Wall clock time and date at job start Sat Apr 11 2020 06:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 119.99843 * 2 1 4 4 H 1.48499 * 109.47163 * 239.99752 * 3 2 1 5 5 H 1.48502 * 109.47166 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47104 * 119.99708 * 3 2 1 7 7 C 1.38949 * 120.00225 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00057 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99797 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99937 * 179.97438 * 9 7 2 11 11 O 1.21298 * 120.00083 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00003 * 180.02562 * 10 9 7 13 13 N 1.46503 * 109.47177 * 180.02562 * 12 10 9 14 14 C 1.34782 * 119.99993 * 179.97438 * 13 12 10 15 15 O 1.21587 * 119.99675 * 5.09056 * 14 13 12 16 16 N 1.34776 * 119.99544 * 184.81580 * 14 13 12 17 17 C 1.47151 * 120.98499 * 354.63517 * 16 14 13 18 18 C 1.53711 * 108.16397 * 129.43066 * 17 16 14 19 19 O 1.42970 * 109.14805 * 52.53342 * 18 17 16 20 20 C 1.42963 * 114.16565 * 297.29355 * 19 18 17 21 21 C 1.47152 * 120.97697 * 174.91088 * 16 14 13 22 22 H 1.09001 * 109.67795 * 110.79089 * 21 16 14 23 23 C 1.53000 * 109.68387 * 350.23988 * 21 16 14 24 24 C 1.53000 * 109.47164 * 182.05922 * 23 21 16 25 25 H 1.09008 * 110.33097 * 308.57872 * 24 23 21 26 26 C 1.54482 * 110.37199 * 186.32485 * 24 23 21 27 27 C 1.54513 * 104.05994 * 217.18931 * 26 24 23 28 28 C 1.54475 * 104.06581 * 359.97438 * 27 26 24 29 29 O 1.44424 * 110.37303 * 70.82545 * 24 23 21 30 30 H 0.96996 * 119.99999 * 0.02562 * 1 2 3 31 31 H 0.96998 * 119.99839 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.47530 * 59.99713 * 12 10 9 33 33 H 1.09002 * 109.46877 * 299.99721 * 12 10 9 34 34 H 0.97001 * 119.99662 * 359.97438 * 13 12 10 35 35 H 1.08997 * 109.67741 * 249.20810 * 17 16 14 36 36 H 1.08995 * 109.68260 * 9.76189 * 17 16 14 37 37 H 1.09004 * 109.65849 * 292.57204 * 18 17 16 38 38 H 1.08998 * 109.44584 * 172.36992 * 18 17 16 39 39 H 1.08996 * 109.50944 * 302.65183 * 20 19 18 40 40 H 1.09004 * 109.50702 * 182.50214 * 20 19 18 41 41 H 1.09001 * 109.46916 * 302.05537 * 23 21 16 42 42 H 1.08995 * 109.46977 * 62.05931 * 23 21 16 43 43 H 1.08997 * 110.51184 * 335.83487 * 26 24 23 44 44 H 1.08997 * 110.50689 * 98.54747 * 26 24 23 45 45 H 1.08998 * 110.51232 * 118.65074 * 27 26 24 46 46 H 1.09000 * 110.50878 * 241.35446 * 27 26 24 47 47 H 1.09003 * 110.37358 * 142.80710 * 28 27 26 48 48 H 1.09003 * 110.37532 * 265.03859 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0000 13 7 2.1959 -5.9764 0.0007 14 6 1.7466 -7.2472 0.0009 15 8 0.5552 -7.4707 -0.0930 16 7 2.6186 -8.2701 0.0995 17 6 4.0706 -8.0314 0.0904 18 6 4.6844 -8.7649 1.2936 19 8 4.2661 -10.1319 1.2728 20 6 2.8543 -10.3139 1.4055 21 6 2.1467 -9.6592 0.2136 22 1 2.3856 -10.2041 -0.6997 23 6 0.6339 -9.6725 0.4416 24 6 0.1563 -11.1162 0.6107 25 1 0.5178 -11.7335 -0.2118 26 6 -1.3860 -11.1673 0.6840 27 6 -1.6759 -12.2746 1.7219 28 6 -0.2747 -12.7619 2.1523 29 8 0.6061 -11.6498 1.8751 30 1 -0.4850 0.8400 -0.0004 31 1 0.3535 -2.3906 0.0005 32 1 0.6175 -4.9205 -0.8903 33 1 0.6169 -4.9208 0.8897 34 1 3.1496 -5.7991 0.0011 35 1 4.4998 -8.4152 -0.8351 36 1 4.2674 -6.9624 0.1712 37 1 4.3496 -8.2958 2.2189 38 1 5.7716 -8.7159 1.2324 39 1 2.5129 -9.8504 2.3310 40 1 2.6249 -11.3794 1.4247 41 1 0.3970 -9.1038 1.3409 42 1 0.1333 -9.2222 -0.4155 43 1 -1.7840 -10.2113 1.0241 44 1 -1.8057 -11.4336 -0.2860 45 1 -2.2175 -11.8661 2.5751 46 1 -2.2392 -13.0883 1.2649 47 1 -0.2652 -12.9974 3.2166 48 1 0.0195 -13.6343 1.5687 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001682374393.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:08 Heat of formation + Delta-G solvation = -134.328866 kcal Electronic energy + Delta-G solvation = -30763.198160 eV Core-core repulsion = 26433.151959 eV Total energy + Delta-G solvation = -4330.046201 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.86466 -39.52050 -38.66557 -37.99859 -35.03157 -34.69177 -34.01166 -32.86415 -32.33387 -31.38444 -30.00100 -28.37521 -26.90091 -25.96762 -24.50819 -23.46251 -22.16050 -21.86570 -21.05965 -19.73351 -19.52250 -18.30058 -17.85515 -16.88117 -16.50511 -16.21445 -16.00334 -15.76428 -15.63960 -15.32085 -15.15855 -14.94376 -14.50709 -14.44298 -14.40793 -13.92365 -13.90741 -13.50128 -13.31511 -12.89388 -12.58313 -12.35813 -12.16653 -11.97571 -11.89893 -11.72013 -11.64041 -11.54615 -11.23451 -11.12112 -11.06854 -10.85976 -10.69146 -10.52009 -10.32589 -10.26370 -10.00040 -9.64204 -9.22098 -8.87464 -8.64726 -8.39554 -8.11633 -6.52802 -3.94964 2.56669 3.12492 3.20554 3.24253 3.30015 3.56975 3.73166 3.80351 3.93256 4.13155 4.40863 4.49926 4.60495 4.70298 4.78045 4.81148 4.87415 4.93994 4.99713 5.06595 5.09264 5.15875 5.26291 5.34310 5.39706 5.45680 5.47622 5.57000 5.58872 5.70652 5.73884 5.82668 5.86605 5.91367 5.98022 6.05113 6.08078 6.24081 6.55076 6.66761 6.77580 6.97647 7.00676 7.44420 7.90623 8.10251 8.43445 8.73378 9.03012 9.37734 9.85530 10.63998 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017417 B = 0.002323 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.212240 B =12050.626852 C =13321.164753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.548 5.548 10 C 0.428 3.572 11 O -0.599 6.599 12 C 0.128 3.872 13 N -0.725 5.725 14 C 0.711 3.289 15 O -0.588 6.588 16 N -0.633 5.633 17 C 0.075 3.925 18 C 0.047 3.953 19 O -0.384 6.384 20 C 0.055 3.945 21 C 0.135 3.865 22 H 0.074 0.926 23 C -0.106 4.106 24 C 0.066 3.934 25 H 0.067 0.933 26 C -0.147 4.147 27 C -0.156 4.156 28 C 0.043 3.957 29 O -0.371 6.371 30 H 0.275 0.725 31 H 0.396 0.604 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.405 0.595 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.057 0.943 38 H 0.105 0.895 39 H 0.056 0.944 40 H 0.117 0.883 41 H 0.080 0.920 42 H 0.120 0.880 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.103 -23.871 1.948 23.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.183 5.183 10 C 0.214 3.786 11 O -0.486 6.486 12 C 0.000 4.000 13 N -0.384 5.384 14 C 0.413 3.587 15 O -0.468 6.468 16 N -0.372 5.372 17 C -0.049 4.049 18 C -0.030 4.030 19 O -0.302 6.302 20 C -0.022 4.022 21 C 0.031 3.969 22 H 0.092 0.908 23 C -0.143 4.143 24 C 0.008 3.992 25 H 0.085 0.915 26 C -0.185 4.185 27 C -0.193 4.193 28 C -0.034 4.034 29 O -0.291 6.291 30 H 0.085 0.915 31 H 0.230 0.770 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.245 0.755 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.075 0.925 38 H 0.123 0.877 39 H 0.075 0.925 40 H 0.135 0.865 41 H 0.098 0.902 42 H 0.138 0.862 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.106 0.894 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.190 -23.863 2.005 23.948 hybrid contribution -0.115 1.152 -0.107 1.162 sum 0.076 -22.712 1.898 22.791 Atomic orbital electron populations 1.69605 1.06009 1.28653 1.49207 1.25327 0.95671 0.99940 0.96763 0.85869 0.78779 0.80141 0.79158 1.19774 1.20847 1.19769 1.19675 0.93425 0.82001 1.48393 0.87737 1.41781 1.09488 1.04445 1.62578 1.19756 0.88290 0.85012 0.85571 1.90485 1.13777 1.86875 1.57473 1.20789 0.91246 0.84894 1.03113 1.45051 1.11297 1.03419 1.78668 1.15785 0.84778 0.80388 0.77773 1.90851 1.14388 1.82936 1.58624 1.47304 1.05473 1.05720 1.78685 1.22463 0.80653 1.01854 0.99911 1.23035 1.00100 0.82891 0.97024 1.87952 1.23202 1.24795 1.94248 1.23265 0.79895 1.02500 0.96585 1.21782 0.95515 0.80641 0.98950 0.90786 1.22320 0.93175 0.92507 1.06289 1.23306 0.93383 0.95935 0.86597 0.91539 1.22912 0.95986 0.99956 0.99623 1.22929 0.97992 0.98778 0.99635 1.23386 0.88692 0.90022 1.01310 1.89196 1.54431 1.46664 1.38802 0.91518 0.77011 0.89908 0.90105 0.75522 0.90424 0.88835 0.92472 0.87719 0.92517 0.86491 0.90161 0.86240 0.90117 0.90637 0.90770 0.90819 0.89389 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.77 13.05 55.50 0.72 -23.05 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.44 29.55 -169.99 -5.02 15.41 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.31 -8.25 9.68 -14.93 -0.14 -8.39 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 9 N -0.55 -13.50 5.29 -10.96 -0.06 -13.56 16 10 C 0.43 9.74 7.85 -10.99 -0.09 9.66 16 11 O -0.60 -15.17 15.24 5.54 0.08 -15.09 16 12 C 0.13 2.35 6.16 -5.19 -0.03 2.32 16 13 N -0.72 -12.27 5.45 -66.41 -0.36 -12.63 16 14 C 0.71 11.51 8.13 -86.91 -0.71 10.80 16 15 O -0.59 -10.49 12.10 5.29 0.06 -10.42 16 16 N -0.63 -8.45 3.01 -170.18 -0.51 -8.96 16 17 C 0.07 0.83 6.66 -3.32 -0.02 0.81 16 18 C 0.05 0.49 7.00 37.53 0.26 0.75 16 19 O -0.38 -4.59 10.74 -35.23 -0.38 -4.97 16 20 C 0.05 0.63 5.07 37.31 0.19 0.82 16 21 C 0.13 1.61 3.22 -67.42 -0.22 1.39 16 22 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 23 C -0.11 -1.28 2.94 -26.73 -0.08 -1.36 16 24 C 0.07 0.64 3.03 -25.95 -0.08 0.56 16 25 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 26 C -0.15 -1.27 6.63 -25.16 -0.17 -1.44 16 27 C -0.16 -1.11 7.09 -25.16 -0.18 -1.29 16 28 C 0.04 0.32 7.63 37.93 0.29 0.61 16 29 O -0.37 -3.78 8.42 -35.23 -0.30 -4.08 16 30 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 31 H 0.40 9.38 7.90 -40.82 -0.32 9.06 16 32 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 34 H 0.40 6.76 4.95 -40.82 -0.20 6.56 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 1.05 5.66 -51.93 -0.29 0.76 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.12 1.26 6.18 -51.93 -0.32 0.94 16 41 H 0.08 1.16 7.45 -51.93 -0.39 0.77 16 42 H 0.12 1.65 6.09 -51.93 -0.32 1.34 16 43 H 0.08 0.80 7.87 -51.93 -0.41 0.39 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 378.17 15.07 5.70 5.70 Total: -1.00 -30.97 378.17 -8.38 -39.35 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -7.26 Total: 16.47 kcal Atomic # 6 Polarization: 16.89 SS G_CDS: -1.07 Total: 15.82 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -0.21 Total: -58.20 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -0.53 Total: -34.56 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.97 -8.38 -39.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001682374393.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.977 kcal (2) G-P(sol) polarization free energy of solvation -30.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds