Wall clock time and date at job start Sat Apr 11 2020 06:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86808 * 119.99605 * 2 1 4 4 H 1.48500 * 109.46966 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46950 * 299.99824 * 3 2 1 6 6 H 1.48494 * 109.47012 * 60.00100 * 3 2 1 7 7 C 1.38947 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00298 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99803 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99929 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99924 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.47042 * 179.97438 * 12 10 9 14 14 C 1.34780 * 119.99607 * 179.97438 * 13 12 10 15 15 O 1.21589 * 120.00306 * 355.04646 * 14 13 12 16 16 N 1.34777 * 119.99426 * 175.04358 * 14 13 12 17 17 C 1.47148 * 120.98776 * 5.50298 * 16 14 13 18 18 C 1.53295 * 108.38552 * 129.48167 * 17 16 14 19 19 O 1.42963 * 109.21855 * 52.30906 * 18 17 16 20 20 C 1.42960 * 114.16638 * 297.41365 * 19 18 17 21 21 C 1.47154 * 120.97960 * 185.52617 * 16 14 13 22 22 H 1.08994 * 109.68517 * 110.75496 * 21 16 14 23 23 C 1.52998 * 109.68402 * 350.23454 * 21 16 14 24 24 C 1.52992 * 109.47672 * 180.79378 * 23 21 16 25 25 H 1.09000 * 110.98932 * 58.57125 * 24 23 21 26 26 C 1.55452 * 111.18949 * 182.72878 * 24 23 21 27 27 C 1.54379 * 102.18898 * 152.00654 * 26 24 23 28 28 O 1.43235 * 107.66549 * 338.74203 * 27 26 24 29 29 C 1.43639 * 109.97149 * 358.24273 * 28 27 26 30 30 H 0.97001 * 120.00457 * 0.02562 * 1 2 3 31 31 H 0.97002 * 120.00233 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46765 * 60.00330 * 12 10 9 33 33 H 1.09000 * 109.47006 * 300.00331 * 12 10 9 34 34 H 0.96996 * 120.00423 * 0.02562 * 13 12 10 35 35 H 1.08994 * 109.68678 * 249.21319 * 17 16 14 36 36 H 1.09000 * 109.67695 * 9.76389 * 17 16 14 37 37 H 1.09005 * 109.51400 * 172.22642 * 18 17 16 38 38 H 1.08992 * 109.51833 * 292.38569 * 18 17 16 39 39 H 1.09001 * 109.51635 * 302.65906 * 20 19 18 40 40 H 1.08999 * 109.51430 * 182.50470 * 20 19 18 41 41 H 1.09007 * 109.46595 * 60.79275 * 23 21 16 42 42 H 1.08999 * 109.47253 * 300.79673 * 23 21 16 43 43 H 1.09000 * 110.83179 * 33.86006 * 26 24 23 44 44 H 1.08999 * 110.92215 * 270.19867 * 26 24 23 45 45 H 1.08997 * 109.82935 * 219.17567 * 27 26 24 46 46 H 1.09006 * 109.82700 * 98.30162 * 27 26 24 47 47 H 1.09006 * 110.31089 * 143.34382 * 29 28 27 48 48 H 1.08998 * 110.31042 * 265.50985 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.7080 1.3466 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5577 -0.0001 12 6 1.2440 -4.8629 -0.0011 13 7 2.1961 -5.9764 -0.0016 14 6 1.7468 -7.2471 -0.0017 15 8 0.5552 -7.4707 0.0896 16 7 2.6186 -8.2699 -0.1030 17 6 4.0706 -8.0316 -0.0938 18 6 4.7073 -8.9644 0.9427 19 8 4.2859 -10.3069 0.6892 20 6 2.8768 -10.5119 0.8164 21 6 2.1465 -9.6582 -0.2265 22 1 2.3650 -10.0327 -1.2265 23 6 0.6386 -9.7141 0.0265 24 6 0.1562 -11.1618 -0.0836 25 1 0.6752 -11.8016 0.6301 26 6 -1.3846 -11.2561 0.0993 27 6 -1.7342 -12.5145 -0.7239 28 8 -0.6699 -12.7327 -1.6574 29 6 0.3151 -11.6950 -1.5298 30 1 -0.4851 0.8400 -0.0004 31 1 0.3535 -2.3907 -0.0005 32 1 0.6178 -4.9205 -0.8914 33 1 0.6170 -4.9208 0.8886 34 1 3.1497 -5.7991 -0.0012 35 1 4.4836 -8.2424 -1.0802 36 1 4.2706 -6.9941 0.1742 37 1 5.7931 -8.9037 0.8690 38 1 4.3922 -8.6667 1.9427 39 1 2.5551 -10.2197 1.8160 40 1 2.6457 -11.5643 0.6519 41 1 0.1231 -9.1021 -0.7138 42 1 0.4234 -9.3344 1.0252 43 1 -1.8783 -10.3750 -0.3106 44 1 -1.6443 -11.3946 1.1488 45 1 -2.6700 -12.3574 -1.2601 46 1 -1.8276 -13.3753 -0.0617 47 1 1.3154 -12.1029 -1.6749 48 1 0.1220 -10.8996 -2.2496 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001680957605.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:04 Heat of formation + Delta-G solvation = -159.269612 kcal Electronic energy + Delta-G solvation = -30635.033239 eV Core-core repulsion = 26303.905526 eV Total energy + Delta-G solvation = -4331.127713 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.00855 -40.51318 -40.11695 -39.34219 -36.55016 -36.03821 -35.76093 -34.65306 -33.37317 -32.28082 -30.45824 -29.67909 -28.26059 -27.01859 -26.34625 -24.43622 -23.43618 -22.94923 -21.59910 -21.17831 -20.91387 -20.06545 -19.07918 -17.92720 -17.63496 -17.50908 -17.18517 -17.02345 -16.73483 -16.61516 -16.21718 -16.05069 -15.89289 -15.87517 -15.60676 -15.33448 -14.85964 -14.64751 -14.45558 -14.12266 -13.92293 -13.79515 -13.56246 -13.54225 -13.35899 -12.92415 -12.71624 -12.47187 -12.45417 -12.42615 -12.23442 -12.11640 -11.78961 -11.61655 -11.58844 -11.55056 -11.23256 -10.56912 -10.48343 -10.40180 -10.18199 -10.08742 -9.47692 -8.51974 -6.02064 1.34473 1.37967 1.43986 1.57062 1.88340 2.04600 2.26511 2.71421 2.78504 2.97293 3.13800 3.15470 3.47835 3.66530 3.75600 3.92637 3.95587 4.00559 4.07046 4.16914 4.20227 4.22698 4.30395 4.41255 4.44018 4.45053 4.45440 4.59860 4.64853 4.77457 4.79408 4.83316 4.87046 4.91106 5.00201 5.09130 5.22952 5.29023 5.35582 5.38670 5.61437 5.78112 5.91623 6.04198 6.06982 6.46889 6.83795 7.02858 7.40312 7.48467 7.93374 8.65148 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016374 B = 0.002309 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.627080 B =12122.651589 C =13539.865088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.996 3.004 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.433 3.567 11 O -0.625 6.625 12 C 0.143 3.857 13 N -0.728 5.728 14 C 0.706 3.294 15 O -0.607 6.607 16 N -0.630 5.630 17 C 0.070 3.930 18 C 0.050 3.950 19 O -0.387 6.387 20 C 0.053 3.947 21 C 0.128 3.872 22 H 0.086 0.914 23 C -0.080 4.080 24 C -0.124 4.124 25 H 0.103 0.897 26 C -0.148 4.148 27 C 0.047 3.953 28 O -0.409 6.409 29 C 0.052 3.948 30 H 0.280 0.720 31 H 0.399 0.601 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.406 0.594 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.132 0.868 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.128 0.872 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.095 0.905 45 H 0.068 0.932 46 H 0.083 0.917 47 H 0.098 0.902 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.232 -23.263 1.387 23.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.221 3.779 11 O -0.513 6.513 12 C 0.014 3.986 13 N -0.388 5.388 14 C 0.408 3.592 15 O -0.488 6.488 16 N -0.368 5.368 17 C -0.053 4.053 18 C -0.027 4.027 19 O -0.305 6.305 20 C -0.025 4.025 21 C 0.025 3.975 22 H 0.104 0.896 23 C -0.118 4.118 24 C -0.143 4.143 25 H 0.121 0.879 26 C -0.185 4.185 27 C -0.029 4.029 28 O -0.329 6.329 29 C -0.024 4.024 30 H 0.089 0.911 31 H 0.233 0.767 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.246 0.754 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.149 0.851 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.146 0.854 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.113 0.887 45 H 0.087 0.913 46 H 0.101 0.899 47 H 0.116 0.884 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.160 -23.542 1.243 23.674 hybrid contribution -0.146 1.753 0.124 1.763 sum 2.013 -21.790 1.368 21.925 Atomic orbital electron populations 1.69683 1.07006 1.29572 1.49390 1.26126 0.96528 1.02686 0.95833 0.84819 0.78162 0.76769 0.78287 1.19384 1.19681 1.19673 1.19760 0.92943 0.83493 1.50231 0.89550 1.41844 1.09599 1.04608 1.63421 1.20424 0.88121 0.85914 0.83489 1.90462 1.15188 1.87566 1.58051 1.20569 0.90963 0.83039 1.04002 1.45014 1.11009 1.03485 1.79244 1.15916 0.84920 0.80499 0.77838 1.90920 1.15330 1.83329 1.59203 1.47364 1.06088 1.05664 1.77668 1.22560 0.79278 1.01305 1.02108 1.23077 1.01423 0.81423 0.96789 1.87958 1.22983 1.28310 1.91287 1.23228 0.80541 1.01249 0.97469 1.22009 0.95461 0.79453 1.00543 0.89572 1.21751 0.92541 0.93736 1.03741 1.23094 0.96529 0.97258 0.97429 0.87914 1.23149 0.95335 0.98002 1.02049 1.23242 0.90388 0.97972 0.91307 1.88357 1.34390 1.49605 1.60545 1.23558 0.92891 0.89995 0.95934 0.91079 0.76707 0.89071 0.89023 0.75403 0.89188 0.89203 0.85052 0.92730 0.92697 0.85447 0.90808 0.91839 0.91396 0.88668 0.91335 0.89920 0.88353 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.22 13.05 21.66 0.28 -47.94 16 2 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 3 Si 1.00 41.27 29.55 68.60 2.03 43.29 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.33 -18.20 9.68 84.04 0.81 -17.38 16 8 H 0.09 4.94 7.16 -2.91 -0.02 4.92 16 9 N -0.56 -27.64 5.29 -306.99 -1.62 -29.26 16 10 C 0.43 19.59 7.85 87.66 0.69 20.28 16 11 O -0.62 -31.52 15.24 -3.07 -0.05 -31.57 16 12 C 0.14 5.10 6.16 85.63 0.53 5.63 16 13 N -0.73 -23.46 5.44 -482.29 -2.62 -26.08 16 14 C 0.71 21.38 8.23 179.05 1.47 22.86 16 15 O -0.61 -20.75 11.90 -3.99 -0.05 -20.80 16 16 N -0.63 -14.70 3.02 -811.40 -2.45 -17.15 16 17 C 0.07 1.31 6.57 86.35 0.57 1.88 16 18 C 0.05 0.78 6.99 72.08 0.50 1.29 16 19 O -0.39 -6.86 10.74 -148.98 -1.60 -8.46 16 20 C 0.05 0.82 5.72 72.08 0.41 1.24 16 21 C 0.13 2.46 3.04 44.97 0.14 2.60 16 22 H 0.09 1.54 7.48 -2.39 -0.02 1.52 16 23 C -0.08 -1.67 2.70 30.59 0.08 -1.58 16 24 C -0.12 -1.95 2.78 -9.28 -0.03 -1.97 16 25 H 0.10 1.25 6.67 -2.39 -0.02 1.24 16 26 C -0.15 -2.33 6.52 31.91 0.21 -2.12 16 27 C 0.05 0.75 7.79 72.45 0.56 1.31 16 28 O -0.41 -8.47 11.36 -148.98 -1.69 -10.17 16 29 C 0.05 0.90 6.42 72.65 0.47 1.37 16 30 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 31 H 0.40 18.97 7.90 -92.71 -0.73 18.23 16 32 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 33 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 34 H 0.41 12.94 5.00 -92.71 -0.46 12.47 16 35 H 0.09 1.49 8.14 -2.39 -0.02 1.48 16 36 H 0.09 1.77 5.78 -2.39 -0.01 1.76 16 37 H 0.13 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.13 1.41 6.90 -2.39 -0.02 1.40 16 41 H 0.07 1.99 6.30 -2.38 -0.02 1.98 16 42 H 0.06 1.57 7.22 -2.39 -0.02 1.55 16 43 H 0.07 1.26 8.04 -2.39 -0.02 1.24 16 44 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 46 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 47 H 0.10 1.37 8.10 -2.38 -0.02 1.35 16 48 H 0.05 0.99 8.01 -2.39 -0.02 0.97 16 Total: -1.00 -66.75 378.97 -1.08 -67.84 By element: Atomic # 1 Polarization: 45.21 SS G_CDS: -0.20 Total: 45.02 kcal Atomic # 6 Polarization: 28.39 SS G_CDS: 6.88 Total: 35.27 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -6.41 Total: -120.43 kcal Atomic # 8 Polarization: -67.60 SS G_CDS: -3.39 Total: -70.99 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.29 kcal Total: -66.75 -1.08 -67.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680957605.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.434 kcal (2) G-P(sol) polarization free energy of solvation -66.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds