Wall clock time and date at job start Sat Apr 11 2020 06:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86808 * 119.99605 * 2 1 4 4 H 1.48500 * 109.46966 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46950 * 299.99824 * 3 2 1 6 6 H 1.48494 * 109.47012 * 60.00100 * 3 2 1 7 7 C 1.38947 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00298 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99803 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99929 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99924 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.47042 * 179.97438 * 12 10 9 14 14 C 1.34780 * 119.99607 * 179.97438 * 13 12 10 15 15 O 1.21589 * 120.00306 * 355.04646 * 14 13 12 16 16 N 1.34777 * 119.99426 * 175.04358 * 14 13 12 17 17 C 1.47148 * 120.98776 * 5.50298 * 16 14 13 18 18 C 1.53295 * 108.38552 * 129.48167 * 17 16 14 19 19 O 1.42963 * 109.21855 * 52.30906 * 18 17 16 20 20 C 1.42960 * 114.16638 * 297.41365 * 19 18 17 21 21 C 1.47154 * 120.97960 * 185.52617 * 16 14 13 22 22 H 1.08994 * 109.68517 * 110.75496 * 21 16 14 23 23 C 1.52998 * 109.68402 * 350.23454 * 21 16 14 24 24 C 1.52992 * 109.47672 * 180.79378 * 23 21 16 25 25 H 1.09000 * 110.98932 * 58.57125 * 24 23 21 26 26 C 1.55452 * 111.18949 * 182.72878 * 24 23 21 27 27 C 1.54379 * 102.18898 * 152.00654 * 26 24 23 28 28 O 1.43235 * 107.66549 * 338.74203 * 27 26 24 29 29 C 1.43639 * 109.97149 * 358.24273 * 28 27 26 30 30 H 0.97001 * 120.00457 * 0.02562 * 1 2 3 31 31 H 0.97002 * 120.00233 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46765 * 60.00330 * 12 10 9 33 33 H 1.09000 * 109.47006 * 300.00331 * 12 10 9 34 34 H 0.96996 * 120.00423 * 0.02562 * 13 12 10 35 35 H 1.08994 * 109.68678 * 249.21319 * 17 16 14 36 36 H 1.09000 * 109.67695 * 9.76389 * 17 16 14 37 37 H 1.09005 * 109.51400 * 172.22642 * 18 17 16 38 38 H 1.08992 * 109.51833 * 292.38569 * 18 17 16 39 39 H 1.09001 * 109.51635 * 302.65906 * 20 19 18 40 40 H 1.08999 * 109.51430 * 182.50470 * 20 19 18 41 41 H 1.09007 * 109.46595 * 60.79275 * 23 21 16 42 42 H 1.08999 * 109.47253 * 300.79673 * 23 21 16 43 43 H 1.09000 * 110.83179 * 33.86006 * 26 24 23 44 44 H 1.08999 * 110.92215 * 270.19867 * 26 24 23 45 45 H 1.08997 * 109.82935 * 219.17567 * 27 26 24 46 46 H 1.09006 * 109.82700 * 98.30162 * 27 26 24 47 47 H 1.09006 * 110.31089 * 143.34382 * 29 28 27 48 48 H 1.08998 * 110.31042 * 265.50985 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.7080 1.3466 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5577 -0.0001 12 6 1.2440 -4.8629 -0.0011 13 7 2.1961 -5.9764 -0.0016 14 6 1.7468 -7.2471 -0.0017 15 8 0.5552 -7.4707 0.0896 16 7 2.6186 -8.2699 -0.1030 17 6 4.0706 -8.0316 -0.0938 18 6 4.7073 -8.9644 0.9427 19 8 4.2859 -10.3069 0.6892 20 6 2.8768 -10.5119 0.8164 21 6 2.1465 -9.6582 -0.2265 22 1 2.3650 -10.0327 -1.2265 23 6 0.6386 -9.7141 0.0265 24 6 0.1562 -11.1618 -0.0836 25 1 0.6752 -11.8016 0.6301 26 6 -1.3846 -11.2561 0.0993 27 6 -1.7342 -12.5145 -0.7239 28 8 -0.6699 -12.7327 -1.6574 29 6 0.3151 -11.6950 -1.5298 30 1 -0.4851 0.8400 -0.0004 31 1 0.3535 -2.3907 -0.0005 32 1 0.6178 -4.9205 -0.8914 33 1 0.6170 -4.9208 0.8886 34 1 3.1497 -5.7991 -0.0012 35 1 4.4836 -8.2424 -1.0802 36 1 4.2706 -6.9941 0.1742 37 1 5.7931 -8.9037 0.8690 38 1 4.3922 -8.6667 1.9427 39 1 2.5551 -10.2197 1.8160 40 1 2.6457 -11.5643 0.6519 41 1 0.1231 -9.1021 -0.7138 42 1 0.4234 -9.3344 1.0252 43 1 -1.8783 -10.3750 -0.3106 44 1 -1.6443 -11.3946 1.1488 45 1 -2.6700 -12.3574 -1.2601 46 1 -1.8276 -13.3753 -0.0617 47 1 1.3154 -12.1029 -1.6749 48 1 0.1220 -10.8996 -2.2496 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680957605.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:05 Heat of formation + Delta-G solvation = -136.147551 kcal Electronic energy + Delta-G solvation = -30634.030591 eV Core-core repulsion = 26303.905526 eV Total energy + Delta-G solvation = -4330.125065 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.99384 -39.55037 -38.79690 -38.07964 -35.44997 -34.79372 -34.21465 -33.44560 -31.54445 -31.39119 -29.69869 -28.49847 -27.00919 -26.22056 -24.56945 -23.61636 -22.59605 -22.10735 -20.66488 -19.82163 -19.53260 -18.27457 -17.85022 -17.15610 -16.63742 -16.38545 -16.06896 -15.95772 -15.60068 -15.34368 -15.15469 -14.99900 -14.61444 -14.52118 -14.44937 -13.96068 -13.74649 -13.54705 -13.40161 -13.24536 -13.00858 -12.57778 -12.22223 -12.03332 -11.91441 -11.74444 -11.72017 -11.65813 -11.42036 -11.17758 -11.06855 -10.83894 -10.75880 -10.44410 -10.42599 -10.35916 -9.74764 -9.68915 -9.29069 -8.89623 -8.68031 -8.49957 -8.14404 -6.55507 -3.97664 2.47194 3.06997 3.19738 3.22362 3.26143 3.48473 3.65957 3.69947 3.86135 4.09685 4.21079 4.44140 4.51520 4.65198 4.71547 4.74195 4.79939 4.85856 4.91690 4.95573 5.00754 5.13266 5.16736 5.18907 5.31409 5.39753 5.46230 5.47777 5.51110 5.60267 5.61809 5.67466 5.82599 5.85557 5.93918 6.02266 6.10059 6.17552 6.48305 6.70032 6.75056 6.79587 6.89256 7.42342 7.88284 8.03402 8.40399 8.66352 9.00586 9.34959 9.82450 10.61375 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016374 B = 0.002309 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.627080 B =12122.651589 C =13539.865088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.548 5.548 10 C 0.428 3.572 11 O -0.599 6.599 12 C 0.128 3.872 13 N -0.724 5.724 14 C 0.710 3.290 15 O -0.586 6.586 16 N -0.633 5.633 17 C 0.074 3.926 18 C 0.048 3.952 19 O -0.379 6.379 20 C 0.048 3.952 21 C 0.132 3.868 22 H 0.078 0.922 23 C -0.094 4.094 24 C -0.133 4.133 25 H 0.083 0.917 26 C -0.148 4.148 27 C 0.050 3.950 28 O -0.388 6.388 29 C 0.053 3.947 30 H 0.274 0.726 31 H 0.396 0.604 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.405 0.595 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.083 0.917 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.533 -22.081 1.057 22.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.183 5.183 10 C 0.213 3.787 11 O -0.486 6.486 12 C -0.001 4.001 13 N -0.384 5.384 14 C 0.412 3.588 15 O -0.465 6.465 16 N -0.372 5.372 17 C -0.049 4.049 18 C -0.030 4.030 19 O -0.298 6.298 20 C -0.029 4.029 21 C 0.028 3.972 22 H 0.096 0.904 23 C -0.132 4.132 24 C -0.153 4.153 25 H 0.101 0.899 26 C -0.186 4.186 27 C -0.026 4.026 28 O -0.308 6.308 29 C -0.023 4.023 30 H 0.084 0.916 31 H 0.230 0.770 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.245 0.755 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.126 0.874 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.101 0.899 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.456 -22.319 0.914 22.385 hybrid contribution 0.072 1.466 0.243 1.488 sum 1.528 -20.854 1.158 20.941 Atomic orbital electron populations 1.69619 1.06022 1.28475 1.49295 1.25333 0.95671 0.99965 0.96761 0.85757 0.79674 0.80800 0.77860 1.19131 1.20580 1.20594 1.19772 0.93476 0.81958 1.48203 0.87623 1.41797 1.09501 1.04472 1.62526 1.19748 0.88286 0.85006 0.85616 1.90486 1.13771 1.86864 1.57491 1.20795 0.91230 0.84898 1.03129 1.45057 1.11325 1.03421 1.78564 1.15795 0.84781 0.80388 0.77875 1.90912 1.14294 1.83020 1.58322 1.47264 1.05454 1.05673 1.78806 1.22382 0.80592 1.01061 1.00911 1.22990 1.00176 0.82246 0.97565 1.87960 1.22625 1.27843 1.91328 1.23181 0.81109 1.00386 0.98268 1.21817 0.95635 0.80299 0.99441 0.90428 1.22050 0.92375 0.92849 1.05926 1.23173 0.96265 0.98607 0.97219 0.89850 1.23149 0.95565 0.98554 1.01297 1.23114 0.90787 0.97386 0.91319 1.88381 1.33623 1.49076 1.59679 1.23514 0.92434 0.90381 0.95969 0.91600 0.77017 0.90054 0.89932 0.75538 0.90317 0.88731 0.87424 0.92432 0.92443 0.87738 0.87955 0.89996 0.89973 0.90055 0.91590 0.91520 0.89868 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.56 13.05 55.50 0.72 -22.84 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.24 29.55 -169.99 -5.02 15.21 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.30 -8.14 9.68 -14.93 -0.14 -8.28 16 8 H 0.11 2.95 7.16 -52.49 -0.38 2.57 16 9 N -0.55 -13.32 5.29 -10.96 -0.06 -13.38 16 10 C 0.43 9.56 7.85 -10.99 -0.09 9.47 16 11 O -0.60 -14.93 15.24 5.55 0.08 -14.84 16 12 C 0.13 2.28 6.16 -5.19 -0.03 2.25 16 13 N -0.72 -11.74 5.44 -66.41 -0.36 -12.10 16 14 C 0.71 10.83 8.23 -86.91 -0.72 10.11 16 15 O -0.59 -9.96 11.90 5.29 0.06 -9.90 16 16 N -0.63 -7.66 3.02 -170.44 -0.51 -8.18 16 17 C 0.07 0.74 6.57 -3.54 -0.02 0.72 16 18 C 0.05 0.42 6.99 37.31 0.26 0.68 16 19 O -0.38 -3.84 10.74 -35.23 -0.38 -4.22 16 20 C 0.05 0.43 5.72 37.31 0.21 0.65 16 21 C 0.13 1.35 3.04 -67.42 -0.20 1.15 16 22 H 0.08 0.76 7.48 -51.93 -0.39 0.37 16 23 C -0.09 -1.01 2.70 -26.74 -0.07 -1.08 16 24 C -0.13 -1.14 2.78 -88.29 -0.25 -1.39 16 25 H 0.08 0.62 6.67 -51.93 -0.35 0.28 16 26 C -0.15 -1.24 6.52 -24.71 -0.16 -1.40 16 27 C 0.05 0.44 7.79 37.88 0.30 0.73 16 28 O -0.39 -4.27 11.36 -35.23 -0.40 -4.67 16 29 C 0.05 0.49 6.42 38.19 0.25 0.74 16 30 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 31 H 0.40 9.26 7.90 -40.82 -0.32 8.94 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 33 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.40 6.47 5.00 -40.82 -0.20 6.27 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.97 5.78 -51.93 -0.30 0.67 16 37 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.10 0.75 6.90 -51.93 -0.36 0.39 16 41 H 0.10 1.36 6.30 -51.93 -0.33 1.03 16 42 H 0.08 1.02 7.22 -51.93 -0.38 0.64 16 43 H 0.08 0.76 8.04 -51.93 -0.42 0.34 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 48 H 0.06 0.61 8.01 -51.93 -0.42 0.20 16 LS Contribution 378.97 15.07 5.71 5.71 Total: -1.00 -31.21 378.97 -8.11 -39.32 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -7.19 Total: 14.96 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: -0.77 Total: 14.92 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.21 Total: -56.49 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.63 Total: -33.63 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.21 -8.11 -39.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680957605.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.831 kcal (2) G-P(sol) polarization free energy of solvation -31.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds