09265 4.21504 4.39997 4.50007 4.59793 4.69730 4.77089 4.80585 4.85492 4.92681 4.95059 4.98400 5.11672 5.13374 5.25048 5.30020 5.36550 5.42681 5.48354 5.50043 5.56567 5.60435 5.66020 5.82410 5.85586 5.94046 6.02441 6.10319 6.16950 6.48253 6.70515 6.74002 6.83114 6.89283 7.42438 7.88341 8.03503 8.40518 8.67205 9.00680 9.35045 9.82537 10.61499 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017303 B = 0.002312 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.790062 B =12108.577899 C =13372.688577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.548 5.548 10 C 0.428 3.572 11 O -0.599 6.599 12 C 0.128 3.872 13 N -0.724 5.724 14 C 0.711 3.289 15 O -0.586 6.586 16 N -0.632 5.632 17 C 0.074 3.926 18 C 0.047 3.953 19 O -0.379 6.379 20 C 0.033 3.967 21 C 0.133 3.867 22 H 0.078 0.922 23 C -0.106 4.106 24 C -0.131 4.131 25 H 0.084 0.916 26 C -0.147 4.147 27 C 0.049 3.951 28 O -0.388 6.388 29 C 0.044 3.956 30 H 0.274 0.726 31 H 0.396 0.604 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.405 0.595 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.058 0.942 39 H 0.115 0.885 40 H 0.058 0.942 41 H 0.118 0.882 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.058 0.942 47 H 0.073 0.927 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.343 -22.287 -1.207 22.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.183 5.183 10 C 0.213 3.787 11 O -0.486 6.486 12 C -0.001 4.001 13 N -0.384 5.384 14 C 0.413 3.587 15 O -0.466 6.466 16 N -0.372 5.372 17 C -0.050 4.050 18 C -0.031 4.031 19 O -0.297 6.297 20 C -0.044 4.044 21 C 0.029 3.971 22 H 0.096 0.904 23 C -0.143 4.143 24 C -0.150 4.150 25 H 0.103 0.897 26 C -0.185 4.185 27 C -0.027 4.027 28 O -0.307 6.307 29 C -0.032 4.032 30 H 0.084 0.916 31 H 0.230 0.770 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.245 0.755 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.125 0.875 38 H 0.076 0.924 39 H 0.132 0.868 40 H 0.076 0.924 41 H 0.136 0.864 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.077 0.923 47 H 0.091 0.909 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.273 -22.474 -1.327 22.549 hybrid contribution 0.139 1.411 0.233 1.437 sum 1.412 -21.062 -1.094 21.138 Atomic orbital electron populations 1.69616 1.06022 1.28478 1.49290 1.25333 0.95670 0.99964 0.96761 0.85758 0.79674 0.80801 0.77861 1.19131 1.20589 1.20584 1.19771 0.93477 0.81959 1.48202 0.87623 1.41795 1.09502 1.04468 1.62520 1.19747 0.88284 0.85004 0.85622 1.90485 1.13771 1.86863 1.57497 1.20795 0.91231 0.84894 1.03142 1.45059 1.11329 1.03417 1.78569 1.15790 0.84766 0.80390 0.77797 1.90857 1.14344 1.82826 1.58537 1.47256 1.05473 1.05627 1.78798 1.22384 0.80666 1.01979 0.99924 1.22995 1.00350 0.82602 0.97158 1.87971 1.22340 1.25090 1.94333 1.23776 0.81196 1.02273 0.97142 1.21798 0.95640 0.80908 0.98740 0.90398 1.22230 0.92584 0.93028 1.06484 1.22958 0.95894 0.98274 0.97857 0.89717 1.23301 0.95403 0.98250 1.01524 1.23427 0.90008 0.96884 0.92371 1.88408 1.24356 1.71060 1.46893 1.23808 0.89907 0.94316 0.95143 0.91598 0.77015 0.90081 0.89888 0.75519 0.90361 0.88703 0.87451 0.92370 0.86756 0.92376 0.86418 0.90826 0.89766 0.89926 0.89863 0.92349 0.90857 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.57 13.05 55.50 0.72 -22.85 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.25 29.55 -169.99 -5.02 15.23 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.30 -8.15 9.68 -14.94 -0.14 -8.29 16 8 H 0.11 2.95 7.16 -52.48 -0.38 2.57 16 9 N -0.55 -13.33 5.29 -10.96 -0.06 -13.39 16 10 C 0.43 9.57 7.85 -10.98 -0.09 9.49 16 11 O -0.60 -14.95 15.24 5.55 0.08 -14.86 16 12 C 0.13 2.29 6.16 -5.20 -0.03 2.26 16 13 N -0.72 -11.81 5.44 -66.42 -0.36 -12.17 16 14 C 0.71 10.95 8.16 -86.93 -0.71 10.24 16 15 O -0.59 -10.05 12.09 5.28 0.06 -9.99 16 16 N -0.63 -7.78 3.02 -170.43 -0.51 -8.29 16 17 C 0.07 0.75 6.63 -3.53 -0.02 0.73 16 18 C 0.05 0.43 6.98 37.31 0.26 0.69 16 19 O -0.38 -3.95 10.74 -35.23 -0.38 -4.33 16 20 C 0.03 0.31 4.74 37.31 0.18 0.49 16 21 C 0.13 1.39 3.19 -67.42 -0.22 1.18 16 22 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 23 C -0.11 -1.15 2.82 -26.73 -0.08 -1.23 16 24 C -0.13 -1.12 2.94 -88.68 -0.26 -1.38 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 C -0.15 -1.23 6.64 -24.34 -0.16 -1.39 16 27 C 0.05 0.41 7.78 38.33 0.30 0.71 16 28 O -0.39 -4.19 11.36 -35.23 -0.40 -4.59 16 29 C 0.04 0.39 5.46 37.88 0.21 0.60 16 30 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.40 9.27 7.90 -40.82 -0.32 8.95 16 32 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.40 6.50 4.95 -40.81 -0.20 6.30 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.99 5.66 -51.93 -0.29 0.70 16 37 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.11 0.88 4.59 -51.93 -0.24 0.64 16 40 H 0.06 0.57 7.33 -51.93 -0.38 0.19 16 41 H 0.12 1.57 5.92 -52.01 -0.31 1.26 16 42 H 0.07 0.94 7.43 -51.93 -0.39 0.55 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.77 8.04 -51.93 -0.42 0.35 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.67 6.14 -51.93 -0.32 0.35 16 48 H 0.07 0.54 6.28 -51.93 -0.33 0.21 16 LS Contribution 372.77 15.07 5.62 5.62 Total: -1.00 -31.27 372.77 -8.04 -39.31 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -6.93 Total: 15.65 kcal Atomic # 6 Polarization: 15.52 SS G_CDS: -0.86 Total: 14.66 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -0.21 Total: -56.70 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -0.63 Total: -33.77 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.27 -8.04 -39.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680957602.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.094 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds