Wall clock time and date at job start Sat Apr 11 2020 06:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50707 * 109.47205 * 2 1 4 4 N 1.30833 * 125.95762 * 265.26869 * 3 2 1 5 5 C 1.33245 * 109.82319 * 180.19227 * 4 3 2 6 6 C 1.50693 * 125.52390 * 179.85443 * 5 4 3 7 7 H 1.08997 * 109.47481 * 344.71713 * 6 5 4 8 8 C 1.52999 * 109.47023 * 104.72294 * 6 5 4 9 9 N 1.46902 * 109.47275 * 224.71948 * 6 5 4 10 10 C 1.46894 * 111.00385 * 154.94228 * 9 6 5 11 11 H 1.08998 * 109.47102 * 348.17894 * 10 9 6 12 12 C 1.53003 * 109.47012 * 108.17994 * 10 9 6 13 13 C 1.53000 * 109.47321 * 228.17805 * 10 9 6 14 14 N 1.46503 * 109.47157 * 55.00135 * 13 10 9 15 15 C 1.34766 * 120.00134 * 179.97438 * 14 13 10 16 16 O 1.21285 * 119.99912 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00033 * 179.97438 * 15 14 13 18 18 S 1.81005 * 109.47169 * 180.02562 * 17 15 14 19 19 C 1.76191 * 99.99947 * 180.02562 * 18 17 15 20 20 H 1.08006 * 120.00070 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00312 * 180.02562 * 19 18 17 22 22 N 1.31632 * 119.99606 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00386 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47211 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47124 * 119.99761 * 23 21 19 26 26 H 1.48500 * 109.46871 * 239.99687 * 23 21 19 27 27 N 1.30708 * 108.94727 * 359.59307 * 5 4 3 28 28 N 1.34428 * 125.95883 * 85.01957 * 3 2 1 29 29 H 0.97000 * 126.82615 * 359.93983 * 28 3 2 30 30 H 1.08996 * 109.47073 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47556 * 300.00330 * 1 2 3 32 32 H 1.09001 * 109.46501 * 60.00123 * 1 2 3 33 33 H 1.08995 * 109.47359 * 240.00167 * 2 1 3 34 34 H 1.08999 * 109.47003 * 119.99940 * 2 1 3 35 35 H 1.09002 * 109.47000 * 302.62334 * 8 6 5 36 36 H 1.08998 * 109.47687 * 62.62969 * 8 6 5 37 37 H 1.09002 * 109.46997 * 182.62995 * 8 6 5 38 38 H 1.00906 * 110.99753 * 30.98901 * 9 6 5 39 39 H 1.09000 * 109.46890 * 305.46587 * 12 10 9 40 40 H 1.09000 * 109.47304 * 65.47259 * 12 10 9 41 41 H 1.09006 * 109.46843 * 185.47370 * 12 10 9 42 42 H 1.09003 * 109.47232 * 175.00130 * 13 10 9 43 43 H 1.09002 * 109.47296 * 294.99571 * 13 10 9 44 44 H 0.96995 * 119.99464 * 359.97438 * 14 13 10 45 45 H 1.08995 * 109.47062 * 299.99643 * 17 15 14 46 46 H 1.08993 * 109.47136 * 60.00353 * 17 15 14 47 47 H 0.97002 * 120.00016 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.3708 2.1160 -1.0554 5 6 2.7726 3.3316 -0.6861 6 6 3.2435 4.4187 -1.6173 7 1 3.4651 3.9894 -2.5944 8 6 2.1477 5.4767 -1.7616 9 7 4.4562 5.0413 -1.0697 10 6 5.2670 5.6429 -2.1368 11 1 4.8951 5.3115 -3.1063 12 6 5.1750 7.1676 -2.0492 13 6 6.7255 5.2098 -1.9748 14 7 6.7995 3.7471 -1.9390 15 6 7.9928 3.1359 -1.8021 16 8 9.0054 3.7969 -1.7080 17 6 8.0689 1.6313 -1.7647 18 16 9.7943 1.1190 -1.5732 19 6 9.5941 -0.6315 -1.5609 20 1 8.6086 -1.0630 -1.6560 21 6 10.7028 -1.4559 -1.4279 22 7 11.9038 -0.9300 -1.3114 23 14 10.4907 -3.3118 -1.4155 24 1 9.0512 -3.6464 -1.5612 25 1 11.2538 -3.9048 -2.5430 26 1 10.9983 -3.8594 -0.1319 27 7 2.6868 3.4300 0.6145 28 7 2.2064 2.1966 1.0840 29 1 2.0341 1.9530 2.0070 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.2338 5.0060 -2.1239 36 1 1.9590 5.9389 -0.7927 37 1 2.4698 6.2388 -2.4712 38 1 4.9958 4.3753 -0.5374 39 1 4.1279 7.4700 -2.0671 40 1 5.6354 7.5067 -1.1212 41 1 5.6961 7.6123 -2.8971 42 1 7.3107 5.5828 -2.8154 43 1 7.1243 5.6167 -1.0455 44 1 5.9896 3.2186 -2.0139 45 1 7.4842 1.2588 -0.9236 46 1 7.6696 1.2241 -2.6936 47 1 12.6787 -1.5061 -1.2188 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690555308.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:59 Heat of formation + Delta-G solvation = 37.140450 kcal Electronic energy + Delta-G solvation = -27160.365059 eV Core-core repulsion = 23312.799948 eV Total energy + Delta-G solvation = -3847.565111 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.50397 -39.49401 -37.90933 -35.15473 -34.12721 -32.94383 -32.43401 -32.02813 -30.02062 -29.35639 -28.97943 -25.81916 -25.30572 -24.83791 -24.18146 -21.31540 -20.80945 -20.40419 -20.29661 -18.23283 -17.88371 -16.71993 -16.29976 -16.17377 -15.73680 -15.43360 -15.17983 -14.81675 -14.81226 -14.62952 -14.54912 -13.96721 -13.33125 -13.15810 -12.97573 -12.89269 -12.86304 -12.67170 -12.59736 -12.49868 -12.24285 -12.04582 -11.83457 -11.64819 -11.60627 -11.49071 -11.07934 -11.02978 -11.00557 -10.75992 -10.38039 -10.32776 -9.81464 -9.79400 -9.42743 -9.08580 -8.93558 -8.79929 -8.23752 -6.50350 -6.22308 -3.92659 1.28290 2.30248 2.51187 3.01237 3.07973 3.20585 3.26956 3.31507 3.39508 3.69049 3.85690 4.18158 4.19555 4.36390 4.51522 4.66701 4.71443 4.88375 4.93109 5.04521 5.08584 5.12855 5.14491 5.18938 5.30809 5.36092 5.45588 5.47521 5.51996 5.59341 5.64172 5.72402 5.73375 5.85250 5.87958 5.91224 5.97990 6.09324 6.12662 6.13463 6.55412 6.65350 6.75915 7.02419 7.59069 7.62624 7.80386 8.34904 8.58259 9.23035 10.85219 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008282 B = 0.003094 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.203077 B = 9046.351476 C =12049.534893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.050 4.050 3 C 0.288 3.712 4 N -0.533 5.533 5 C 0.217 3.783 6 C 0.180 3.820 7 H 0.074 0.926 8 C -0.134 4.134 9 N -0.674 5.674 10 C 0.073 3.927 11 H 0.067 0.933 12 C -0.135 4.135 13 C 0.107 3.893 14 N -0.744 5.744 15 C 0.533 3.467 16 O -0.514 6.514 17 C -0.153 4.153 18 S -0.058 6.058 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.279 1.279 26 H -0.280 1.280 27 N -0.287 5.287 28 N -0.482 5.482 29 H 0.440 0.560 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.351 0.649 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.393 0.607 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.296 8.318 1.369 27.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.090 4.090 3 C 0.009 3.991 4 N -0.262 5.262 5 C -0.066 4.066 6 C 0.068 3.932 7 H 0.092 0.908 8 C -0.193 4.193 9 N -0.309 5.309 10 C -0.037 4.037 11 H 0.085 0.915 12 C -0.194 4.194 13 C -0.018 4.018 14 N -0.399 5.399 15 C 0.319 3.681 16 O -0.388 6.388 17 C -0.304 4.304 18 S 0.168 5.832 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.206 1.206 27 N -0.115 5.115 28 N -0.200 5.200 29 H 0.286 0.714 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.124 0.876 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.172 0.828 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.227 0.773 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -24.502 10.552 1.725 26.734 hybrid contribution -1.476 -3.398 0.206 3.710 sum -25.979 7.155 1.932 27.015 Atomic orbital electron populations 1.21749 0.93145 1.03049 1.02662 1.20237 0.96850 0.86292 1.05595 1.24395 0.95638 0.96169 0.82888 1.70367 1.21933 1.04408 1.29541 1.24210 0.98748 0.93223 0.90435 1.19924 0.91713 0.88724 0.92872 0.90811 1.21814 0.96593 0.97850 1.03053 1.60632 1.07571 1.38422 1.24305 1.21961 0.91278 0.96770 0.93672 0.91520 1.21774 1.02422 0.93020 1.02161 1.21744 0.96044 0.80650 1.03361 1.46083 1.09421 1.06935 1.77488 1.20283 0.82652 0.89977 0.75147 1.90707 1.34281 1.66544 1.47235 1.23527 1.08465 0.93531 1.04846 1.85390 0.97152 1.05123 1.95519 1.22906 0.96199 0.91109 1.58105 0.90932 1.24995 0.94444 0.99610 0.94555 1.70030 0.98172 1.35668 1.46388 0.86116 0.78356 0.83104 0.77918 1.19631 1.20513 1.20569 1.78111 1.20900 1.00232 1.12284 1.48086 1.51160 1.10227 1.10499 0.71425 0.90862 0.92641 0.91683 0.87579 0.89119 0.92381 0.91326 0.91367 0.82758 0.91771 0.91839 0.92303 0.90627 0.90680 0.77332 0.89501 0.89252 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.89 37.16 0.37 -0.29 16 2 C -0.05 -0.28 6.56 -27.88 -0.18 -0.47 16 3 C 0.29 2.66 7.49 -155.69 -1.17 1.49 16 4 N -0.53 -6.22 11.19 -8.16 -0.09 -6.31 16 5 C 0.22 2.51 6.64 -156.86 -1.04 1.47 16 6 C 0.18 1.75 3.08 -68.87 -0.21 1.54 16 7 H 0.07 0.70 7.38 -51.93 -0.38 0.32 16 8 C -0.13 -1.12 9.31 37.16 0.35 -0.77 16 9 N -0.67 -6.78 5.99 -100.96 -0.60 -7.39 16 10 C 0.07 0.67 2.80 -67.71 -0.19 0.48 16 11 H 0.07 0.56 7.16 -51.93 -0.37 0.19 16 12 C -0.14 -1.07 9.52 37.16 0.35 -0.72 16 13 C 0.11 1.28 5.13 -4.04 -0.02 1.26 16 14 N -0.74 -10.50 4.91 -60.29 -0.30 -10.79 16 15 C 0.53 10.31 7.85 -10.99 -0.09 10.22 16 16 O -0.51 -11.94 15.86 5.55 0.09 -11.85 16 17 C -0.15 -3.20 6.16 36.01 0.22 -2.98 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 19 C -0.53 -15.40 9.50 30.94 0.29 -15.11 16 20 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 23 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 N -0.29 -3.38 12.78 32.42 0.41 -2.96 16 28 N -0.48 -4.30 7.45 32.62 0.24 -4.05 16 29 H 0.44 2.46 8.96 -182.33 -1.63 0.83 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.48 7.02 -51.93 -0.36 0.11 16 38 H 0.35 4.15 6.73 -39.29 -0.26 3.88 16 39 H 0.06 0.47 6.97 -51.93 -0.36 0.11 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.39 4.84 7.83 -40.82 -0.32 4.52 16 45 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 46 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 47 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 406.30 15.07 6.12 6.12 Total: -1.00 -36.56 406.30 -10.78 -47.34 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -8.74 Total: 4.71 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -1.41 Total: -1.87 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.40 Total: -57.08 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.56 -10.78 -47.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690555308.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.482 kcal (2) G-P(sol) polarization free energy of solvation -36.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds