Wall clock time and date at job start Sat Apr 11 2020 06:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.47159 * 2 1 4 4 N 1.30830 * 125.96516 * 265.00327 * 3 2 1 5 5 C 1.33239 * 109.82788 * 179.97438 * 4 3 2 6 6 C 1.50704 * 125.52549 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.46935 * 15.00167 * 6 5 4 8 8 C 1.52999 * 109.47092 * 255.00620 * 6 5 4 9 9 N 1.46901 * 109.47204 * 135.00171 * 6 5 4 10 10 C 1.46898 * 110.99974 * 226.54725 * 9 6 5 11 11 H 1.09000 * 109.47269 * 33.93449 * 10 9 6 12 12 C 1.53002 * 109.46717 * 273.93434 * 10 9 6 13 13 C 1.52997 * 109.47182 * 153.93778 * 10 9 6 14 14 N 1.46502 * 109.47065 * 304.99899 * 13 10 9 15 15 C 1.34777 * 120.00069 * 180.02562 * 14 13 10 16 16 O 1.21274 * 119.99800 * 359.72006 * 15 14 13 17 17 C 1.50694 * 119.99951 * 179.97438 * 15 14 13 18 18 S 1.80997 * 109.47399 * 179.97438 * 17 15 14 19 19 C 1.76193 * 100.00468 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99943 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00176 * 180.02562 * 19 18 17 22 22 N 1.31633 * 119.99837 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00129 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47066 * 90.00094 * 23 21 19 25 25 H 1.48500 * 109.47229 * 210.00515 * 23 21 19 26 26 H 1.48508 * 109.46794 * 330.00002 * 23 21 19 27 27 N 1.30711 * 108.94800 * 0.26602 * 5 4 3 28 28 N 1.34438 * 125.95573 * 84.97455 * 3 2 1 29 29 H 0.96997 * 126.82205 * 0.02653 * 28 3 2 30 30 H 1.08999 * 109.47188 * 299.99581 * 1 2 3 31 31 H 1.09002 * 109.47587 * 60.00084 * 1 2 3 32 32 H 1.09001 * 109.47193 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47188 * 240.00419 * 2 1 3 34 34 H 1.09005 * 109.47311 * 120.00363 * 2 1 3 35 35 H 1.08996 * 109.47925 * 64.67614 * 8 6 5 36 36 H 1.09002 * 109.47494 * 184.68135 * 8 6 5 37 37 H 1.09005 * 109.46918 * 304.67583 * 8 6 5 38 38 H 1.00903 * 110.99793 * 350.49898 * 9 6 5 39 39 H 1.09006 * 109.46733 * 182.75691 * 12 10 9 40 40 H 1.08993 * 109.47583 * 302.76078 * 12 10 9 41 41 H 1.09003 * 109.47002 * 62.76522 * 12 10 9 42 42 H 1.09001 * 109.47138 * 184.99830 * 13 10 9 43 43 H 1.08997 * 109.47215 * 64.99528 * 13 10 9 44 44 H 0.97003 * 119.99621 * 359.97438 * 14 13 10 45 45 H 1.09000 * 109.47407 * 300.00156 * 17 15 14 46 46 H 1.09001 * 109.47206 * 59.99748 * 17 15 14 47 47 H 0.97008 * 119.99783 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3754 2.1145 -1.0549 5 6 2.7711 3.3321 -0.6860 6 6 3.2422 4.4193 -1.6172 7 1 2.9653 4.1664 -2.6407 8 6 4.7633 4.5517 -1.5184 9 7 2.6143 5.6929 -1.2406 10 6 2.0836 6.3876 -2.4211 11 1 1.7218 5.6545 -3.1421 12 6 3.1918 7.2271 -3.0597 13 6 0.9305 7.3007 -2.0000 14 7 -0.0769 6.5158 -1.2822 15 6 -1.1898 7.1146 -0.8139 16 8 -1.3549 8.3042 -0.9823 17 6 -2.2263 6.3070 -0.0760 18 16 -3.5905 7.3872 0.4223 19 6 -4.6242 6.2176 1.2395 20 1 -4.3223 5.1827 1.3045 21 6 -5.8272 6.6259 1.7986 22 7 -6.5997 5.7520 2.4086 23 14 -6.3499 8.4158 1.6855 24 1 -7.1412 8.6229 0.4461 25 1 -7.1794 8.7648 2.8667 26 1 -5.1443 9.2824 1.6538 27 7 2.6903 3.4287 0.6150 28 7 2.2055 2.1968 1.0841 29 1 2.0336 1.9530 2.0070 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 5.2319 3.6352 -1.8768 36 1 5.0953 5.3920 -2.1282 37 1 5.0464 4.7224 -0.4797 38 1 1.8924 5.5498 -0.5503 39 1 2.7860 7.7807 -3.9066 40 1 3.5873 7.9272 -2.3239 41 1 3.9917 6.5715 -3.4040 42 1 0.4793 7.7481 -2.8856 43 1 1.3097 8.0879 -1.3483 44 1 0.0567 5.5649 -1.1446 45 1 -2.6053 5.5198 -0.7278 46 1 -1.7754 5.8596 0.8097 47 1 -7.4403 6.0375 2.7997 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690555309.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:02 Heat of formation + Delta-G solvation = 38.129126 kcal Electronic energy + Delta-G solvation = -27255.989623 eV Core-core repulsion = 23408.467384 eV Total energy + Delta-G solvation = -3847.522239 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.55504 -39.56442 -37.97636 -35.21500 -34.18173 -32.97837 -32.45554 -32.07164 -30.04139 -29.48845 -29.04745 -25.89349 -25.48653 -24.83584 -24.13646 -21.34237 -20.79855 -20.60708 -20.29292 -18.33015 -17.89280 -16.70053 -16.31649 -16.18744 -16.04103 -15.60634 -15.16148 -14.97505 -14.89067 -14.54620 -14.45389 -13.84641 -13.51520 -13.30636 -13.02205 -12.90527 -12.81785 -12.79158 -12.62810 -12.59856 -12.30266 -12.02143 -11.94478 -11.66336 -11.56607 -11.53030 -11.27928 -11.05862 -11.01811 -10.61080 -10.41338 -10.37064 -9.87038 -9.84167 -9.55103 -9.04561 -8.99088 -8.87485 -8.51698 -6.93080 -6.30792 -4.02303 1.23737 2.26330 2.46908 2.74126 2.95683 3.28001 3.32790 3.39140 3.49982 3.62183 3.78740 4.15276 4.32015 4.34766 4.49236 4.69184 4.70860 4.71718 4.85695 4.94918 5.05945 5.08429 5.08799 5.11472 5.25774 5.35203 5.36008 5.44824 5.47684 5.51458 5.65166 5.69428 5.74445 5.76743 5.80413 5.86585 5.97375 5.98061 6.04070 6.10399 6.46217 6.61004 6.72584 6.98975 7.51613 7.75091 7.92282 8.39066 8.45653 9.15543 10.78469 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009551 B = 0.003009 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.865474 B = 9303.473008 C =11801.129052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.047 4.047 3 C 0.288 3.712 4 N -0.534 5.534 5 C 0.208 3.792 6 C 0.180 3.820 7 H 0.084 0.916 8 C -0.133 4.133 9 N -0.673 5.673 10 C 0.071 3.929 11 H 0.056 0.944 12 C -0.139 4.139 13 C 0.117 3.883 14 N -0.740 5.740 15 C 0.533 3.467 16 O -0.515 6.515 17 C -0.124 4.124 18 S -0.138 6.138 19 C -0.522 4.522 20 H 0.087 0.913 21 C 0.096 3.904 22 N -0.881 5.881 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 N -0.293 5.293 28 N -0.478 5.478 29 H 0.442 0.558 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.351 0.649 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.393 0.607 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.171 -11.167 -8.168 26.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.087 4.087 3 C 0.009 3.991 4 N -0.263 5.263 5 C -0.076 4.076 6 C 0.068 3.932 7 H 0.102 0.898 8 C -0.192 4.192 9 N -0.309 5.309 10 C -0.039 4.039 11 H 0.074 0.926 12 C -0.197 4.197 13 C -0.007 4.007 14 N -0.395 5.395 15 C 0.318 3.682 16 O -0.389 6.389 17 C -0.275 4.275 18 S 0.088 5.912 19 C -0.669 4.669 20 H 0.105 0.895 21 C -0.113 4.113 22 N -0.518 5.518 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 N -0.122 5.122 28 N -0.196 5.196 29 H 0.288 0.712 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.173 0.827 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.226 0.774 45 H 0.113 0.887 46 H 0.113 0.887 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 23.506 -8.288 -8.332 26.281 hybrid contribution -1.188 -2.235 0.949 2.703 sum 22.319 -10.523 -7.383 25.756 Atomic orbital electron populations 1.21780 0.92692 1.03270 1.03265 1.20230 0.97244 0.86096 1.05121 1.24446 0.95438 0.96296 0.82913 1.70370 1.21941 1.04523 1.29514 1.24587 0.98339 0.94025 0.90663 1.19995 0.96045 0.82705 0.94470 0.89770 1.21824 0.92327 1.01744 1.03269 1.60706 1.37295 1.20400 1.12475 1.21991 0.94111 0.96158 0.91625 0.92632 1.21793 0.97647 0.99879 1.00366 1.21560 0.87316 0.94355 0.97469 1.46022 1.21459 1.12262 1.59797 1.20228 0.81526 0.88130 0.78272 1.90701 1.76853 1.15133 1.56258 1.23273 0.98881 1.02793 1.02539 1.84781 1.18174 1.15340 1.72908 1.22310 1.06748 0.96690 1.41186 0.89512 1.24709 0.95003 0.98182 0.93378 1.69941 1.12076 1.34401 1.35337 0.86733 0.81203 0.85271 0.78651 1.19170 1.19906 1.15872 1.78071 1.21237 1.00797 1.12114 1.48058 1.50805 1.10114 1.10634 0.71215 0.92196 0.91494 0.90775 0.87841 0.89291 0.92492 0.90955 0.91748 0.82679 0.92036 0.91340 0.92098 0.90636 0.90408 0.77361 0.88703 0.88677 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.89 37.15 0.37 -0.52 16 2 C -0.05 -0.25 6.56 -27.88 -0.18 -0.43 16 3 C 0.29 2.55 7.49 -155.69 -1.17 1.39 16 4 N -0.53 -5.96 11.19 -8.16 -0.09 -6.05 16 5 C 0.21 2.33 6.62 -156.85 -1.04 1.29 16 6 C 0.18 1.70 3.22 -68.86 -0.22 1.48 16 7 H 0.08 0.76 7.15 -51.93 -0.37 0.39 16 8 C -0.13 -1.10 9.50 37.16 0.35 -0.75 16 9 N -0.67 -6.68 6.21 -100.95 -0.63 -7.31 16 10 C 0.07 0.64 2.75 -67.71 -0.19 0.45 16 11 H 0.06 0.48 7.34 -51.93 -0.38 0.10 16 12 C -0.14 -1.03 9.34 37.16 0.35 -0.69 16 13 C 0.12 1.37 5.31 -4.04 -0.02 1.35 16 14 N -0.74 -10.08 4.98 -60.30 -0.30 -10.38 16 15 C 0.53 9.81 7.85 -10.99 -0.09 9.72 16 16 O -0.52 -11.36 15.86 5.56 0.09 -11.27 16 17 C -0.12 -2.48 6.16 36.00 0.22 -2.26 16 18 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 19 C -0.52 -15.15 10.04 30.94 0.31 -14.84 16 20 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 21 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 22 N -0.88 -26.63 13.97 55.49 0.78 -25.85 16 23 Si 0.86 21.92 27.74 -169.99 -4.71 17.20 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.23 -6.01 6.74 56.52 0.38 -5.63 16 27 N -0.29 -3.41 12.48 32.42 0.40 -3.01 16 28 N -0.48 -4.26 7.45 32.62 0.24 -4.01 16 29 H 0.44 2.61 8.96 -182.34 -1.63 0.97 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.52 6.79 -51.93 -0.35 0.17 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.35 4.04 5.86 -39.29 -0.23 3.81 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.40 6.89 -51.93 -0.36 0.04 16 42 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.39 4.69 7.39 -40.82 -0.30 4.39 16 45 H 0.09 1.78 8.14 -51.92 -0.42 1.35 16 46 H 0.09 1.80 8.14 -51.91 -0.42 1.38 16 47 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 402.18 15.07 6.06 6.06 Total: -1.00 -36.00 402.18 -10.26 -46.26 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -8.70 Total: 5.00 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -1.40 Total: -1.09 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.40 Total: -56.60 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.20 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.00 -10.26 -46.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690555309.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.384 kcal (2) G-P(sol) polarization free energy of solvation -35.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds