Wall clock time and date at job start Sat Apr 11 2020 06:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 119.99843 * 2 1 4 4 H 1.48499 * 109.47163 * 239.99752 * 3 2 1 5 5 H 1.48502 * 109.47166 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47104 * 119.99708 * 3 2 1 7 7 C 1.38949 * 120.00225 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00057 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99797 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99937 * 179.97438 * 9 7 2 11 11 O 1.21298 * 120.00083 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00003 * 180.02562 * 10 9 7 13 13 N 1.46503 * 109.47177 * 180.02562 * 12 10 9 14 14 C 1.34782 * 119.99993 * 179.97438 * 13 12 10 15 15 O 1.21587 * 119.99675 * 5.09056 * 14 13 12 16 16 N 1.34776 * 119.99544 * 184.81580 * 14 13 12 17 17 C 1.47151 * 120.98499 * 354.63517 * 16 14 13 18 18 C 1.53711 * 108.16397 * 129.43066 * 17 16 14 19 19 O 1.42970 * 109.14805 * 52.53342 * 18 17 16 20 20 C 1.42963 * 114.16565 * 297.29355 * 19 18 17 21 21 C 1.47152 * 120.97697 * 174.91088 * 16 14 13 22 22 H 1.09001 * 109.67795 * 110.79089 * 21 16 14 23 23 C 1.53000 * 109.68387 * 350.23988 * 21 16 14 24 24 C 1.53000 * 109.47164 * 182.05922 * 23 21 16 25 25 H 1.09008 * 110.33097 * 308.57872 * 24 23 21 26 26 C 1.54482 * 110.37199 * 186.32485 * 24 23 21 27 27 C 1.54513 * 104.05994 * 217.18931 * 26 24 23 28 28 C 1.54475 * 104.06581 * 359.97438 * 27 26 24 29 29 O 1.44424 * 110.37303 * 70.82545 * 24 23 21 30 30 H 0.96996 * 119.99999 * 0.02562 * 1 2 3 31 31 H 0.96998 * 119.99839 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.47530 * 59.99713 * 12 10 9 33 33 H 1.09002 * 109.46877 * 299.99721 * 12 10 9 34 34 H 0.97001 * 119.99662 * 359.97438 * 13 12 10 35 35 H 1.08997 * 109.67741 * 249.20810 * 17 16 14 36 36 H 1.08995 * 109.68260 * 9.76189 * 17 16 14 37 37 H 1.09004 * 109.65849 * 292.57204 * 18 17 16 38 38 H 1.08998 * 109.44584 * 172.36992 * 18 17 16 39 39 H 1.08996 * 109.50944 * 302.65183 * 20 19 18 40 40 H 1.09004 * 109.50702 * 182.50214 * 20 19 18 41 41 H 1.09001 * 109.46916 * 302.05537 * 23 21 16 42 42 H 1.08995 * 109.46977 * 62.05931 * 23 21 16 43 43 H 1.08997 * 110.51184 * 335.83487 * 26 24 23 44 44 H 1.08997 * 110.50689 * 98.54747 * 26 24 23 45 45 H 1.08998 * 110.51232 * 118.65074 * 27 26 24 46 46 H 1.09000 * 110.50878 * 241.35446 * 27 26 24 47 47 H 1.09003 * 110.37358 * 142.80710 * 28 27 26 48 48 H 1.09003 * 110.37532 * 265.03859 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0000 13 7 2.1959 -5.9764 0.0007 14 6 1.7466 -7.2472 0.0009 15 8 0.5552 -7.4707 -0.0930 16 7 2.6186 -8.2701 0.0995 17 6 4.0706 -8.0314 0.0904 18 6 4.6844 -8.7649 1.2936 19 8 4.2661 -10.1319 1.2728 20 6 2.8543 -10.3139 1.4055 21 6 2.1467 -9.6592 0.2136 22 1 2.3856 -10.2041 -0.6997 23 6 0.6339 -9.6725 0.4416 24 6 0.1563 -11.1162 0.6107 25 1 0.5178 -11.7335 -0.2118 26 6 -1.3860 -11.1673 0.6840 27 6 -1.6759 -12.2746 1.7219 28 6 -0.2747 -12.7619 2.1523 29 8 0.6061 -11.6498 1.8751 30 1 -0.4850 0.8400 -0.0004 31 1 0.3535 -2.3906 0.0005 32 1 0.6175 -4.9205 -0.8903 33 1 0.6169 -4.9208 0.8897 34 1 3.1496 -5.7991 0.0011 35 1 4.4998 -8.4152 -0.8351 36 1 4.2674 -6.9624 0.1712 37 1 4.3496 -8.2958 2.2189 38 1 5.7716 -8.7159 1.2324 39 1 2.5129 -9.8504 2.3310 40 1 2.6249 -11.3794 1.4247 41 1 0.3970 -9.1038 1.3409 42 1 0.1333 -9.2222 -0.4155 43 1 -1.7840 -10.2113 1.0241 44 1 -1.8057 -11.4336 -0.2860 45 1 -2.2175 -11.8661 2.5751 46 1 -2.2392 -13.0883 1.2649 47 1 -0.2652 -12.9974 3.2166 48 1 0.0195 -13.6343 1.5687 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001682374393.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:07 Heat of formation + Delta-G solvation = -156.693140 kcal Electronic energy + Delta-G solvation = -30764.167948 eV Core-core repulsion = 26433.151959 eV Total energy + Delta-G solvation = -4331.015989 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.98308 -40.49630 -40.06700 -39.30827 -36.41997 -35.90484 -35.70052 -33.99956 -33.35296 -33.01196 -30.82870 -29.66562 -28.19934 -26.82940 -26.32610 -24.31778 -23.22118 -22.63294 -21.85453 -21.32664 -20.88669 -20.08423 -19.22297 -17.85865 -17.56474 -17.33640 -17.12626 -17.04744 -16.61355 -16.57521 -16.24726 -16.11384 -15.98546 -15.83009 -15.67387 -15.26437 -14.90596 -14.65761 -14.57202 -13.98463 -13.75076 -13.57219 -13.53996 -13.35409 -13.22222 -12.90214 -12.68522 -12.51706 -12.47387 -12.28634 -12.16481 -12.13112 -11.90132 -11.59916 -11.56687 -11.46811 -11.24378 -10.75130 -10.56631 -10.35867 -10.23680 -10.09496 -9.48096 -8.51301 -6.01609 1.37485 1.37779 1.43886 1.54197 1.88714 2.04168 2.26959 2.71087 2.75694 3.05927 3.15142 3.15932 3.64362 3.70429 3.79128 3.91940 4.02069 4.03913 4.08841 4.15878 4.19903 4.23201 4.35881 4.41331 4.45294 4.46726 4.54646 4.61139 4.68937 4.75301 4.84144 4.88326 4.93903 5.02008 5.09538 5.12031 5.19539 5.24962 5.34385 5.38568 5.57830 5.78096 5.91629 5.96907 6.10923 6.47264 6.83285 7.02840 7.40083 7.47996 7.93569 8.65379 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017417 B = 0.002323 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.212240 B =12050.626852 C =13321.164753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.433 3.567 11 O -0.624 6.624 12 C 0.142 3.858 13 N -0.727 5.727 14 C 0.707 3.293 15 O -0.608 6.608 16 N -0.630 5.630 17 C 0.072 3.928 18 C 0.048 3.952 19 O -0.391 6.391 20 C 0.065 3.935 21 C 0.133 3.867 22 H 0.088 0.912 23 C -0.094 4.094 24 C 0.070 3.930 25 H 0.084 0.916 26 C -0.149 4.149 27 C -0.151 4.151 28 C 0.038 3.962 29 O -0.390 6.390 30 H 0.280 0.720 31 H 0.399 0.601 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.406 0.594 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.049 0.951 38 H 0.132 0.868 39 H 0.041 0.959 40 H 0.128 0.872 41 H 0.050 0.950 42 H 0.101 0.899 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.093 0.907 47 H 0.096 0.904 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.572 -25.189 1.731 25.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.220 3.780 11 O -0.513 6.513 12 C 0.014 3.986 13 N -0.387 5.387 14 C 0.409 3.591 15 O -0.489 6.489 16 N -0.369 5.369 17 C -0.051 4.051 18 C -0.029 4.029 19 O -0.309 6.309 20 C -0.012 4.012 21 C 0.029 3.971 22 H 0.106 0.894 23 C -0.131 4.131 24 C 0.012 3.988 25 H 0.102 0.898 26 C -0.187 4.187 27 C -0.189 4.189 28 C -0.039 4.039 29 O -0.310 6.310 30 H 0.089 0.911 31 H 0.233 0.767 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.246 0.754 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.068 0.932 38 H 0.150 0.850 39 H 0.059 0.941 40 H 0.145 0.855 41 H 0.068 0.932 42 H 0.119 0.881 43 H 0.079 0.921 44 H 0.107 0.893 45 H 0.089 0.911 46 H 0.112 0.888 47 H 0.115 0.885 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.665 -25.222 1.794 25.294 hybrid contribution -0.250 1.473 -0.024 1.494 sum 0.414 -23.749 1.770 23.819 Atomic orbital electron populations 1.69674 1.07011 1.29712 1.49217 1.26134 0.96540 1.02697 0.95776 0.84929 0.77723 0.76233 0.79120 1.19460 1.19662 1.19469 1.19699 0.92974 0.83507 1.50461 0.89525 1.41828 1.09593 1.04579 1.63391 1.20405 0.88121 0.85890 0.83555 1.90461 1.15169 1.87556 1.58079 1.20579 0.90965 0.83038 1.04020 1.45003 1.11035 1.03426 1.79257 1.15895 0.84898 0.80514 0.77754 1.90859 1.15378 1.83253 1.59447 1.47404 1.06201 1.05619 1.77634 1.22647 0.79263 1.02019 1.01179 1.23157 1.01598 0.82001 0.96175 1.87946 1.23174 1.25633 1.94157 1.23158 0.79755 1.02789 0.95470 1.21950 0.95396 0.79901 0.99814 0.89376 1.22049 0.93268 0.93923 1.03909 1.23237 0.93954 0.94421 0.87169 0.89809 1.22922 0.95319 0.99672 1.00821 1.22927 0.98122 0.98737 0.99126 1.23584 0.88306 0.89685 1.02278 1.89163 1.55241 1.47719 1.38909 0.91055 0.76697 0.88923 0.89137 0.75363 0.88768 0.89109 0.93244 0.84976 0.94095 0.85477 0.93151 0.88106 0.92134 0.89333 0.91106 0.88828 0.88541 0.90802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.58 13.05 21.66 0.28 -48.30 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 3 Si 1.00 41.56 29.55 68.60 2.03 43.59 16 4 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.34 -18.48 9.68 84.04 0.81 -17.67 16 8 H 0.09 4.98 7.16 -2.91 -0.02 4.95 16 9 N -0.56 -27.97 5.29 -306.98 -1.62 -29.59 16 10 C 0.43 19.95 7.85 87.66 0.69 20.64 16 11 O -0.62 -32.02 15.24 -3.09 -0.05 -32.06 16 12 C 0.14 5.25 6.16 85.63 0.53 5.77 16 13 N -0.73 -24.57 5.45 -482.28 -2.63 -27.20 16 14 C 0.71 22.91 8.13 179.05 1.46 24.36 16 15 O -0.61 -21.97 12.10 -3.99 -0.05 -22.02 16 16 N -0.63 -16.48 3.01 -810.59 -2.44 -18.92 16 17 C 0.07 1.50 6.66 86.49 0.58 2.08 16 18 C 0.05 0.92 7.00 72.22 0.51 1.42 16 19 O -0.39 -8.69 10.74 -148.98 -1.60 -10.29 16 20 C 0.07 1.44 5.07 72.08 0.37 1.80 16 21 C 0.13 3.05 3.22 44.96 0.14 3.20 16 22 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 23 C -0.09 -2.29 2.94 30.59 0.09 -2.20 16 24 C 0.07 1.29 3.03 31.10 0.09 1.38 16 25 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 26 C -0.15 -2.47 6.63 31.61 0.21 -2.26 16 27 C -0.15 -1.92 7.09 31.61 0.22 -1.70 16 28 C 0.04 0.50 7.63 72.48 0.55 1.05 16 29 O -0.39 -7.51 8.42 -148.98 -1.25 -8.76 16 30 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 31 H 0.40 19.22 7.90 -92.71 -0.73 18.48 16 32 H 0.09 3.27 8.14 -2.38 -0.02 3.25 16 33 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 34 H 0.41 13.53 4.95 -92.71 -0.46 13.07 16 35 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.09 1.97 5.66 -2.39 -0.01 1.96 16 37 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.13 2.55 6.18 -2.38 -0.01 2.53 16 41 H 0.05 1.52 7.45 -2.39 -0.02 1.50 16 42 H 0.10 2.85 6.09 -2.39 -0.01 2.84 16 43 H 0.06 1.23 7.87 -2.39 -0.02 1.22 16 44 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -66.36 378.17 -0.81 -67.17 By element: Atomic # 1 Polarization: 48.79 SS G_CDS: -0.19 Total: 48.60 kcal Atomic # 6 Polarization: 31.07 SS G_CDS: 6.72 Total: 37.79 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -6.41 Total: -124.01 kcal Atomic # 8 Polarization: -70.18 SS G_CDS: -2.95 Total: -73.13 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -66.36 -0.81 -67.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001682374393.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.526 kcal (2) G-P(sol) polarization free energy of solvation -66.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds