Wall clock time and date at job start Sat Apr 11 2020 06:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50703 * 120.00117 * 2 1 4 4 C 1.53001 * 109.47137 * 124.99893 * 3 2 1 5 5 O 1.42901 * 109.47084 * 180.02562 * 4 3 2 6 6 C 1.42895 * 113.99948 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47147 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99507 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00020 * 180.02562 * 7 6 5 10 10 C 1.46496 * 119.99544 * 180.02562 * 9 7 6 11 11 H 1.08996 * 110.27809 * 35.63634 * 10 9 7 12 12 C 1.54000 * 110.31004 * 273.54415 * 10 9 7 13 13 N 1.47902 * 107.05686 * 239.86419 * 12 10 9 14 14 C 1.46903 * 110.99655 * 145.84488 * 13 12 10 15 15 C 1.50705 * 109.46788 * 189.99807 * 14 13 12 16 16 O 1.21296 * 120.00171 * 359.97438 * 15 14 13 17 17 N 1.34777 * 119.99593 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99534 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00280 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99681 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00434 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99917 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46943 * 59.99886 * 22 20 18 24 24 H 1.48502 * 109.46914 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46699 * 299.99940 * 22 20 18 26 26 C 1.48531 * 105.82531 * 25.32921 * 13 12 10 27 27 C 1.54602 * 110.30899 * 157.83205 * 10 9 7 28 28 H 1.08999 * 110.72495 * 215.31539 * 27 10 9 29 29 O 1.42900 * 110.72031 * 338.59602 * 27 10 9 30 30 H 1.08000 * 120.00165 * 0.02562 * 1 2 3 31 31 H 1.08007 * 119.99874 * 179.97438 * 1 2 3 32 32 H 1.08000 * 120.00165 * 179.97438 * 2 1 3 33 33 H 1.08991 * 109.46847 * 4.99967 * 3 2 1 34 34 H 1.08999 * 109.46703 * 244.99900 * 3 2 1 35 35 H 1.08995 * 109.47456 * 59.99577 * 4 3 2 36 36 H 1.09003 * 109.47124 * 300.00093 * 4 3 2 37 37 H 1.09001 * 109.46798 * 60.00190 * 6 5 4 38 38 H 1.09000 * 109.47736 * 300.00432 * 6 5 4 39 39 H 0.96994 * 119.99756 * 0.02562 * 9 7 6 40 40 H 1.08999 * 109.91477 * 359.21261 * 12 10 9 41 41 H 1.09000 * 109.92053 * 120.50987 * 12 10 9 42 42 H 1.08995 * 109.47259 * 309.99380 * 14 13 12 43 43 H 1.08996 * 109.47550 * 69.99652 * 14 13 12 44 44 H 0.97001 * 120.00414 * 359.97438 * 17 15 14 45 45 H 0.96994 * 120.00600 * 180.02562 * 21 20 18 46 46 H 1.09000 * 110.66744 * 79.22369 * 26 13 12 47 47 H 1.08996 * 110.67204 * 202.19273 * 26 13 12 48 48 H 0.96707 * 114.00061 * 179.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 8 3.7491 2.5709 1.1820 6 6 4.6877 2.7001 2.2517 7 6 5.3798 4.0353 2.1542 8 8 5.0967 4.8009 1.2572 9 7 6.3133 4.3784 3.0637 10 6 6.9856 5.6766 2.9692 11 1 6.2919 6.4358 2.6081 12 6 8.2059 5.5797 2.0348 13 7 9.3952 5.9433 2.8353 14 6 10.5719 5.1740 2.4090 15 6 11.6932 5.3845 3.3936 16 8 11.5286 6.1048 4.3555 17 7 12.8790 4.7722 3.2052 18 6 13.8994 4.9641 4.1007 19 1 13.7530 5.6061 4.9567 20 6 15.1217 4.3325 3.9068 21 7 15.3001 3.5517 2.8650 22 14 16.5122 4.5944 5.1265 23 1 16.0823 4.1384 6.4727 24 1 17.7010 3.8151 4.6966 25 1 16.8585 6.0376 5.1798 26 6 9.0427 5.6389 4.2457 27 6 7.5618 6.0838 4.3448 28 1 7.4918 7.1621 4.4884 29 8 6.8941 5.3875 5.3989 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9354 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3586 2.1316 0.0896 34 1 2.6212 1.4025 -0.9314 35 1 3.7399 0.5066 1.0922 36 1 2.4772 1.2356 2.1130 37 1 5.4272 1.9022 2.1845 38 1 4.1639 2.6307 3.2051 39 1 6.5399 3.7659 3.7809 40 1 8.3072 4.5609 1.6609 41 1 8.0921 6.2741 1.2023 42 1 10.3182 4.1148 2.3682 43 1 10.8876 5.5103 1.4214 44 1 13.0106 4.1959 2.4362 45 1 16.1532 3.1105 2.7298 46 1 9.1377 4.5714 4.4442 47 1 9.6662 6.2133 4.9307 48 1 7.2187 5.6072 6.2830 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688834096.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:43 Heat of formation + Delta-G solvation = -156.282149 kcal Electronic energy + Delta-G solvation = -29284.781869 eV Core-core repulsion = 24953.783702 eV Total energy + Delta-G solvation = -4330.998167 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.47165 -40.46211 -39.45781 -38.61774 -36.89147 -35.97168 -35.87175 -35.19416 -33.32648 -31.87199 -30.71191 -29.37328 -28.51611 -27.52237 -25.90158 -23.94812 -22.72535 -22.24624 -21.44303 -21.07255 -20.68770 -19.87743 -18.69425 -18.29222 -17.83957 -17.65921 -17.48240 -16.78674 -16.65694 -16.45502 -16.31114 -16.11604 -15.83369 -15.75397 -15.34492 -14.97983 -14.85099 -14.40427 -14.22317 -14.03170 -13.96617 -13.73904 -13.47854 -13.43047 -13.25816 -12.97105 -12.76365 -12.57496 -12.47996 -12.42836 -12.15658 -12.13771 -11.98042 -11.91746 -11.47493 -11.00814 -10.90588 -10.71141 -10.26915 -10.26865 -10.19322 -10.01607 -9.39747 -8.46881 -5.95843 1.32928 1.39730 1.42509 1.52545 1.53262 1.75381 2.01796 2.27722 2.63673 2.99659 3.11078 3.19825 3.31833 3.55058 3.69670 3.77156 4.00111 4.10040 4.14401 4.18213 4.20012 4.24787 4.26525 4.30635 4.35606 4.45294 4.45989 4.49191 4.50605 4.67259 4.85742 4.87104 4.89983 5.02778 5.09917 5.14167 5.34252 5.41083 5.73171 5.75182 5.84158 5.85165 6.03593 6.06312 6.51615 6.58669 6.76571 7.11510 7.19138 7.53720 8.08388 8.70115 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016433 B = 0.001830 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.510301 B =15298.078361 C =16262.658744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.160 4.160 3 C -0.094 4.094 4 C 0.062 3.938 5 O -0.398 6.398 6 C 0.048 3.952 7 C 0.510 3.490 8 O -0.570 6.570 9 N -0.697 5.697 10 C 0.149 3.851 11 H 0.096 0.904 12 C 0.029 3.971 13 N -0.504 5.504 14 C 0.048 3.952 15 C 0.441 3.559 16 O -0.610 6.610 17 N -0.571 5.571 18 C -0.333 4.333 19 H 0.083 0.917 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.993 3.007 23 H -0.270 1.270 24 H -0.273 1.273 25 H -0.272 1.272 26 C 0.013 3.987 27 C 0.108 3.892 28 H 0.092 0.908 29 O -0.562 6.562 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.417 0.583 40 H 0.055 0.945 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.107 0.893 44 H 0.395 0.605 45 H 0.277 0.723 46 H 0.039 0.961 47 H 0.093 0.907 48 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.319 -7.737 -0.685 25.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.178 4.178 3 C -0.131 4.131 4 C -0.013 4.013 5 O -0.317 6.317 6 C -0.031 4.031 7 C 0.297 3.703 8 O -0.449 6.449 9 N -0.351 5.351 10 C 0.043 3.957 11 H 0.114 0.886 12 C -0.100 4.100 13 N -0.229 5.229 14 C -0.083 4.083 15 C 0.228 3.772 16 O -0.497 6.497 17 N -0.208 5.208 18 C -0.463 4.463 19 H 0.101 0.899 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.817 3.183 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.198 1.198 26 C -0.115 4.115 27 C 0.048 3.952 28 H 0.110 0.890 29 O -0.370 6.370 30 H 0.115 0.885 31 H 0.131 0.869 32 H 0.141 0.859 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.254 0.746 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.086 0.914 43 H 0.125 0.875 44 H 0.229 0.771 45 H 0.087 0.913 46 H 0.057 0.943 47 H 0.111 0.889 48 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -24.691 -6.402 -1.444 25.548 hybrid contribution 1.442 -1.158 0.887 2.051 sum -23.249 -7.560 -0.557 24.453 Atomic orbital electron populations 1.24083 0.95908 1.02742 0.99731 1.22827 0.96190 0.97711 1.01108 1.20635 0.97796 0.96458 0.98244 1.22660 0.94262 0.85238 0.99188 1.87949 1.55103 1.39270 1.49412 1.22279 0.93733 0.94347 0.92772 1.20879 0.79227 0.88995 0.81185 1.90710 1.64894 1.53906 1.35381 1.45611 1.39681 1.19194 1.30651 1.21718 0.93351 0.86387 0.94268 0.88557 1.23426 0.88602 1.00964 0.97036 1.64556 1.02237 1.52748 1.03390 1.22002 0.90261 0.97382 0.98685 1.20552 0.84552 0.83679 0.88400 1.90418 1.82462 1.42629 1.34169 1.41912 1.10709 1.43013 1.25117 1.19651 0.91882 1.28457 1.06278 0.89932 1.26045 1.00510 0.95542 0.99104 1.69667 1.26843 1.30583 1.29010 0.84984 0.76916 0.78445 0.77970 1.19523 1.19727 1.19755 1.24018 0.96462 0.99621 0.91433 1.22833 0.89060 0.96758 0.86575 0.89044 1.86286 1.62811 1.69164 1.18691 0.88535 0.86916 0.85905 0.91479 0.90832 0.91399 0.91684 0.87671 0.87440 0.74561 0.92643 0.89009 0.91442 0.87469 0.77114 0.91319 0.94279 0.88939 0.74645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.85 14.32 67.79 0.97 -0.88 16 2 C -0.16 -1.73 9.52 25.66 0.24 -1.49 16 3 C -0.09 -1.33 6.03 29.85 0.18 -1.15 16 4 C 0.06 0.87 5.92 71.98 0.43 1.29 16 5 O -0.40 -8.54 9.88 -129.94 -1.28 -9.82 16 6 C 0.05 0.78 6.42 71.24 0.46 1.24 16 7 C 0.51 12.12 7.90 87.66 0.69 12.81 16 8 O -0.57 -18.97 16.20 16.01 0.26 -18.71 16 9 N -0.70 -14.41 4.66 -438.36 -2.04 -16.45 16 10 C 0.15 3.53 3.25 45.88 0.15 3.68 16 11 H 0.10 2.45 7.64 -2.39 -0.02 2.44 16 12 C 0.03 0.75 6.49 86.45 0.56 1.31 16 13 N -0.50 -15.96 5.26 -887.56 -4.67 -20.63 16 14 C 0.05 1.66 5.52 85.56 0.47 2.13 16 15 C 0.44 20.20 7.49 87.66 0.66 20.86 16 16 O -0.61 -31.45 13.09 -3.08 -0.04 -31.49 16 17 N -0.57 -28.55 5.29 -306.97 -1.62 -30.17 16 18 C -0.33 -18.39 9.68 84.04 0.81 -17.58 16 19 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 20 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 21 N -0.92 -48.91 13.05 21.66 0.28 -48.63 16 22 Si 0.99 41.92 29.55 68.60 2.03 43.94 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 C 0.01 0.38 5.03 86.65 0.44 0.82 16 27 C 0.11 2.43 4.35 31.80 0.14 2.57 16 28 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 29 O -0.56 -10.14 12.05 -148.98 -1.80 -11.93 16 30 H 0.10 0.96 7.84 -2.91 -0.02 0.93 16 31 H 0.11 0.79 8.06 -2.91 -0.02 0.77 16 32 H 0.12 1.01 8.06 -2.91 -0.02 0.98 16 33 H 0.07 1.05 7.79 -2.39 -0.02 1.03 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.42 7.06 7.76 -92.71 -0.72 6.34 16 40 H 0.06 1.44 7.35 -2.39 -0.02 1.42 16 41 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.07 2.09 7.81 -2.39 -0.02 2.07 16 43 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 44 H 0.40 18.99 7.90 -92.71 -0.73 18.25 16 45 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 46 H 0.04 1.20 8.02 -2.39 -0.02 1.19 16 47 H 0.09 3.41 5.96 -2.39 -0.01 3.40 16 48 H 0.40 4.60 9.12 -74.05 -0.68 3.93 16 Total: -1.00 -73.28 401.68 -3.35 -76.63 By element: Atomic # 1 Polarization: 42.94 SS G_CDS: -1.13 Total: 41.81 kcal Atomic # 6 Polarization: 18.79 SS G_CDS: 6.66 Total: 25.45 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -8.05 Total: -115.89 kcal Atomic # 8 Polarization: -69.09 SS G_CDS: -2.86 Total: -71.95 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -73.28 -3.35 -76.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688834096.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.655 kcal (2) G-P(sol) polarization free energy of solvation -73.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds