Wall clock time and date at job start Sat Apr 11 2020 06:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86809 * 120.00018 * 2 1 4 4 H 1.48504 * 109.47176 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46901 * 299.99475 * 3 2 1 6 6 H 1.48498 * 109.47172 * 59.99468 * 3 2 1 7 7 C 1.38949 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99815 * 180.02562 * 7 2 1 9 9 N 1.37093 * 119.99722 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00129 * 179.97438 * 9 7 2 11 11 O 1.21301 * 119.99443 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00149 * 179.97438 * 10 9 7 13 13 N 1.46504 * 109.46918 * 180.02562 * 12 10 9 14 14 C 1.34778 * 119.99853 * 180.02562 * 13 12 10 15 15 O 1.21585 * 119.99679 * 354.91111 * 14 13 12 16 16 N 1.34777 * 120.00106 * 174.91603 * 14 13 12 17 17 C 1.47157 * 120.97839 * 354.37534 * 16 14 13 18 18 C 1.53298 * 108.38059 * 129.74050 * 17 16 14 19 19 O 1.42955 * 109.22365 * 52.30446 * 18 17 16 20 20 C 1.42969 * 114.16577 * 297.41528 * 19 18 17 21 21 C 1.47149 * 120.98298 * 174.65935 * 16 14 13 22 22 H 1.08997 * 109.67934 * 110.49819 * 21 16 14 23 23 C 1.52998 * 109.68043 * 349.97969 * 21 16 14 24 24 C 1.53000 * 109.47118 * 182.55104 * 23 21 16 25 25 H 1.09000 * 110.27372 * 59.39853 * 24 23 21 26 26 C 1.54940 * 110.31097 * 181.59423 * 24 23 21 27 27 C 1.55306 * 100.94430 * 155.36369 * 26 24 23 28 28 C 1.54388 * 102.25121 * 325.86628 * 27 26 24 29 29 O 1.43238 * 107.58582 * 21.35746 * 28 27 26 30 30 H 0.97004 * 119.99947 * 0.02562 * 1 2 3 31 31 H 0.97003 * 120.00372 * 359.97438 * 9 7 2 32 32 H 1.08992 * 109.47091 * 60.00438 * 12 10 9 33 33 H 1.08997 * 109.47040 * 300.00096 * 12 10 9 34 34 H 0.96996 * 120.00096 * 359.97438 * 13 12 10 35 35 H 1.08996 * 109.67870 * 249.46185 * 17 16 14 36 36 H 1.08998 * 109.68350 * 10.01856 * 17 16 14 37 37 H 1.08992 * 109.51460 * 292.37383 * 18 17 16 38 38 H 1.09004 * 109.55100 * 172.24776 * 18 17 16 39 39 H 1.09003 * 109.51216 * 302.65929 * 20 19 18 40 40 H 1.09000 * 109.51590 * 182.50793 * 20 19 18 41 41 H 1.08996 * 109.47300 * 302.55492 * 23 21 16 42 42 H 1.09003 * 109.46654 * 62.55793 * 23 21 16 43 43 H 1.09005 * 111.12976 * 273.28247 * 26 24 23 44 44 H 1.08997 * 111.12538 * 37.44321 * 26 24 23 45 45 H 1.09004 * 110.85278 * 207.68154 * 27 26 24 46 46 H 1.08993 * 110.85081 * 84.05728 * 27 26 24 47 47 H 1.09002 * 109.83098 * 261.84610 * 28 27 26 48 48 H 1.09002 * 109.90605 * 140.91157 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8893 2.3966 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2032 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2437 -4.8629 0.0011 13 7 2.1958 -5.9764 0.0016 14 6 1.7465 -7.2471 0.0017 15 8 0.5550 -7.4706 0.0947 16 7 2.6180 -8.2700 -0.1013 17 6 4.0496 -8.0246 -0.3378 18 6 4.8539 -8.8218 0.6954 19 8 4.4311 -10.1871 0.6694 20 6 3.0613 -10.3827 1.0293 21 6 2.1652 -9.6654 0.0132 22 1 2.2422 -10.1571 -0.9565 23 6 0.7130 -9.6981 0.4937 24 6 0.2673 -11.1508 0.6720 25 1 0.9037 -11.6545 1.3996 26 6 -1.2147 -11.2076 1.1202 27 6 -1.6198 -12.6214 0.6211 28 6 -0.7888 -12.7627 -0.6724 29 8 0.3053 -11.8422 -0.5866 30 1 -0.4850 0.8401 -0.0004 31 1 0.3533 -2.3906 0.0005 32 1 0.6168 -4.9209 -0.8886 33 1 0.6174 -4.9204 0.8913 34 1 3.1494 -5.7992 0.0012 35 1 4.3169 -8.3513 -1.3427 36 1 4.2628 -6.9613 -0.2280 37 1 4.6833 -8.4067 1.6887 38 1 5.9154 -8.7647 0.4544 39 1 2.8842 -9.9732 2.0239 40 1 2.8330 -11.4485 1.0277 41 1 0.6335 -9.1741 1.4461 42 1 0.0754 -9.2104 -0.2438 43 1 -1.3004 -11.1343 2.2044 44 1 -1.8038 -10.4336 0.6283 45 1 -2.6869 -12.6649 0.4031 46 1 -1.3397 -13.3842 1.3474 47 1 -1.4071 -12.5225 -1.5373 48 1 -0.4094 -13.7808 -0.7604 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001682374396.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:40 Heat of formation + Delta-G solvation = -135.029971 kcal Electronic energy + Delta-G solvation = -30665.874837 eV Core-core repulsion = 26335.798234 eV Total energy + Delta-G solvation = -4330.076603 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.87533 -39.51965 -38.72196 -38.02387 -35.05778 -34.70444 -34.03072 -32.94987 -32.31077 -31.38732 -30.06063 -28.41067 -26.95472 -26.00607 -24.53287 -23.43198 -22.32873 -21.84592 -20.96425 -19.76690 -19.47765 -18.23203 -17.81068 -17.22590 -16.67408 -16.21013 -15.99013 -15.89700 -15.56123 -15.30118 -15.08392 -14.86927 -14.56861 -14.48275 -14.38111 -13.91947 -13.71264 -13.46958 -13.34392 -13.07708 -12.70294 -12.39719 -12.15272 -12.01695 -11.94661 -11.84398 -11.65121 -11.57568 -11.29125 -11.16022 -11.08001 -11.05327 -10.70646 -10.42506 -10.34340 -10.32837 -9.85877 -9.66634 -9.08114 -8.86565 -8.64929 -8.40089 -8.11946 -6.53308 -3.95285 2.56977 3.08741 3.21211 3.27739 3.30286 3.58380 3.63168 3.72834 3.90888 4.12436 4.27368 4.51691 4.55001 4.63553 4.79118 4.85141 4.85578 4.88846 4.94106 5.03187 5.05681 5.15614 5.24226 5.28318 5.38731 5.42324 5.47056 5.54015 5.55456 5.58862 5.65037 5.69683 5.87437 5.89114 5.98170 6.05682 6.12945 6.25712 6.56614 6.78058 6.85346 6.90442 6.99263 7.44496 7.90773 8.10970 8.43121 8.74436 9.02939 9.37592 9.85254 10.63639 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016914 B = 0.002317 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.058046 B =12083.111262 C =13465.503308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.599 6.599 12 C 0.128 3.872 13 N -0.725 5.725 14 C 0.711 3.289 15 O -0.587 6.587 16 N -0.633 5.633 17 C 0.075 3.925 18 C 0.047 3.953 19 O -0.379 6.379 20 C 0.049 3.951 21 C 0.138 3.862 22 H 0.085 0.915 23 C -0.109 4.109 24 C 0.072 3.928 25 H 0.066 0.934 26 C -0.149 4.149 27 C -0.157 4.157 28 C 0.051 3.949 29 O -0.378 6.378 30 H 0.274 0.726 31 H 0.396 0.604 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.405 0.595 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.057 0.943 38 H 0.107 0.893 39 H 0.054 0.946 40 H 0.105 0.895 41 H 0.082 0.918 42 H 0.114 0.886 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.363 -23.656 2.094 23.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.486 6.486 12 C 0.000 4.000 13 N -0.385 5.385 14 C 0.412 3.588 15 O -0.467 6.467 16 N -0.372 5.372 17 C -0.049 4.049 18 C -0.031 4.031 19 O -0.297 6.297 20 C -0.028 4.028 21 C 0.034 3.966 22 H 0.103 0.897 23 C -0.146 4.146 24 C 0.014 3.986 25 H 0.084 0.916 26 C -0.187 4.187 27 C -0.195 4.195 28 C -0.026 4.026 29 O -0.298 6.298 30 H 0.084 0.916 31 H 0.230 0.770 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.244 0.756 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.075 0.925 38 H 0.125 0.875 39 H 0.072 0.928 40 H 0.123 0.877 41 H 0.100 0.900 42 H 0.132 0.868 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.093 0.907 47 H 0.085 0.915 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.431 -23.703 1.938 23.786 hybrid contribution -0.104 1.172 0.213 1.196 sum 0.327 -22.531 2.151 22.636 Atomic orbital electron populations 1.69620 1.06017 1.28434 1.49375 1.25330 0.95670 0.99948 0.96807 0.85760 0.79678 0.80823 0.77838 1.19135 1.20599 1.20612 1.19772 0.93474 0.81972 1.48146 0.87632 1.41796 1.09498 1.04465 1.62601 1.19765 0.88288 0.85018 0.85521 1.90487 1.13778 1.86883 1.57445 1.20786 0.91250 0.84887 1.03119 1.45055 1.11263 1.03434 1.78729 1.15787 0.84791 0.80367 0.77806 1.90870 1.14235 1.82948 1.58627 1.47317 1.07249 1.05296 1.77382 1.22372 0.80747 1.01537 1.00228 1.22990 0.99205 0.82415 0.98454 1.87959 1.26488 1.25362 1.89914 1.23185 0.81476 1.01301 0.96868 1.21705 0.94761 0.80102 1.00041 0.89678 1.22322 0.94859 0.92643 1.04820 1.23282 0.95997 0.93691 0.85648 0.91642 1.23264 0.96175 0.97098 1.02114 1.23124 1.01108 0.97666 0.97576 1.23080 0.88361 0.93414 0.97723 1.88433 1.48400 1.55678 1.37265 0.91627 0.77018 0.90069 0.89946 0.75557 0.90349 0.88791 0.92456 0.87501 0.92762 0.87686 0.90001 0.86837 0.90022 0.89778 0.90120 0.90733 0.91482 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.74 13.05 55.50 0.72 -23.02 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.40 29.55 -169.99 -5.02 15.37 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 7 C -0.30 -8.20 9.68 -14.94 -0.14 -8.34 16 8 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.55 -13.49 5.29 -10.96 -0.06 -13.55 16 10 C 0.43 9.73 7.85 -10.98 -0.09 9.64 16 11 O -0.60 -15.13 15.24 5.54 0.08 -15.05 16 12 C 0.13 2.35 6.16 -5.19 -0.03 2.32 16 13 N -0.73 -12.23 5.43 -66.42 -0.36 -12.59 16 14 C 0.71 11.52 8.13 -86.92 -0.71 10.81 16 15 O -0.59 -10.56 12.11 5.29 0.06 -10.50 16 16 N -0.63 -8.45 3.02 -170.43 -0.51 -8.97 16 17 C 0.07 0.83 6.65 -3.53 -0.02 0.80 16 18 C 0.05 0.46 6.98 37.31 0.26 0.72 16 19 O -0.38 -4.30 10.74 -35.23 -0.38 -4.67 16 20 C 0.05 0.51 5.65 37.31 0.21 0.72 16 21 C 0.14 1.66 3.08 -67.42 -0.21 1.46 16 22 H 0.09 1.10 7.86 -51.93 -0.41 0.70 16 23 C -0.11 -1.33 2.98 -26.73 -0.08 -1.41 16 24 C 0.07 0.71 3.08 -25.71 -0.08 0.63 16 25 H 0.07 0.57 6.63 -51.93 -0.34 0.22 16 26 C -0.15 -1.27 6.57 -24.48 -0.16 -1.43 16 27 C -0.16 -1.10 7.02 -24.78 -0.17 -1.27 16 28 C 0.05 0.43 7.79 37.89 0.30 0.72 16 29 O -0.38 -4.23 10.58 -35.23 -0.37 -4.60 16 30 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.40 9.37 7.90 -40.82 -0.32 9.05 16 32 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 33 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 34 H 0.40 6.71 4.98 -40.82 -0.20 6.51 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 1.04 5.65 -51.93 -0.29 0.75 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.11 0.95 6.89 -51.93 -0.36 0.59 16 41 H 0.08 1.07 7.43 -51.93 -0.39 0.68 16 42 H 0.11 1.71 6.12 -51.93 -0.32 1.40 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.81 8.06 -51.93 -0.42 0.39 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 379.99 15.07 5.73 5.73 Total: -1.00 -31.40 379.99 -8.34 -39.75 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: -7.21 Total: 16.17 kcal Atomic # 6 Polarization: 16.95 SS G_CDS: -1.02 Total: 15.93 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -0.21 Total: -58.13 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -0.60 Total: -34.82 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.40 -8.34 -39.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001682374396.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.283 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds