Wall clock time and date at job start Sat Apr 11 2020 06:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86807 * 119.99633 * 2 1 4 4 H 1.48501 * 109.46923 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47022 * 300.00069 * 3 2 1 6 6 H 1.48494 * 109.47180 * 60.00260 * 3 2 1 7 7 C 1.38946 * 120.00460 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99768 * 179.97438 * 7 2 1 9 9 N 1.37091 * 119.99845 * 359.97438 * 7 2 1 10 10 C 1.34783 * 119.99963 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00040 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00013 * 180.02562 * 10 9 7 13 13 N 1.46493 * 109.47362 * 179.97438 * 12 10 9 14 14 C 1.34771 * 120.00662 * 179.97438 * 13 12 10 15 15 O 1.21595 * 119.99602 * 354.92641 * 14 13 12 16 16 N 1.34772 * 120.00579 * 174.92316 * 14 13 12 17 17 C 1.47150 * 120.98061 * 4.97533 * 16 14 13 18 18 C 1.53298 * 108.38624 * 230.55773 * 17 16 14 19 19 O 1.42962 * 109.22298 * 307.69819 * 18 17 16 20 20 C 1.42959 * 114.16500 * 62.57846 * 19 18 17 21 21 C 1.47155 * 120.98431 * 184.99926 * 16 14 13 22 22 H 1.08994 * 109.71467 * 249.18179 * 21 16 14 23 23 C 1.53002 * 109.68219 * 9.71994 * 21 16 14 24 24 C 1.52993 * 109.47224 * 180.24446 * 23 21 16 25 25 H 1.08994 * 110.75557 * 53.54723 * 24 23 21 26 26 C 1.55306 * 110.84888 * 177.02426 * 24 23 21 27 27 C 1.55208 * 100.82897 * 152.17779 * 26 24 23 28 28 O 1.43648 * 105.25824 * 323.81059 * 27 26 24 29 29 C 1.43241 * 109.96799 * 24.29024 * 28 27 26 30 30 H 0.96995 * 120.00492 * 359.97438 * 1 2 3 31 31 H 0.96997 * 120.00200 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.47254 * 59.99300 * 12 10 9 33 33 H 1.09002 * 109.47044 * 300.00040 * 12 10 9 34 34 H 0.97012 * 119.99823 * 359.97438 * 13 12 10 35 35 H 1.08997 * 109.67943 * 110.83649 * 17 16 14 36 36 H 1.08997 * 109.71476 * 350.29917 * 17 16 14 37 37 H 1.09000 * 109.51354 * 187.77355 * 18 17 16 38 38 H 1.09002 * 109.51123 * 67.62282 * 18 17 16 39 39 H 1.09005 * 109.51288 * 177.49515 * 20 19 18 40 40 H 1.09000 * 109.55524 * 57.37310 * 20 19 18 41 41 H 1.08999 * 109.47081 * 300.24420 * 23 21 16 42 42 H 1.09005 * 109.47258 * 60.24016 * 23 21 16 43 43 H 1.09003 * 111.12018 * 270.23938 * 26 24 23 44 44 H 1.09002 * 111.12685 * 34.39998 * 26 24 23 45 45 H 1.09000 * 110.36948 * 204.79830 * 27 26 24 46 46 H 1.09000 * 110.21311 * 82.74932 * 27 26 24 47 47 H 1.09005 * 109.82524 * 238.76933 * 29 28 27 48 48 H 1.09003 * 109.82920 * 117.80335 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2031 -0.0010 9 7 1.3235 -2.3905 -0.0005 10 6 1.9975 -3.5577 -0.0005 11 8 3.2104 -3.5577 -0.0010 12 6 1.2441 -4.8629 -0.0011 13 7 2.1961 -5.9763 -0.0016 14 6 1.7470 -7.2470 -0.0017 15 8 0.5555 -7.4707 0.0918 16 7 2.6185 -8.2698 -0.1054 17 6 4.0703 -8.0303 -0.1105 18 6 4.6771 -8.7635 -1.3124 19 8 4.2592 -10.1305 -1.2898 20 6 2.8468 -10.3128 -1.4140 21 6 2.1462 -9.6590 -0.2174 22 1 2.3903 -10.2049 0.6939 23 6 0.6320 -9.6725 -0.4363 24 6 0.1454 -11.1189 -0.5460 25 1 0.4731 -11.7029 0.3140 26 6 -1.3996 -11.1725 -0.6943 27 6 -1.5709 -12.4976 -1.4842 28 8 -0.4501 -12.5506 -2.3811 29 6 0.6284 -11.7626 -1.8635 30 1 -0.4850 0.8400 0.0004 31 1 0.3536 -2.3906 -0.0005 32 1 0.6177 -4.9204 -0.8913 33 1 0.6171 -4.9209 0.8886 34 1 3.1498 -5.7990 -0.0019 35 1 4.5086 -8.4119 0.8117 36 1 4.2664 -6.9615 -0.1954 37 1 5.7646 -8.7143 -1.2577 38 1 4.3366 -8.2938 -2.2352 39 1 2.6174 -11.3783 -1.4326 40 1 2.4989 -9.8495 -2.3373 41 1 0.1389 -9.1861 0.4053 42 1 0.3930 -9.1380 -1.3558 43 1 -1.8860 -11.2264 0.2797 44 1 -1.7688 -10.3233 -1.2693 45 1 -2.5048 -12.4863 -2.0461 46 1 -1.5505 -13.3478 -0.8024 47 1 0.8946 -10.9848 -2.5792 48 1 1.4915 -12.3993 -1.6694 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001680957602.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:52 Heat of formation + Delta-G solvation = -148.784069 kcal Electronic energy + Delta-G solvation = -30768.819489 eV Core-core repulsion = 26438.146464 eV Total energy + Delta-G solvation = -4330.673026 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -42.06753 -40.59430 -40.10642 -39.33944 -36.56331 -36.04866 -35.77613 -34.71303 -33.37547 -32.35727 -30.37285 -29.67279 -28.07835 -27.69664 -26.29779 -24.28777 -23.26096 -22.92168 -21.69520 -21.30633 -20.82111 -20.08957 -19.23004 -17.89314 -17.79783 -17.40257 -17.27118 -17.04313 -16.79580 -16.56596 -16.13607 -16.10871 -15.93961 -15.85240 -15.48950 -15.32076 -15.10653 -14.70968 -14.40198 -14.14233 -13.96209 -13.58286 -13.55937 -13.45202 -13.32138 -12.92959 -12.90748 -12.47635 -12.45124 -12.23784 -12.19737 -12.11625 -11.80044 -11.70775 -11.58971 -11.56149 -11.25763 -10.57070 -10.46458 -10.32484 -10.21616 -10.09647 -9.49376 -8.52072 -6.02156 1.34363 1.36927 1.43705 1.56963 1.88050 2.04014 2.26347 2.68443 2.72113 3.04072 3.12951 3.15356 3.49057 3.60868 3.71331 3.87303 3.91163 4.03199 4.06772 4.15224 4.20107 4.23131 4.29800 4.38101 4.41054 4.44759 4.49131 4.54007 4.63411 4.71171 4.79416 4.80880 4.86687 4.92388 4.97094 5.09325 5.16704 5.32686 5.35394 5.38445 5.62922 5.77117 5.91476 6.00382 6.09138 6.46737 6.82958 7.02714 7.40123 7.48262 7.93154 8.65068 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017303 B = 0.002312 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.790062 B =12108.577899 C =13372.688577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.433 3.567 11 O -0.624 6.624 12 C 0.143 3.857 13 N -0.728 5.728 14 C 0.707 3.293 15 O -0.607 6.607 16 N -0.629 5.629 17 C 0.071 3.929 18 C 0.048 3.952 19 O -0.386 6.386 20 C 0.039 3.961 21 C 0.130 3.870 22 H 0.092 0.908 23 C -0.092 4.092 24 C -0.123 4.123 25 H 0.103 0.897 26 C -0.148 4.148 27 C 0.047 3.953 28 O -0.411 6.411 29 C 0.043 3.957 30 H 0.280 0.720 31 H 0.399 0.601 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.406 0.594 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.132 0.868 38 H 0.052 0.948 39 H 0.135 0.865 40 H 0.051 0.949 41 H 0.094 0.906 42 H 0.049 0.951 43 H 0.096 0.904 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.075 0.925 47 H 0.066 0.934 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.977 -23.508 -0.929 23.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.220 3.780 11 O -0.513 6.513 12 C 0.014 3.986 13 N -0.387 5.387 14 C 0.409 3.591 15 O -0.488 6.488 16 N -0.368 5.368 17 C -0.052 4.052 18 C -0.029 4.029 19 O -0.304 6.304 20 C -0.038 4.038 21 C 0.027 3.973 22 H 0.109 0.891 23 C -0.130 4.130 24 C -0.142 4.142 25 H 0.121 0.879 26 C -0.185 4.185 27 C -0.029 4.029 28 O -0.331 6.331 29 C -0.032 4.032 30 H 0.089 0.911 31 H 0.233 0.767 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.246 0.754 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.150 0.850 38 H 0.070 0.930 39 H 0.152 0.848 40 H 0.069 0.931 41 H 0.112 0.888 42 H 0.068 0.932 43 H 0.115 0.885 44 H 0.085 0.915 45 H 0.108 0.892 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.913 -23.734 -1.053 23.834 hybrid contribution -0.058 1.709 0.146 1.716 sum 1.855 -22.025 -0.907 22.122 Atomic orbital electron populations 1.69680 1.07007 1.29580 1.49373 1.26125 0.96529 1.02685 0.95827 0.84820 0.78160 0.76766 0.78291 1.19386 1.19678 1.19664 1.19760 0.92945 0.83491 1.50240 0.89549 1.41841 1.09600 1.04603 1.63407 1.20419 0.88119 0.85906 0.83509 1.90461 1.15183 1.87561 1.58059 1.20572 0.90963 0.83039 1.04018 1.45016 1.11025 1.03475 1.79228 1.15911 0.84910 0.80507 0.77759 1.90870 1.15375 1.83150 1.59414 1.47358 1.06120 1.05613 1.77670 1.22561 0.79339 1.02045 1.01260 1.23089 1.01695 0.81930 0.96218 1.87968 1.22611 1.25610 1.94239 1.23793 0.80750 1.03184 0.96100 1.21995 0.95401 0.79993 0.99947 0.89066 1.21940 0.92818 0.94141 1.04086 1.22897 0.95988 0.96765 0.98574 0.87858 1.23299 0.95367 0.97879 1.01987 1.23563 0.89684 0.97188 0.92429 1.88380 1.25290 1.71374 1.48066 1.23852 0.90126 0.94389 0.94851 0.91073 0.76704 0.89078 0.88994 0.75377 0.88879 0.89205 0.84988 0.93002 0.84814 0.93083 0.88831 0.93238 0.88521 0.91543 0.89221 0.90717 0.91603 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.25 13.05 21.66 0.28 -47.97 16 2 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 3 Si 1.00 41.30 29.55 68.60 2.03 43.33 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 7 C -0.34 -18.22 9.68 84.04 0.81 -17.40 16 8 H 0.09 4.95 7.16 -2.91 -0.02 4.93 16 9 N -0.56 -27.67 5.29 -306.98 -1.62 -29.29 16 10 C 0.43 19.63 7.85 87.66 0.69 20.32 16 11 O -0.62 -31.57 15.24 -3.06 -0.05 -31.61 16 12 C 0.14 5.11 6.16 85.63 0.53 5.64 16 13 N -0.73 -23.61 5.44 -482.32 -2.63 -26.24 16 14 C 0.71 21.63 8.16 179.06 1.46 23.09 16 15 O -0.61 -20.94 12.09 -4.02 -0.05 -20.99 16 16 N -0.63 -14.93 3.02 -811.39 -2.45 -17.38 16 17 C 0.07 1.34 6.63 86.36 0.57 1.91 16 18 C 0.05 0.79 6.98 72.08 0.50 1.30 16 19 O -0.39 -7.18 10.74 -148.98 -1.60 -8.78 16 20 C 0.04 0.66 4.74 72.08 0.34 1.00 16 21 C 0.13 2.54 3.19 44.97 0.14 2.69 16 22 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 23 C -0.09 -1.97 2.82 30.59 0.09 -1.88 16 24 C -0.12 -1.94 2.94 -9.53 -0.03 -1.97 16 25 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 26 C -0.15 -2.34 6.64 32.14 0.21 -2.12 16 27 C 0.05 0.72 7.78 72.74 0.57 1.28 16 28 O -0.41 -8.34 11.36 -148.98 -1.69 -10.03 16 29 C 0.04 0.71 5.46 72.45 0.40 1.10 16 30 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 31 H 0.40 18.99 7.90 -92.71 -0.73 18.26 16 32 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 33 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 34 H 0.41 13.01 4.95 -92.70 -0.46 12.55 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.09 1.81 5.66 -2.39 -0.01 1.80 16 37 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.13 1.72 4.59 -2.38 -0.01 1.71 16 40 H 0.05 0.95 7.33 -2.39 -0.02 0.94 16 41 H 0.09 2.51 5.92 -3.66 -0.02 2.49 16 42 H 0.05 1.29 7.43 -2.38 -0.02 1.27 16 43 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.07 1.26 8.04 -2.39 -0.02 1.24 16 45 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.07 1.16 6.14 -2.38 -0.01 1.15 16 48 H 0.09 1.11 6.28 -2.39 -0.01 1.10 16 Total: -1.00 -66.90 372.77 -1.21 -68.11 By element: Atomic # 1 Polarization: 46.19 SS G_CDS: -0.19 Total: 46.00 kcal Atomic # 6 Polarization: 28.09 SS G_CDS: 6.75 Total: 34.85 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -6.42 Total: -120.87 kcal Atomic # 8 Polarization: -68.03 SS G_CDS: -3.39 Total: -71.42 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -66.90 -1.21 -68.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680957602.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.677 kcal (2) G-P(sol) polarization free energy of solvation -66.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds