Wall clock time and date at job start Sat Apr 11 2020 06:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50707 * 109.47205 * 2 1 4 4 N 1.30833 * 125.95762 * 265.26869 * 3 2 1 5 5 C 1.33245 * 109.82319 * 180.19227 * 4 3 2 6 6 C 1.50693 * 125.52390 * 179.85443 * 5 4 3 7 7 H 1.08997 * 109.47481 * 344.71713 * 6 5 4 8 8 C 1.52999 * 109.47023 * 104.72294 * 6 5 4 9 9 N 1.46902 * 109.47275 * 224.71948 * 6 5 4 10 10 C 1.46894 * 111.00385 * 154.94228 * 9 6 5 11 11 H 1.08998 * 109.47102 * 348.17894 * 10 9 6 12 12 C 1.53003 * 109.47012 * 108.17994 * 10 9 6 13 13 C 1.53000 * 109.47321 * 228.17805 * 10 9 6 14 14 N 1.46503 * 109.47157 * 55.00135 * 13 10 9 15 15 C 1.34766 * 120.00134 * 179.97438 * 14 13 10 16 16 O 1.21285 * 119.99912 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00033 * 179.97438 * 15 14 13 18 18 S 1.81005 * 109.47169 * 180.02562 * 17 15 14 19 19 C 1.76191 * 99.99947 * 180.02562 * 18 17 15 20 20 H 1.08006 * 120.00070 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00312 * 180.02562 * 19 18 17 22 22 N 1.31632 * 119.99606 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00386 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47211 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47124 * 119.99761 * 23 21 19 26 26 H 1.48500 * 109.46871 * 239.99687 * 23 21 19 27 27 N 1.30708 * 108.94727 * 359.59307 * 5 4 3 28 28 N 1.34428 * 125.95883 * 85.01957 * 3 2 1 29 29 H 0.97000 * 126.82615 * 359.93983 * 28 3 2 30 30 H 1.08996 * 109.47073 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47556 * 300.00330 * 1 2 3 32 32 H 1.09001 * 109.46501 * 60.00123 * 1 2 3 33 33 H 1.08995 * 109.47359 * 240.00167 * 2 1 3 34 34 H 1.08999 * 109.47003 * 119.99940 * 2 1 3 35 35 H 1.09002 * 109.47000 * 302.62334 * 8 6 5 36 36 H 1.08998 * 109.47687 * 62.62969 * 8 6 5 37 37 H 1.09002 * 109.46997 * 182.62995 * 8 6 5 38 38 H 1.00906 * 110.99753 * 30.98901 * 9 6 5 39 39 H 1.09000 * 109.46890 * 305.46587 * 12 10 9 40 40 H 1.09000 * 109.47304 * 65.47259 * 12 10 9 41 41 H 1.09006 * 109.46843 * 185.47370 * 12 10 9 42 42 H 1.09003 * 109.47232 * 175.00130 * 13 10 9 43 43 H 1.09002 * 109.47296 * 294.99571 * 13 10 9 44 44 H 0.96995 * 119.99464 * 359.97438 * 14 13 10 45 45 H 1.08995 * 109.47062 * 299.99643 * 17 15 14 46 46 H 1.08993 * 109.47136 * 60.00353 * 17 15 14 47 47 H 0.97002 * 120.00016 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.3708 2.1160 -1.0554 5 6 2.7726 3.3316 -0.6861 6 6 3.2435 4.4187 -1.6173 7 1 3.4651 3.9894 -2.5944 8 6 2.1477 5.4767 -1.7616 9 7 4.4562 5.0413 -1.0697 10 6 5.2670 5.6429 -2.1368 11 1 4.8951 5.3115 -3.1063 12 6 5.1750 7.1676 -2.0492 13 6 6.7255 5.2098 -1.9748 14 7 6.7995 3.7471 -1.9390 15 6 7.9928 3.1359 -1.8021 16 8 9.0054 3.7969 -1.7080 17 6 8.0689 1.6313 -1.7647 18 16 9.7943 1.1190 -1.5732 19 6 9.5941 -0.6315 -1.5609 20 1 8.6086 -1.0630 -1.6560 21 6 10.7028 -1.4559 -1.4279 22 7 11.9038 -0.9300 -1.3114 23 14 10.4907 -3.3118 -1.4155 24 1 9.0512 -3.6464 -1.5612 25 1 11.2538 -3.9048 -2.5430 26 1 10.9983 -3.8594 -0.1319 27 7 2.6868 3.4300 0.6145 28 7 2.2064 2.1966 1.0840 29 1 2.0341 1.9530 2.0070 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.2338 5.0060 -2.1239 36 1 1.9590 5.9389 -0.7927 37 1 2.4698 6.2388 -2.4712 38 1 4.9958 4.3753 -0.5374 39 1 4.1279 7.4700 -2.0671 40 1 5.6354 7.5067 -1.1212 41 1 5.6961 7.6123 -2.8971 42 1 7.3107 5.5828 -2.8154 43 1 7.1243 5.6167 -1.0455 44 1 5.9896 3.2186 -2.0139 45 1 7.4842 1.2588 -0.9236 46 1 7.6696 1.2241 -2.6936 47 1 12.6787 -1.5061 -1.2188 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690555308.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:58 Heat of formation + Delta-G solvation = 9.842870 kcal Electronic energy + Delta-G solvation = -27161.548771 eV Core-core repulsion = 23312.799948 eV Total energy + Delta-G solvation = -3848.748823 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.24958 -40.86247 -38.92346 -36.04933 -34.91091 -34.60798 -33.85822 -32.87773 -31.03849 -30.56630 -29.68999 -27.75784 -26.64280 -25.39692 -24.87006 -22.05902 -21.85200 -21.55415 -21.08913 -19.89059 -18.91479 -18.03271 -17.60343 -17.14134 -16.90446 -16.67227 -16.46971 -16.10604 -15.92539 -15.71765 -15.24199 -15.09223 -14.78109 -14.50526 -14.26632 -13.75776 -13.64963 -13.52771 -13.37747 -13.24106 -13.19043 -13.13963 -13.00992 -12.92478 -12.61952 -12.50670 -12.35564 -12.28170 -11.99361 -11.80356 -11.70634 -11.17913 -11.14347 -11.12465 -11.05194 -10.55402 -10.32262 -10.25198 -9.57634 -8.70326 -8.36977 -6.15750 0.54885 1.22905 1.40273 1.44055 1.51680 1.56159 1.66498 1.74040 2.17518 2.24925 2.69553 2.97237 3.09126 3.27578 3.54342 3.62959 3.79068 3.88417 4.10513 4.13054 4.20053 4.26866 4.30506 4.35881 4.41382 4.43252 4.57463 4.64740 4.75827 4.80073 4.85239 4.95965 5.02404 5.05666 5.07223 5.20275 5.25947 5.27690 5.30918 5.37689 5.39433 5.51316 5.93678 6.12627 6.16144 6.17583 6.30091 7.04141 7.05017 7.10882 8.72598 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008282 B = 0.003094 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.203077 B = 9046.351476 C =12049.534893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.048 4.048 3 C 0.289 3.711 4 N -0.563 5.563 5 C 0.208 3.792 6 C 0.179 3.821 7 H 0.079 0.921 8 C -0.126 4.126 9 N -0.675 5.675 10 C 0.084 3.916 11 H 0.083 0.917 12 C -0.132 4.132 13 C 0.107 3.893 14 N -0.718 5.718 15 C 0.536 3.464 16 O -0.559 6.559 17 C -0.130 4.130 18 S -0.145 6.145 19 C -0.548 4.548 20 H 0.081 0.919 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 1.000 3.000 24 H -0.257 1.257 25 H -0.273 1.273 26 H -0.273 1.273 27 N -0.316 5.316 28 N -0.476 5.476 29 H 0.453 0.547 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.340 0.660 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.406 0.594 45 H 0.102 0.898 46 H 0.107 0.893 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.761 7.223 1.071 29.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 C 0.010 3.990 4 N -0.293 5.293 5 C -0.075 4.075 6 C 0.068 3.932 7 H 0.096 0.904 8 C -0.185 4.185 9 N -0.309 5.309 10 C -0.026 4.026 11 H 0.101 0.899 12 C -0.190 4.190 13 C -0.017 4.017 14 N -0.372 5.372 15 C 0.322 3.678 16 O -0.436 6.436 17 C -0.281 4.281 18 S 0.082 5.918 19 C -0.695 4.695 20 H 0.099 0.901 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.821 3.179 24 H -0.180 1.180 25 H -0.198 1.198 26 H -0.198 1.198 27 N -0.145 5.145 28 N -0.195 5.195 29 H 0.301 0.699 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.122 0.878 34 H 0.131 0.869 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.160 0.840 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.241 0.759 45 H 0.120 0.880 46 H 0.126 0.874 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -27.038 9.476 1.436 28.686 hybrid contribution -0.820 -2.992 0.320 3.119 sum -27.858 6.484 1.757 28.657 Atomic orbital electron populations 1.21720 0.92107 1.04035 1.02198 1.20428 0.97582 0.84237 1.06553 1.25031 0.94403 0.97107 0.82411 1.70368 1.23234 1.04830 1.30847 1.24514 0.98712 0.93649 0.90620 1.20030 0.91791 0.88809 0.92614 0.90367 1.21752 0.96226 0.97714 1.02826 1.60697 1.07589 1.38141 1.24494 1.21962 0.88928 0.97575 0.94147 0.89949 1.21760 1.03193 0.91768 1.02269 1.21909 0.98276 0.78752 1.02798 1.45827 1.08142 1.08094 1.75151 1.20010 0.83463 0.89204 0.75138 1.90697 1.36103 1.67057 1.49778 1.23354 1.03469 0.94967 1.06304 1.85549 1.03923 1.06352 1.95929 1.23221 0.96846 0.91145 1.58324 0.90086 1.26144 0.93860 1.05465 0.93634 1.70188 0.99268 1.37902 1.47347 0.84893 0.79109 0.75681 0.78192 1.18011 1.19785 1.19811 1.78026 1.22006 1.01815 1.12666 1.48038 1.50687 1.09489 1.11281 0.69887 0.89129 0.92126 0.93117 0.87846 0.86876 0.92255 0.92467 0.89734 0.83987 0.90726 0.92758 0.91061 0.90592 0.91865 0.75862 0.88007 0.87440 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.89 71.98 0.71 -0.29 16 2 C -0.05 -0.46 6.56 29.85 0.20 -0.26 16 3 C 0.29 4.97 7.49 138.23 1.04 6.00 16 4 N -0.56 -12.60 11.19 -179.73 -2.01 -14.61 16 5 C 0.21 4.64 6.64 138.63 0.92 5.56 16 6 C 0.18 3.25 3.08 44.17 0.14 3.38 16 7 H 0.08 1.33 7.38 -2.39 -0.02 1.32 16 8 C -0.13 -1.91 9.31 71.98 0.67 -1.24 16 9 N -0.67 -12.68 5.99 -473.33 -2.84 -15.52 16 10 C 0.08 1.37 2.80 44.92 0.13 1.50 16 11 H 0.08 1.15 7.16 -2.39 -0.02 1.13 16 12 C -0.13 -1.82 9.52 71.98 0.69 -1.13 16 13 C 0.11 2.46 5.13 86.38 0.44 2.90 16 14 N -0.72 -19.47 4.91 -463.05 -2.28 -21.75 16 15 C 0.54 20.62 7.85 87.66 0.69 21.30 16 16 O -0.56 -26.48 15.86 -3.04 -0.05 -26.53 16 17 C -0.13 -5.37 6.16 71.24 0.44 -4.94 16 18 S -0.14 -8.17 20.57 -56.49 -1.16 -9.33 16 19 C -0.55 -31.62 9.50 67.95 0.65 -30.98 16 20 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 21 C 0.01 0.79 5.49 84.86 0.47 1.25 16 22 N -0.91 -56.16 13.22 21.65 0.29 -55.88 16 23 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 24 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 27 N -0.32 -7.24 12.78 -51.34 -0.66 -7.90 16 28 N -0.48 -7.98 7.45 -50.70 -0.38 -8.36 16 29 H 0.45 4.51 8.96 -213.10 -1.91 2.60 16 30 H 0.09 0.34 8.14 -2.39 -0.02 0.33 16 31 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 0.97 7.02 -2.39 -0.02 0.96 16 38 H 0.34 7.72 6.73 -89.69 -0.60 7.11 16 39 H 0.07 0.91 6.97 -2.39 -0.02 0.89 16 40 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.41 9.27 7.83 -92.71 -0.73 8.54 16 45 H 0.10 3.91 8.14 -2.40 -0.02 3.89 16 46 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 47 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -81.13 406.30 -2.12 -83.26 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: -2.23 Total: 27.92 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 7.16 Total: 3.08 kcal Atomic # 7 Polarization: -116.14 SS G_CDS: -7.87 Total: -124.01 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.05 Total: -26.53 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.17 SS G_CDS: -1.16 Total: -9.33 kcal Total: -81.13 -2.12 -83.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690555308.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.102 kcal (2) G-P(sol) polarization free energy of solvation -81.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds