Wall clock time and date at job start Sat Apr 11 2020 06:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50703 * 120.00117 * 2 1 4 4 C 1.53001 * 109.47137 * 124.99893 * 3 2 1 5 5 O 1.42901 * 109.47084 * 180.02562 * 4 3 2 6 6 C 1.42895 * 113.99948 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47147 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99507 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00020 * 180.02562 * 7 6 5 10 10 C 1.46496 * 119.99544 * 180.02562 * 9 7 6 11 11 H 1.08996 * 110.27809 * 35.63634 * 10 9 7 12 12 C 1.54000 * 110.31004 * 273.54415 * 10 9 7 13 13 N 1.47902 * 107.05686 * 239.86419 * 12 10 9 14 14 C 1.46903 * 110.99655 * 145.84488 * 13 12 10 15 15 C 1.50705 * 109.46788 * 189.99807 * 14 13 12 16 16 O 1.21296 * 120.00171 * 359.97438 * 15 14 13 17 17 N 1.34777 * 119.99593 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99534 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00280 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99681 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00434 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99917 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46943 * 59.99886 * 22 20 18 24 24 H 1.48502 * 109.46914 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46699 * 299.99940 * 22 20 18 26 26 C 1.48531 * 105.82531 * 25.32921 * 13 12 10 27 27 C 1.54602 * 110.30899 * 157.83205 * 10 9 7 28 28 H 1.08999 * 110.72495 * 215.31539 * 27 10 9 29 29 O 1.42900 * 110.72031 * 338.59602 * 27 10 9 30 30 H 1.08000 * 120.00165 * 0.02562 * 1 2 3 31 31 H 1.08007 * 119.99874 * 179.97438 * 1 2 3 32 32 H 1.08000 * 120.00165 * 179.97438 * 2 1 3 33 33 H 1.08991 * 109.46847 * 4.99967 * 3 2 1 34 34 H 1.08999 * 109.46703 * 244.99900 * 3 2 1 35 35 H 1.08995 * 109.47456 * 59.99577 * 4 3 2 36 36 H 1.09003 * 109.47124 * 300.00093 * 4 3 2 37 37 H 1.09001 * 109.46798 * 60.00190 * 6 5 4 38 38 H 1.09000 * 109.47736 * 300.00432 * 6 5 4 39 39 H 0.96994 * 119.99756 * 0.02562 * 9 7 6 40 40 H 1.08999 * 109.91477 * 359.21261 * 12 10 9 41 41 H 1.09000 * 109.92053 * 120.50987 * 12 10 9 42 42 H 1.08995 * 109.47259 * 309.99380 * 14 13 12 43 43 H 1.08996 * 109.47550 * 69.99652 * 14 13 12 44 44 H 0.97001 * 120.00414 * 359.97438 * 17 15 14 45 45 H 0.96994 * 120.00600 * 180.02562 * 21 20 18 46 46 H 1.09000 * 110.66744 * 79.22369 * 26 13 12 47 47 H 1.08996 * 110.67204 * 202.19273 * 26 13 12 48 48 H 0.96707 * 114.00061 * 179.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 8 3.7491 2.5709 1.1820 6 6 4.6877 2.7001 2.2517 7 6 5.3798 4.0353 2.1542 8 8 5.0967 4.8009 1.2572 9 7 6.3133 4.3784 3.0637 10 6 6.9856 5.6766 2.9692 11 1 6.2919 6.4358 2.6081 12 6 8.2059 5.5797 2.0348 13 7 9.3952 5.9433 2.8353 14 6 10.5719 5.1740 2.4090 15 6 11.6932 5.3845 3.3936 16 8 11.5286 6.1048 4.3555 17 7 12.8790 4.7722 3.2052 18 6 13.8994 4.9641 4.1007 19 1 13.7530 5.6061 4.9567 20 6 15.1217 4.3325 3.9068 21 7 15.3001 3.5517 2.8650 22 14 16.5122 4.5944 5.1265 23 1 16.0823 4.1384 6.4727 24 1 17.7010 3.8151 4.6966 25 1 16.8585 6.0376 5.1798 26 6 9.0427 5.6389 4.2457 27 6 7.5618 6.0838 4.3448 28 1 7.4918 7.1621 4.4884 29 8 6.8941 5.3875 5.3989 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9354 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3586 2.1316 0.0896 34 1 2.6212 1.4025 -0.9314 35 1 3.7399 0.5066 1.0922 36 1 2.4772 1.2356 2.1130 37 1 5.4272 1.9022 2.1845 38 1 4.1639 2.6307 3.2051 39 1 6.5399 3.7659 3.7809 40 1 8.3072 4.5609 1.6609 41 1 8.0921 6.2741 1.2023 42 1 10.3182 4.1148 2.3682 43 1 10.8876 5.5103 1.4214 44 1 13.0106 4.1959 2.4362 45 1 16.1532 3.1105 2.7298 46 1 9.1377 4.5714 4.4442 47 1 9.6662 6.2133 4.9307 48 1 7.2187 5.6072 6.2830 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688834096.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:44 Heat of formation + Delta-G solvation = -128.199615 kcal Electronic energy + Delta-G solvation = -29283.564119 eV Core-core repulsion = 24953.783702 eV Total energy + Delta-G solvation = -4329.780417 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.39385 -39.19751 -38.17500 -37.63585 -35.80711 -35.35845 -34.33478 -33.82089 -31.39379 -30.78929 -29.96023 -28.34327 -27.40956 -26.17609 -24.22434 -23.38531 -21.48297 -21.28377 -20.42099 -20.20317 -19.30633 -17.96039 -17.75871 -17.33117 -16.98301 -16.79862 -16.20167 -15.72484 -15.60646 -15.26724 -15.03340 -14.84786 -14.73246 -14.33158 -14.11859 -13.82895 -13.54769 -13.53287 -13.32504 -12.93354 -12.81973 -12.71199 -12.20273 -12.09617 -11.90409 -11.60955 -11.60079 -11.58096 -11.50546 -11.33998 -11.07870 -10.77525 -10.47906 -10.27701 -10.06530 -10.01199 -9.91890 -9.79686 -9.53643 -9.24242 -8.47987 -8.09195 -7.97610 -6.47769 -3.89199 1.78301 2.46991 2.57113 3.15247 3.22019 3.25716 3.56270 3.81594 3.88008 4.09135 4.34224 4.49860 4.51757 4.58922 4.65221 4.68333 4.76218 4.81634 4.90598 4.94414 5.02030 5.07146 5.14292 5.19567 5.29609 5.39825 5.44030 5.53531 5.61205 5.66198 5.77100 5.86149 5.92239 6.05927 6.17236 6.17333 6.28113 6.29723 6.48620 6.69927 7.03477 7.14119 7.38637 7.48702 7.49478 7.98619 8.10481 8.54000 9.10829 9.46352 9.97317 10.69566 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016433 B = 0.001830 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.510301 B =15298.078361 C =16262.658744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.154 4.154 3 C -0.093 4.093 4 C 0.065 3.935 5 O -0.364 6.364 6 C 0.046 3.954 7 C 0.514 3.486 8 O -0.522 6.522 9 N -0.708 5.708 10 C 0.147 3.853 11 H 0.101 0.899 12 C 0.023 3.977 13 N -0.490 5.490 14 C 0.037 3.963 15 C 0.441 3.559 16 O -0.583 6.583 17 N -0.559 5.559 18 C -0.302 4.302 19 H 0.103 0.897 20 C 0.024 3.976 21 N -0.900 5.900 22 Si 0.932 3.068 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.008 3.992 27 C 0.089 3.911 28 H 0.084 0.916 29 O -0.564 6.564 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.407 0.593 40 H 0.052 0.948 41 H 0.090 0.910 42 H 0.049 0.951 43 H 0.093 0.907 44 H 0.393 0.607 45 H 0.273 0.727 46 H 0.045 0.955 47 H 0.124 0.876 48 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.478 -6.430 -1.273 24.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.172 4.172 3 C -0.131 4.131 4 C -0.012 4.012 5 O -0.282 6.282 6 C -0.034 4.034 7 C 0.299 3.701 8 O -0.397 6.397 9 N -0.363 5.363 10 C 0.042 3.958 11 H 0.119 0.881 12 C -0.106 4.106 13 N -0.215 5.215 14 C -0.094 4.094 15 C 0.227 3.773 16 O -0.468 6.468 17 N -0.195 5.195 18 C -0.432 4.432 19 H 0.121 0.879 20 C -0.178 4.178 21 N -0.540 5.540 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.198 1.198 26 C -0.120 4.120 27 C 0.029 3.971 28 H 0.102 0.898 29 O -0.370 6.370 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.129 0.871 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.243 0.757 40 H 0.071 0.929 41 H 0.108 0.892 42 H 0.067 0.933 43 H 0.111 0.889 44 H 0.226 0.774 45 H 0.083 0.917 46 H 0.063 0.937 47 H 0.142 0.858 48 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -23.840 -5.071 -2.061 24.460 hybrid contribution 1.262 -1.585 1.052 2.283 sum -22.578 -6.656 -1.009 23.560 Atomic orbital electron populations 1.23919 0.95896 1.02104 1.00526 1.22804 0.96028 0.97979 1.00423 1.20641 0.97929 0.95936 0.98560 1.22504 0.94036 0.86042 0.98616 1.87990 1.54363 1.37461 1.48405 1.22168 0.93242 0.95941 0.92038 1.20223 0.79619 0.88208 0.82098 1.90731 1.63337 1.52200 1.33426 1.45689 1.40294 1.19600 1.30672 1.21840 0.93930 0.85722 0.94349 0.88071 1.23457 0.89267 1.00822 0.97095 1.64596 1.01780 1.52573 1.02555 1.22117 0.91484 0.95947 0.99867 1.19668 0.84162 0.85272 0.88248 1.90417 1.81832 1.41847 1.32752 1.41845 1.10308 1.42189 1.25131 1.19654 0.90307 1.27442 1.05756 0.87892 1.25279 0.98821 0.96190 0.97513 1.69600 1.26123 1.30314 1.28013 0.85908 0.79635 0.78553 0.80058 1.19917 1.20940 1.19822 1.24190 0.94671 1.00583 0.92549 1.23118 0.91467 0.96377 0.86142 0.89781 1.86314 1.63293 1.69371 1.17992 0.88376 0.88271 0.87126 0.90462 0.89851 0.92906 0.92989 0.90218 0.90160 0.75723 0.92928 0.89171 0.93307 0.88932 0.77406 0.91722 0.93686 0.85836 0.76554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.05 14.32 29.02 0.42 -0.64 16 2 C -0.15 -0.94 9.52 -36.02 -0.34 -1.28 16 3 C -0.09 -0.69 6.03 -27.88 -0.17 -0.86 16 4 C 0.06 0.50 5.92 37.16 0.22 0.72 16 5 O -0.36 -4.12 9.88 -55.14 -0.54 -4.67 16 6 C 0.05 0.43 6.42 36.01 0.23 0.66 16 7 C 0.51 6.46 7.90 -10.98 -0.09 6.37 16 8 O -0.52 -8.75 16.20 -14.35 -0.23 -8.98 16 9 N -0.71 -7.98 4.66 -52.49 -0.24 -8.22 16 10 C 0.15 1.85 3.25 -66.57 -0.22 1.63 16 11 H 0.10 1.34 7.64 -51.93 -0.40 0.94 16 12 C 0.02 0.31 6.49 -2.75 -0.02 0.30 16 13 N -0.49 -7.95 5.26 -231.89 -1.22 -9.17 16 14 C 0.04 0.66 5.52 -4.97 -0.03 0.63 16 15 C 0.44 10.01 7.49 -10.98 -0.08 9.93 16 16 O -0.58 -14.71 13.09 5.54 0.07 -14.64 16 17 N -0.56 -13.78 5.29 -10.96 -0.06 -13.84 16 18 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 19 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 20 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 21 N -0.90 -24.01 13.05 55.50 0.72 -23.28 16 22 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 C 0.01 0.12 5.03 -1.90 -0.01 0.11 16 27 C 0.09 1.07 4.35 -24.87 -0.11 0.96 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 O -0.56 -5.71 12.05 -35.23 -0.42 -6.14 16 30 H 0.10 0.53 7.84 -52.49 -0.41 0.11 16 31 H 0.10 0.44 8.06 -52.48 -0.42 0.02 16 32 H 0.11 0.56 8.06 -52.49 -0.42 0.14 16 33 H 0.08 0.60 7.79 -51.93 -0.40 0.20 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.41 3.97 7.76 -40.82 -0.32 3.65 16 40 H 0.05 0.73 7.35 -51.93 -0.38 0.34 16 41 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.05 0.79 7.81 -51.93 -0.41 0.39 16 43 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 44 H 0.39 9.34 7.90 -40.82 -0.32 9.01 16 45 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.04 0.71 8.02 -51.93 -0.42 0.29 16 47 H 0.12 2.24 5.96 -51.93 -0.31 1.93 16 48 H 0.39 2.63 9.12 45.56 0.42 3.04 16 LS Contribution 401.68 15.07 6.05 6.05 Total: -1.00 -33.55 401.68 -8.02 -41.56 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -6.69 Total: 15.06 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -0.43 Total: 10.73 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.80 Total: -54.51 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -1.13 Total: -34.43 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.55 -8.02 -41.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688834096.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.635 kcal (2) G-P(sol) polarization free energy of solvation -33.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds